Survival analysis models research reproducibility, offering new insights.
problem Reproducibility crisis in machine learning research.
method Survival analysis to model reproducibility as a continuous process.
result Survival analysis provides deeper insights into research reproducibility.
Clarifies the scope of 'reproducibility' in AI and ML.
problem Unclear meaning of 'reproducibility' in AI and ML.
method Analyzes the community's works on reproducibility.
result Identifies eight general topic areas of reproducibility.
This chapter introduces reproducibility in machine learning for medical imaging.
problem Lack of reproducibility in machine learning for medical imaging.
method Distinguishes and defines types of reproducibility, outlines requirements, and discusses utility.
result Discussion on benefits and a plea for a non-dogmatic approach to reproducibility.
NeurIPS 2019 program improves reproducibility in machine learning.
problem Ensuring machine learning research results are reproducible and reliable.
method Code submission policy, reproducibility challenge, and checklist integration.
result Improved reproducibility standards across the machine learning community.
Teaches reproducible research to medical students and postgrads.
problem Lack of reproducibility in medical research practices.
method Designed and delivered a lecture series on reproducible research.
result Encountered practical obstacles in reproducing a published analysis.
In this paper, we discuss the approaches we took and trade-offs involved in making a paper on a conceptual topic in pattern recognition research fully reproducible. We discuss our definition of reproducibility, the tools used, how the analysis was set up, show some examples of alternative analyses the code enables and …
learn2learn simplifies meta-learning research by providing a library and standardized interfaces.
problem Prototyping and reproducibility issues in meta-learning.
method Developed a library (learn2learn) with common routines and standardized interfaces.
result Fosters a community around standardized software for meta-learning research.
A modular framework for knowledge distillation simplifies experiments and reproducibility.
problem Difficulty in reproducing knowledge distillation studies due to lack of generalized frameworks.
method A configuration-driven PyTorch framework for knowledge distillation studies.
result Demonstrates efficient training strategies and various knowledge distillation methods.
FairGround offers a diverse dataset corpus for fair ML research.
problem Lack of diverse, well-annotated datasets in fair ML research.
method Unified framework and Python package for reproducible fair ML research.
result Advances reproducibility and generalizability of fair ML research.
Machine learning algorithms designed to characterize, monitor, and intervene on human health (ML4H) are expected to perform safely and reliably when operating at scale, potentially outside strict human supervision. This requirement warrants a stricter attention to issues of reproducibility than other fields of machine …
CK simplifies ML model deployment and reproducibility with open APIs and DevOps.
problem Making ML models reproducible and deployable across different environments.
method Decompose complex systems into reusable sub-components with unified APIs and DevOps principles.
result Automatically co-design and optimize ML models for speed, accuracy, energy, and size.
Torch-Points3D simplifies 3D deep learning research and reproducibility.
problem Lack of transparency and reproducibility in 3D deep learning research.
method Modular framework with quality-of-life features, standardized protocols, and open-source implementation.
result Facilitates fair and rigorous evaluation of 3D deep learning methods.
CodeReef enables sharing ML models across platforms efficiently.
problem Sharing and deploying ML models across different systems efficiently.
method Developed an open platform to share ML components, automate deployment, and benchmark models.
result Demonstrated efficient deployment and benchmarking of ML models across diverse platforms.
Benchopt automates machine learning benchmarking across languages and hardware.
problem Limited transparency and tedious re-implementation work in machine learning validation.
method A collaborative framework for automating, reproducing, and publishing optimization benchmarks.
result Demonstrates practical findings that highlight the importance of details in machine learning validation.
LLM-based trading systems vary in execution realism and reproducibility.
problem LLM-based trading systems vary in execution realism and reproducibility.
method Reproducibility audit of 30 trade-relevant primary studies.
result LLM-based trading systems vary in execution realism and reproducibility.
Open dataset and pipeline for realistic OPE research.
problem Lack of realistic and reproducible OPE experimental studies.
method Public logged bandit dataset and Python software.
result Enables experimental comparisons of OPE estimators.
