Paper uses genome Markov structure for outlier detection and read classification.
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META improves taxonomic classification and abundance estimation in metagenomics with deep learning and memory efficiency.
Semi-supervised deep learning detects problematic reads for genome assembly.
Recurrent Neural Networks (RNN) are a type of statistical model designed to handle sequential data. The model reads a sequence one symbol at a time. Each symbol is processed based on information collected from the previous symbols. With existing RNN architectures, each symbol is processed using only information from th…
Recurrent neural networks (RNNs) can model natural language by sequentially 'reading' input tokens and outputting a distributed representation of each token. Due to the sequential nature of RNNs, inference time is linearly dependent on the input length, and all inputs are read regardless of their importance. Efforts to…
We address the problem of graph classification based only on structural information. Inspired by natural language processing techniques (NLP), our model sequentially embeds information to estimate class membership probabilities. Besides, we experiment with NLP-like variational regularization techniques, making the mode…
With an aging and growing population, the number of women requiring either screening or symptomatic mammograms is increasing. To reduce the number of mammograms that need to be read by a radiologist while keeping the diagnostic accuracy the same or better than current clinical practice, we develop Man and Machine Mammo…
Dataset for measuring reading levels in India's children.
A real-world dataset is provided from a pulp-and-paper manufacturing industry. The dataset comes from a multivariate time series process. The data contains a rare event of paper break that commonly occurs in the industry. The data contains sensor readings at regular time-intervals (x's) and the event label (y). The pri…
Aggregates diverse zero-shot LLM outputs for better corporate disclosure classification.
Dead-Direction Signatures (DDS) provide a cheap, closed-form spectral reading of a network's singular complexity.
Book teaches how Lagrangian torus fibration base geometry can be read off.
Paper explores zero-shot cross-lingual reading comprehension using pre-trained multi-lingual model.
Metagenomics characterizes the taxonomic diversity of microbial communities by sequencing DNA directly from an environmental sample. One of the main challenges in metagenomics data analysis is the binning step, where each sequenced read is assigned to a taxonomic clade. Due to the large volume of metagenomics datasets,…
QAInfomax improves reading comprehension by maximizing mutual information, achieving state-of-the-art performance.
The key contribution of this paper is to propose a classification into two dimensions of the load forecasting studies to decide which forecasting tools to use in which case. This classification aims to provide a synthetic view of the relevant forecasting techniques and methodologies by forecasting problem. In addition,…
Many Machine Reading and Natural Language Understanding tasks require reading supporting text in order to answer questions. For example, in Question Answering, the supporting text can be newswire or Wikipedia articles; in Natural Language Inference, premises can be seen as the supporting text and hypotheses as question…
Shannon's mathematical theory of communication defines fundamental limits on how much information can be transmitted between the different components of any man-made or biological system. This paper is an informal but rigorous introduction to the main ideas implicit in Shannon's theory. An annotated reading list is pro…
We present a graphical criterion for reading dependencies from the minimal directed independence map G of a graphoid p when G is a polytree and p satisfies composition and weak transitivity. We prove that the criterion is sound and complete. We argue that assuming composition and weak transitivity is not too restrictiv…
New approach speeds up DNA sequence alignment.
We present PubMed 200k RCT, a new dataset based on PubMed for sequential sentence classification. The dataset consists of approximately 200,000 abstracts of randomized controlled trials, totaling 2.3 million sentences. Each sentence of each abstract is labeled with their role in the abstract using one of the following …
High predictive performance and ease of use and interpretability are important requirements for the applicability of a computer-aided diagnosis (CAD) to human reading studies. We propose a CAD system specifically designed to be more comprehensible to the radiologist reviewing screening breast MRI studies. Multiparametr…
Most work in machine reading focuses on question answering problems where the answer is directly expressed in the text to read. However, many real-world question answering problems require the reading of text not because it contains the literal answer, but because it contains a recipe to derive an answer together with …
Continuous speech recognition from brain activity without vocalization.
