arXiv research

Nonparametric undirected graphical model selection using diffusion models

The representation of the approximate posterior is a critical aspect of effective variational autoencoders (VAEs). Poor choices for the approximate posterior have a detrimental impact on the generative performance of VAEs due to the mismatch with the true posterior. We extend the class of posterior models that may be l…

Undirected graphical models are applied in genomics, protein structure prediction, and neuroscience to identify sparse interactions that underlie discrete data. Although Bayesian methods for inference would be favorable in these contexts, they are rarely used because they require doubly intractable Monte Carlo sampling…

Many problems in machine learning are naturally expressed in the language of undirected graphical models. Here, we propose black-box learning and inference algorithms for undirected models that optimize a variational approximation to the log-likelihood of the model. Central to our approach is an upper bound on the log-…

Undirected neural sequence models such as BERT (Devlin et al., 2019) have received renewed interest due to their success on discriminative natural language understanding tasks such as question-answering and natural language inference. The problem of generating sequences directly from these models has received relativel…

Bayesian learning in undirected graphical models|computing posterior distributions over parameters and predictive quantities is exceptionally difficult. We conjecture that for general undirected models, there are no tractable MCMC (Markov Chain Monte Carlo) schemes giving the correct equilibrium distribution over param…

New method clusters directed and undirected graphs without losing directional information.

A goal in network science is the geometrical characterization of complex networks. In this direction, we have recently introduced Forman's discretization of Ricci curvature to the realm of undirected networks. Investigation of this edge-centric network measure, Forman-Ricci curvature, in diverse model and real-world un…

Study financial market graphs with Laplacian constraints.

Iterative Proportional Fitting (IPF), combined with EM, is commonly used as an algorithm for likelihood maximization in undirected graphical models. In this paper, we present two iterative algorithms that generalize upon IPF. The first one is for likelihood maximization in discrete chain factor graphs, which we define …

An undirected graphical model is a joint probability distribution defined on an undirected graph G*, where the vertices in the graph index a collection of random variables and the edges encode conditional independence relationships among random variables. The undirected graphical model selection (UGMS) problem is to es…

For many large undirected models that arise in real-world applications, exact maximumlikelihood training is intractable, because it requires computing marginal distributions of the model. Conditional training is even more difficult, because the partition function depends not only on the parameters, but also on the obse…

New algorithm reduces regret in multi-agent bandits over undirected graphs.

Replicated Softmax model, a well-known undirected topic model, is powerful in extracting semantic representations of documents. Traditional learning strategies such as Contrastive Divergence are very inefficient. This paper provides a novel estimator to speed up the learning based on Noise Contrastive Estimate, extende…

Undirected graphs are often used to describe high dimensional distributions. Under sparsity conditions, the graph can be estimated using $\ell_1$ penalization methods. However, current methods assume that the data are independent and identically distributed. If the distribution, and hence the graph, evolves over time t…

We show that, for generative classifiers, conditional independence corresponds to linear constraints for the induced discrimination functions. Discrimination functions of undirected Markov network classifiers can thus be characterized by sets of linear constraints. These constraints are represented by a second order fi…

Typical amortized inference in variational autoencoders is specialized for a single probabilistic query. Here we propose an inference network architecture that generalizes to unseen probabilistic queries. Instead of an encoder-decoder pair, we can train a single inference network directly from data, using a cost functi…

Generalizes k-means to graphs using PageRank.

Graph algorithms are key tools in many fields of science and technology. Some of these algorithms depend on propagating information between distant nodes in a graph. Recently, there have been a number of deep learning architectures proposed to learn on undirected graphs. However, most of these architectures aggregate i…

For undirected graphs, the Ricci curvature introduced by Lin-Lu-Yau has been widely studied from various perspectives, especially geometric analysis. In the present paper, we discuss generalization problem of their Ricci curvature for directed graphs. We introduce a new generalization by using the mean transition proba…

Recent methods for estimating sparse undirected graphs for real-valued data in high dimensional problems rely heavily on the assumption of normality. We show how to use a semiparametric Gaussian copula--or "nonparanormal"--for high dimensional inference. Just as additive models extend linear models by replacing linear …

We extend the edge version of the classical Menger's Theorem for undirected graphs to $n$-dimensional simplicial complexes with chains over the field $\mathbb{F}_2$. The classical Menger's Theorem states that two different vertices in an undirected graph can be connected by $k$ pairwise edge-disjoint paths if, and only…

NetOTC compares and aligns directed or undirected networks via random walk transitions.

While learning the maximum likelihood value of parameters of an undirected graphical model is hard, modelling the posterior distribution over parameters given data is harder. Yet, undirected models are ubiquitous in computer vision and text modelling (e.g. conditional random fields). But where Bayesian approaches for d…

Approximates cycles in planar and bounded-genus graphs.