In this paper, we reproduce the experiments of Artetxe et al. (2018b) regarding the robust self-learning method for fully unsupervised cross-lingual mappings of word embeddings. We show that the reproduction of their method is indeed feasible with some minor assumptions. We further investigate the robustness of their m…
The field of deep learning is experiencing a trend towards producing reproducible research. Nevertheless, it is still often a frustrating experience to reproduce scientific results. This is especially true in the machine learning community, where it is considered acceptable to have black boxes in your experiments. We p…
NetML provides datasets and challenges for network traffic analysis.
problem Lack of representative datasets and reproducibility issues in network traffic analysis.
method Released three open datasets with flow features and raw packets, implemented machine learning methods.
result NetML datasets will serve as a common platform for AI-driven research.
Fine-tuned open-source LLMs match or exceed closed-source models in social science research.
problem Limited scalability and high costs of large LLMs in social science research.
method Fine-tuning open-source models for specific tasks, exploring training set size effects, proposing hybrid workflow.
result Small, fine-tuned open-source LLMs achieve equal or superior performance to commercial alternatives.
SLM Lab is a framework for reproducible RL research with modular algorithms.
problem Reproducibility in deep reinforcement learning.
method Modular software framework for RL algorithms, synchronous/asynchronous execution, hyperparameter search, result analysis.
result Comprehensive benchmark and novel RL algorithms (e.g., discrete-AC variant, hybrid training method).
What makes a paper independently reproducible? Debates on reproducibility center around intuition or assumptions but lack empirical results. Our field focuses on releasing code, which is important, but is not sufficient for determining reproducibility. We take the first step toward a quantifiable answer by manually att…
African languages are numerous, complex and low-resourced. The datasets required for machine translation are difficult to discover, and existing research is hard to reproduce. Minimal attention has been given to machine translation for African languages so there is scant research regarding the problems that arise when …
As reinforcement learning (RL) achieves more success in solving complex tasks, more care is needed to ensure that RL research is reproducible and that algorithms herein can be compared easily and fairly with minimal bias. RL results are, however, notoriously hard to reproduce due to the algorithms' intrinsic variance, …
In this paper, we introduce ChainerRL, an open-source deep reinforcement learning (DRL) library built using Python and the Chainer deep learning framework. ChainerRL implements a comprehensive set of DRL algorithms and techniques drawn from state-of-the-art research in the field. To foster reproducible research, and fo…
The reproducibility of scientific research has become a point of critical concern. We argue that openness and transparency are critical for reproducibility, and we outline an ecosystem for open and transparent science that has emerged within the human neuroimaging community. We discuss the range of open data sharing re…
Study compares 29 emulators across 60 test functions and 40 datasets.
problem Comparing the strengths and weaknesses of different emulators.
method Large-scale, fully reproducible comparison using R package duqling.
result Detailed empirical insights into emulator strengths and weaknesses.
Recent advances in neural architecture search (NAS) demand tremendous computational resources, which makes it difficult to reproduce experiments and imposes a barrier-to-entry to researchers without access to large-scale computation. We aim to ameliorate these problems by introducing NAS-Bench-101, the first public arc…
This paper identifies and addresses biases in medical imaging research.
problem Challenges in medical imaging research, including biases in datasets, methods, and evaluation metrics.
method Literature review and analysis of potential biases.
result Recommendations to counteract biases in future research.
Big data repositories from online learning platforms such as Massive Open Online Courses (MOOCs) represent an unprecedented opportunity to advance research on education at scale and impact a global population of learners. To date, such research has been hindered by poor reproducibility and a lack of replication, largel…
Study improves LLMs for PPI analysis by addressing uncertainty.
problem Uncertainty in LLM predictions for PPIs.
method Fine-tuned LLaMA-3 and BioMedGPT models, LoRA ensembles, Bayesian LoRA for UQ.
result Competitive PPI identification performance across diverse disease contexts.
Despite the recent progress in deep reinforcement learning field (RL), and, arguably because of it, a large body of work remains to be done in reproducing and carefully comparing different RL algorithms. We present catalyst.RL, an open source framework for RL research with a focus on reproducibility and flexibility. Ma…
This study connects Gaussian processes and RKHS, bridging two machine learning communities.
problem Understanding the relationship between Gaussian processes and RKHS.
method Examining connections and equivalences in regression, interpolation, and other topics.
result Established the equivalence between Gaussian Hilbert space and RKHS.