This paper is an introduction to rational tangles, rational knots and links and their applications to DNA. The paper can be read as an introduction to our more technical papers on rational tangles (math.GT/0311499) and on rational knots (math.GT/0212011). The present paper includes a self-contained account of the tangl…
Bi-directional LSTMs are a powerful tool for text representation. On the other hand, they have been shown to suffer various limitations due to their sequential nature. We investigate an alternative LSTM structure for encoding text, which consists of a parallel state for each word. Recurrent steps are used to perform lo…
Neural network optimizes learning sequence for reading words.
SparseSense improves HAR from sparse sensor data, outperforming state-of-the-art models.
Many recent papers address reading comprehension, where examples consist of (question, passage, answer) tuples. Presumably, a model must combine information from both questions and passages to predict corresponding answers. However, despite intense interest in the topic, with hundreds of published papers vying for lead…
This study uses computational methods to analyze Italo Calvino's 'Invisible Cities', improving on previous literary analysis.
Survey analyzes economic research on cryptocurrencies using hybrid methods.
We show how the rotation and translation fields of a surface, introduced by G. Darboux, may be used to obtain short proofs of a well-known theorem (that reads that the total mean curvature of a surface is stationary under an infinitesimal bending) and a new theorem (that reads that every infinitesimal flex of any simpl…
This work tackles missing annotations in large sensor datasets.
With the arrival of the big data era, more and more data are becoming readily available in various real-world applications and those data are usually highly heterogeneous. Taking computational medicine as an example, we have both Electronic Health Records (EHR) and medical images for each patient. For complicated disea…
Typical large-scale recommender systems use deep learning models that are stored on a large amount of DRAM. These models often rely on embeddings, which consume most of the required memory. We present Bandana, a storage system that reduces the DRAM footprint of embeddings, by using Non-volatile Memory (NVM) as the prim…
Single Molecule Real-Time (SMRT) sequencing is a recent advancement of Next Gen technology developed by Pacific Bio (PacBio). It comes with an explosion of long and noisy reads demanding cutting edge research to get most out of it. To deal with the high error probability of SMRT data, a novel contextual Locality Sensit…
Study prenatal PM2.5 exposure and 4th grade reading scores, identifying critical windows of susceptibility.
As automotive electronics continue to advance, cars are becoming more and more reliant on sensors to perform everyday driving operations. These sensors are omnipresent and help the car navigate, reduce accidents, and provide comfortable rides. However, they can also be used to learn about the drivers themselves. In thi…
The covariance graph (aka bi-directed graph) of a probability distribution is the undirected graph where two nodes are adjacent iff their corresponding random variables are marginally dependent in . In this paper, we present a graphical criterion for reading dependencies from , under the assumption that $…
Three-dimensional smooth, compact toric varieties (SCTV), when viewed as real six-dimensional manifolds, can admit G-structures rendering them suitable for internal manifolds in supersymmetric flux compactifications. We develop techniques which allow us to systematically construct G-structures on SCTV and read off thei…
FEM improves attention mechanisms by applying value-driven log-linear tilts.
New classifiers account for context-specific independences.
We present a memory augmented neural network for natural language understanding: Neural Semantic Encoders. NSE is equipped with a novel memory update rule and has a variable sized encoding memory that evolves over time and maintains the understanding of input sequences through read}, compose and write operations. NSE c…
Memory networks are neural networks with an explicit memory component that can be both read and written to by the network. The memory is often addressed in a soft way using a softmax function, making end-to-end training with backpropagation possible. However, this is not computationally scalable for applications which …
Proposes a framework to adjust quotes for informational risk in markets with informed traders and price-revealing quotes.
We consider a novel question answering (QA) task where the machine needs to read from large streaming data (long documents or videos) without knowing when the questions will be given, which is difficult to solve with existing QA methods due to their lack of scalability. To tackle this problem, we propose a novel end-to…
Model learns to discover and disambiguate entities and relations in text streams.
SpeechYOLO detects and locates speech objects in audio signals.