Chordal graphs can be used to encode dependency models that are representable by both directed acyclic and undirected graphs. This paper discusses a very simple and efficient algorithm to learn the chordal structure of a probabilistic model from data. The algorithm is a greedy hill-climbing search algorithm that uses t…

Estimates log-concave densities in graphical models using tent functions.

Graph convolutional networks adapt the architecture of convolutional neural networks to learn rich representations of data supported on arbitrary graphs by replacing the convolution operations of convolutional neural networks with graph-dependent linear operations. However, these graph-dependent linear operations are d…

We prove that the homeomorphism problem for 2-manifolds can be decided in logspace. The proof relies on Reingold's logspace solution to the undirected $s,t$-connectivity problem in graphs.

Undirected graphs are often used to describe high dimensional distributions. Under sparsity conditions, the graph can be estimated using $\ell_1$-penalization methods. We propose and study the following method. We combine a multiple regression approach with ideas of thresholding and refitting: first we infer a sparse u…

In this paper, we define the curvature dimension inequalities CD(m, K) on finite directed graphs modifying the case of undirected graphs. As a main result, we evaluate m and K on finite directed graphs.

Study semi-coarse spaces' homotopy and homology, extending coarse geometry.

We consider intrinsic linking and knotting in the context of directed graphs. We construct an example of a directed graph that contains a consistently oriented knotted cycle in every embedding. We also construct examples of intrinsically 3-linked and 4-linked directed graphs. We introduce two operations, consistent edg…

FastMap-D embeds directed graphs using potential fields.

We investigate the problem of learning discrete, undirected graphical models in a differentially private way. We show that the approach of releasing noisy sufficient statistics using the Laplace mechanism achieves a good trade-off between privacy, utility, and practicality. A naive learning algorithm that uses the nois…

In earlier work we introduced the graph bracket polynomial of graphs with marked vertices, motivated by the fact that the Kauffman bracket of a link diagram D is determined by a looped, marked version of the interlacement graph associated to a directed Euler system of the universe graph of D. Here we extend the graph b…

QT improves inference in complex PGMs with hidden variables.

Graphical models have proven to be powerful tools for representing high-dimensional systems of random variables. One example of such a model is the undirected graph, in which lack of an edge represents conditional independence between two random variables given the rest. Another example is the bidirected graph, in whic…

We introduce a new family of graphical models that consists of graphs with possibly directed, undirected and bidirected edges but without directed cycles. We show that these models are suitable for representing causal models with additive error terms. We provide a set of sufficient graphical criteria for the identifica…

This paper presents foundational theoretical results on distributed parameter estimation for undirected probabilistic graphical models. It introduces a general condition on composite likelihood decompositions of these models which guarantees the global consistency of distributed estimators, provided the local estimator…

We consider the problem of learning Bayesian network classifiers that maximize the marginover a set of classification variables. We find that this problem is harder for Bayesian networks than for undirected graphical models like maximum margin Markov networks. The main difficulty is that the parameters in a Bayesian ne…

We consider the problem of providing nonparametric confidence guarantees for undirected graphs under weak assumptions. In particular, we do not assume sparsity, incoherence or Normality. We allow the dimension $D$ to increase with the sample size $n$. First, we prove lower bounds that show that if we want accurate infe…

We consider the problem of learning the weighted edges of a balanced mixture of two undirected graphs from epidemic cascades. While mixture models are popular modeling tools, algorithmic development with rigorous guarantees has lagged. Graph mixtures are apparently no exception: until now, very little is known about wh…

A wide class of machine learning algorithms can be reduced to variable elimination on factor graphs. While factor graphs provide a unifying notation for these algorithms, they do not provide a compact way to express repeated structure when compared to plate diagrams for directed graphical models. To exploit efficient t…

A Lie bracket defined on the linear span of the free homotopy classes of undirected closed curves was discovered in stages passing through Thurston's earthquake deformations, Wolpert's corresponding calculations with Hamiltonian vector fields and Goldman's algebraic treatment of the latter leading to a Lie bracket on t…

We construct an infinitely exchangeable process on the set $\cate$ of subsets of the power set of the natural numbers $\mathbb{N}$ via a Poisson point process with mean measure $Λ$ on the power set of $\mathbb{N}$. Each $E\in\cate$ has a least monotone cover in $\catf$, the collection of monotone subsets of $\cate$, an…

Characterizes Bayesian networks up to unconditional equivalence.

The sizes of Markov equivalence classes of directed acyclic graphs play important roles in measuring the uncertainty and complexity in causal learning. A Markov equivalence class can be represented by an essential graph and its undirected subgraphs determine the size of the class. In this paper, we develop a method to …