Targeted Learning uses robust statistics for reproducible research.
problem Improving reproducibility and rigor in statistical analyses.
method Principled standard for statistical estimation and inference, minimizing assumptions.
result Enhances reliability of statistical conclusions.
CogDL simplifies graph deep learning experiments and benchmarks.
problem Challenges in training and evaluating graph neural networks.
method Unified design for training and evaluation, mixed precision training, efficient sparse operators, ease of use.
result CogDL is the most competitive graph library for efficiency and ease of use.
AlphaForgeBench evaluates LLMs as quantitative researchers, not trading agents, to address instability in financial decision-making.
problem Behavioral instability of LLMs in sequential decision-making under financial uncertainty.
method Proposes AlphaForgeBench, a framework that requires LLMs to generate executable alpha factors and compose factor-based trading strategies.
result Eliminates execution-induced instability and provides a rigorous benchmark for evaluating financial reasoning.
Algorithm generates realistic metaorders from public trade data.
problem Generating realistic metaorders from public data.
method Novel algorithm that recovers stylized facts of metaorders impact.
result Average realized short-term price impact has a mechanical origin.
Generating molecules with desired chemical properties is important for drug discovery. The use of generative neural networks is promising for this task. However, from visual inspection, it often appears that generated samples lack diversity. In this paper, we quantify this internal chemical diversity, and we raise the …
This paper presents a large Bitcoin transaction graph dataset for research.
problem Lack of a comprehensive dataset for Bitcoin research.
method Created a large-scale transactions graph dataset with timestamps.
result Established a large publicly available dataset for advanced research.
Co-designing efficient machine learning based systems across the whole hardware/software stack to trade off speed, accuracy, energy and costs is becoming extremely complex and time consuming. Researchers often struggle to evaluate and compare different published works across rapidly evolving software frameworks, hetero…
We tackle the problem of protein secondary structure prediction using a common task framework. This lead to the introduction of multiple ideas for neural architectures based on state of the art building blocks, used in this task for the first time. We take a principled machine learning approach, which provides genuine,…
This study assesses the reproducibility of 1H-MRS scans across different vendors and sessions.
problem Lack of harmonization in magnetic resonance spectroscopy protocols among vendors.
method Analysis of CV and ICC for within- and between-sessions, and correlation coefficients for across machines.
result Metabolite concentrations are highly reproducible across different vendors and sessions.
FedML aims to improve FL research by providing a library and benchmark.
problem Inconsistent FL algorithm development and performance comparison.
method FedML offers an open research library and benchmark supporting diverse computing paradigms and flexible API design.
result FedML facilitates fair algorithm comparison and development in federated learning.
PettingZoo library accelerates multi-agent reinforcement learning research.
problem Challenges in multi-agent reinforcement learning, especially conceptual models of games.
method Developed PettingZoo library with AEC games model to address multi-agent reinforcement learning challenges.
result AEC games model addresses conceptual issues in multi-agent reinforcement learning environments.
New framework promotes reproducible, domain-agnostic reinforcement learning algorithms.
problem Domain-specific, compute-resource-maximizing, and non-reproducible participant solutions in reinforcement learning competitions.
method Submission retraining, domain randomization, desemantization through domain obfuscation, and compute/environment-sample budget limitation.
result Participant submissions are reproducible, non-specific to the competition environment, and sample/resource efficient.
KEEN Universe provides reproducible and transferable knowledge graph embeddings.
problem Lack of reproducibility and transferability in KGE experiments.
method Developed an ecosystem with Python packages for reproducible and transferable KGEs.
result KEEN Universe facilitates sharing of trained KGE models across different fields.
New benchmarks provide full training data for NAS research.
problem Limited training data on popular benchmarks restricts multi-fidelity techniques.
method SVD and noise modeling to create surrogate benchmarks with full training info.
result Learning curve extrapolation framework improves single-fidelity algorithms.
The paper advocates for interpretable, accountable, reproducible machine learning in medicine.
problem Black box models in medicine lack transparency and regulatory approval.
method Intrinsically interpretable modeling approaches and collaborative learning paradigms.
result Interpretable machine learning models can support clinical decisions and gain regulatory approval.