arXiv research

Nonparametric undirected graphical model selection using diffusion models

The representation of the approximate posterior is a critical aspect of effective variational autoencoders (VAEs). Poor choices for the approximate posterior have a detrimental impact on the generative performance of VAEs due to the mismatch with the true posterior. We extend the class of posterior models that may be l…

Undirected graphical models are applied in genomics, protein structure prediction, and neuroscience to identify sparse interactions that underlie discrete data. Although Bayesian methods for inference would be favorable in these contexts, they are rarely used because they require doubly intractable Monte Carlo sampling…

Undirected neural sequence models such as BERT (Devlin et al., 2019) have received renewed interest due to their success on discriminative natural language understanding tasks such as question-answering and natural language inference. The problem of generating sequences directly from these models has received relativel…

Many problems in machine learning are naturally expressed in the language of undirected graphical models. Here, we propose black-box learning and inference algorithms for undirected models that optimize a variational approximation to the log-likelihood of the model. Central to our approach is an upper bound on the log-…

A new inference network learns undirected models from data.

Bayesian learning in undirected graphical models|computing posterior distributions over parameters and predictive quantities is exceptionally difficult. We conjecture that for general undirected models, there are no tractable MCMC (Markov Chain Monte Carlo) schemes giving the correct equilibrium distribution over param…

Iterative Proportional Fitting (IPF), combined with EM, is commonly used as an algorithm for likelihood maximization in undirected graphical models. In this paper, we present two iterative algorithms that generalize upon IPF. The first one is for likelihood maximization in discrete chain factor graphs, which we define …

Study financial market graphs with Laplacian constraints.

For many large undirected models that arise in real-world applications, exact maximumlikelihood training is intractable, because it requires computing marginal distributions of the model. Conditional training is even more difficult, because the partition function depends not only on the parameters, but also on the obse…

An undirected graphical model is a joint probability distribution defined on an undirected graph G*, where the vertices in the graph index a collection of random variables and the edges encode conditional independence relationships among random variables. The undirected graphical model selection (UGMS) problem is to es…

Replicated Softmax model, a well-known undirected topic model, is powerful in extracting semantic representations of documents. Traditional learning strategies such as Contrastive Divergence are very inefficient. This paper provides a novel estimator to speed up the learning based on Noise Contrastive Estimate, extende…

A goal in network science is the geometrical characterization of complex networks. In this direction, we have recently introduced Forman's discretization of Ricci curvature to the realm of undirected networks. Investigation of this edge-centric network measure, Forman-Ricci curvature, in diverse model and real-world un…

While learning the maximum likelihood value of parameters of an undirected graphical model is hard, modelling the posterior distribution over parameters given data is harder. Yet, undirected models are ubiquitous in computer vision and text modelling (e.g. conditional random fields). But where Bayesian approaches for d…

New method clusters directed and undirected graphs without losing directional information.

Recent methods for estimating sparse undirected graphs for real-valued data in high dimensional problems rely heavily on the assumption of normality. We show how to use a semiparametric Gaussian copula--or "nonparanormal"--for high dimensional inference. Just as additive models extend linear models by replacing linear …

Estimates log-concave densities in graphical models using tent functions.

Chordal graphs can be used to encode dependency models that are representable by both directed acyclic and undirected graphs. This paper discusses a very simple and efficient algorithm to learn the chordal structure of a probabilistic model from data. The algorithm is a greedy hill-climbing search algorithm that uses t…

New algorithm reduces regret in multi-agent bandits over undirected graphs.

Undirected graphs are often used to describe high dimensional distributions. Under sparsity conditions, the graph can be estimated using $\ell_1$ penalization methods. However, current methods assume that the data are independent and identically distributed. If the distribution, and hence the graph, evolves over time t…

We show that, for generative classifiers, conditional independence corresponds to linear constraints for the induced discrimination functions. Discrimination functions of undirected Markov network classifiers can thus be characterized by sets of linear constraints. These constraints are represented by a second order fi…

Graph convolutional networks adapt the architecture of convolutional neural networks to learn rich representations of data supported on arbitrary graphs by replacing the convolution operations of convolutional neural networks with graph-dependent linear operations. However, these graph-dependent linear operations are d…

We investigate the problem of learning discrete, undirected graphical models in a differentially private way. We show that the approach of releasing noisy sufficient statistics using the Laplace mechanism achieves a good trade-off between privacy, utility, and practicality. A naive learning algorithm that uses the nois…

We introduce a new family of graphical models that consists of graphs with possibly directed, undirected and bidirected edges but without directed cycles. We show that these models are suitable for representing causal models with additive error terms. We provide a set of sufficient graphical criteria for the identifica…

Undirected graphs are often used to describe high dimensional distributions. Under sparsity conditions, the graph can be estimated using $\ell_1$-penalization methods. We propose and study the following method. We combine a multiple regression approach with ideas of thresholding and refitting: first we infer a sparse u…

QT improves inference in complex PGMs with hidden variables.

Graphical models have proven to be powerful tools for representing high-dimensional systems of random variables. One example of such a model is the undirected graph, in which lack of an edge represents conditional independence between two random variables given the rest. Another example is the bidirected graph, in whic…

This paper presents foundational theoretical results on distributed parameter estimation for undirected probabilistic graphical models. It introduces a general condition on composite likelihood decompositions of these models which guarantees the global consistency of distributed estimators, provided the local estimator…

Generalizes k-means to graphs using PageRank.

Graph algorithms are key tools in many fields of science and technology. Some of these algorithms depend on propagating information between distant nodes in a graph. Recently, there have been a number of deep learning architectures proposed to learn on undirected graphs. However, most of these architectures aggregate i…

For undirected graphs, the Ricci curvature introduced by Lin-Lu-Yau has been widely studied from various perspectives, especially geometric analysis. In the present paper, we discuss generalization problem of their Ricci curvature for directed graphs. We introduce a new generalization by using the mean transition proba…

We consider the problem of learning Bayesian network classifiers that maximize the marginover a set of classification variables. We find that this problem is harder for Bayesian networks than for undirected graphical models like maximum margin Markov networks. The main difficulty is that the parameters in a Bayesian ne…

A wide class of machine learning algorithms can be reduced to variable elimination on factor graphs. While factor graphs provide a unifying notation for these algorithms, they do not provide a compact way to express repeated structure when compared to plate diagrams for directed graphical models. To exploit efficient t…

We extend the edge version of the classical Menger's Theorem for undirected graphs to $n$-dimensional simplicial complexes with chains over the field $\mathbb{F}_2$. The classical Menger's Theorem states that two different vertices in an undirected graph can be connected by $k$ pairwise edge-disjoint paths if, and only…

NetOTC compares and aligns directed or undirected networks via random walk transitions.

AGMs outperform EGMs in generalizing to unseen inference tasks.

We consider the problem of learning the weighted edges of a balanced mixture of two undirected graphs from epidemic cascades. While mixture models are popular modeling tools, algorithmic development with rigorous guarantees has lagged. Graph mixtures are apparently no exception: until now, very little is known about wh…

Approximates cycles in planar and bounded-genus graphs.

Graph Gaussian processes use Matérn models for better function learning.

Optimal sample complexity for learning Gaussian DAG models established.

In many supervised learning tasks, the entities to be labeled are related to each other in complex ways and their labels are not independent. For example, in hypertext classification, the labels of linked pages are highly correlated. A standard approach is to classify each entity independently, ignoring the correlation…

R package huge simplifies graph estimation for high-dimensional data.

We prove that the homeomorphism problem for 2-manifolds can be decided in logspace. The proof relies on Reingold's logspace solution to the undirected $s,t$-connectivity problem in graphs.

Develops a new variational estimator for node popularity in bipartite networks.

This paper presents the R package gRapHD for efficient selection of high-dimensional undirected graphical models. The package provides tools for selecting trees, forests and decomposable models minimizing information criteria such as AIC or BIC, and for displaying the independence graphs of the models. It has also some…

In this paper, we define the curvature dimension inequalities CD(m, K) on finite directed graphs modifying the case of undirected graphs. As a main result, we evaluate m and K on finite directed graphs.

Study semi-coarse spaces' homotopy and homology, extending coarse geometry.

We consider intrinsic linking and knotting in the context of directed graphs. We construct an example of a directed graph that contains a consistently oriented knotted cycle in every embedding. We also construct examples of intrinsically 3-linked and 4-linked directed graphs. We introduce two operations, consistent edg…