Generative models solve medical imaging inverse problems without needing paired data.
problem Reconstructing medical images from partial measurements.
method Score-based generative models trained on medical images, then sampling to reconstruct images consistent with measurements and physical model.
result Comparable or better performance in CT and MRI tasks, with improved generalization to unknown measurement processes.
TorchIO simplifies medical image processing for deep learning.
problem Challenges in processing medical images like MRI and CT.
method Efficient loading, preprocessing, augmentation, and patch-based sampling.
result Enables researchers to focus on deep learning experiments.
What has happened in machine learning lately, and what does it mean for the future of medical image analysis? Machine learning has witnessed a tremendous amount of attention over the last few years. The current boom started around 2009 when so-called deep artificial neural networks began outperforming other established…
Review of deep learning methods in medical image registration.
problem Improving accuracy and efficiency of medical image registration.
method Classification and detailed analysis of seven categories of DL-based registration methods.
result Comprehensive comparison of DL-based methods for lung and brain registration.
A DenseNet model classifies metastatic cancer in medical images.
problem Classifying metastatic cancer in medical images efficiently and accurately.
method Proposes a DenseNet-based model for metastatic cancer classification on medical images.
result The proposed model outperformed other classical methods like Resnet34, Vgg19.
A GMM-based method generates new 3D structures from medical images.
problem Generating new medical images from limited data and different modalities.
method Gaussian Mixture Model (GMM) for point-cloud generation.
result Generated point-clouds closely match training samples from the same class.
Bayesian Gaussian Processes layer detects out-of-distribution data in medical imaging.
problem Detecting out-of-distribution data in medical imaging tasks.
method Parameter-efficient hierarchical convolutional Gaussian Processes in Wasserstein-2 space.
result Uncertainty estimates enable superior out-of-distribution detection compared to previous methods.
A deep learning approach classifies medical images hierarchically.
problem Limitations of traditional supervised classifiers in medical image classification.
method Hierarchical Medical Image Classification (HMIC) using deep learning models.
result HMIC achieved better performance in classifying medical images hierarchically.
Sparse learning has been shown to be effective in solving many real-world problems. Finding sparse representations is a fundamentally important topic in many fields of science including signal processing, computer vision, genome study and medical imaging. One important issue in applying sparse representation is to find…
A new rotation invariant method for 3D medical imaging classification.
problem Computational expense and lack of rotation invariance in 3D medical image processing.
method Proposes a rotation invariant convolution operator using hypersphere topology.
result Demonstrates improved classification accuracy and rotation invariance.
Image denoising is an important pre-processing step in medical image analysis. Different algorithms have been proposed in past three decades with varying denoising performances. More recently, having outperformed all conventional methods, deep learning based models have shown a great promise. These methods are however …
Cloud based medical image analysis has become popular recently due to the high computation complexities of various deep neural network (DNN) based frameworks and the increasingly large volume of medical images that need to be processed. It has been demonstrated that for medical images the transmission from local to clo…
Develops a new method to create object models from medical images.
problem Variability in anatomical structures and textures limits observer performance.
method Progressive Growing AmbientGAN (ProAmGAN) for creating stochastic object models from medical imaging measurements.
result Demonstrates the effectiveness of ProAmGAN in creating realistic object models.
This chapter introduces reproducibility in machine learning for medical imaging.
problem Lack of reproducibility in machine learning for medical imaging.
method Distinguishes and defines types of reproducibility, outlines requirements, and discusses utility.
result Discussion on benefits and a plea for a non-dogmatic approach to reproducibility.
The paper investigates deep neural networks for medical imaging applications, providing interpretable results.
problem Uninterpretable decisions made by deep neural networks in medical imaging applications.
method Investigation of deep neural networks for malaria, diabetic retinopathy, brain tumor, and tuberculosis detection in various imaging modalities. Visualization of class activation mappings provided.
result Visualization of class activation mappings enhances understanding of deep neural networks and aids doctors in decision-making.
Study reveals differences in medical image models' hidden representation refinement.
problem Understanding how intrinsic dimensionality changes in neural network hidden representations across different domains.
method Analysis of 11 natural and medical image datasets using 6 network architectures.
result Medical image models refine hidden representations earlier, suggesting differences in feature abstraction.
Medical image registration is one of the key processing steps for biomedical image analysis such as cancer diagnosis. Recently, deep learning based supervised and unsupervised image registration methods have been extensively studied due to its excellent performance in spite of ultra-fast computational time compared to …
IAGAN method improves medical image reconstruction by incorporating adaptive GAN priors.
problem Reconstructing high-fidelity medical images from incomplete data.
method Image-adaptive GAN-based reconstruction method (IAGAN).
result IAGAN can recover fine structures relevant for medical diagnosis.
A new metric FRD improves comparing medical images.
problem Comparing medical images for distribution or domain differences.
method Developed a new metric FRD using standardized radiomic features.
result FRD outperforms other metrics in various medical imaging applications.
Deep neural network models used for medical image segmentation are large because they are trained with high-resolution three-dimensional (3D) images. Graphics processing units (GPUs) are widely used to accelerate the trainings. However, the memory on a GPU is not large enough to train the models. A popular approach to …
This work debiases deep chest X-ray classifiers using intra- and post-processing methods.
problem Bias in deep neural networks for chest X-ray classification.
method Intra-processing techniques (fine-tuning and pruning) and post-processing methods.
result Successfully mitigates biases in fully connected and convolutional neural networks, offering stable performance.
Machine learning-based analysis of medical images often faces several hurdles, such as the lack of training data, the curse of dimensionality problem, and the generalization issues. One of the main difficulties is that there exists computational cost problem in dealing with input data of large size matrices which repre…
Deep learning algorithms produces state-of-the-art results for different machine learning and computer vision tasks. To perform well on a given task, these algorithms require large dataset for training. However, deep learning algorithms lack generalization and suffer from over-fitting whenever trained on small dataset,…
Brain imaging analysis on clinically acquired computed tomography (CT) is essential for the diagnosis, risk prediction of progression, and treatment of the structural phenotypes of traumatic brain injury (TBI). However, in real clinical imaging scenarios, entire body CT images (e.g., neck, abdomen, chest, pelvis) are t…
DiffDenoise preserves fine structures in medical images using conditional diffusion models.
problem Medical image denoising often results in loss of fine structures.
method Conditional diffusion model with stabilized reverse sampling and supervised training.
result DiffDenoise outperforms state-of-the-art methods in medical image denoising.
A new neural network approach for medical image reconstruction.
problem Ill-posed large-scale inverse problems in medical imaging.
method Decoupling regularization from data consistency using neural network priors.
result The method outperforms existing techniques in various quantitative measures.
Unified deep learning predicts Parkinson's disease from medical images.
problem Diagnosing Parkinson's disease accurately from medical images.
method Transfer learning and domain adaptation using deep convolutional and recurrent neural networks.
result The approach effectively predicts Parkinson's disease across different medical environments.
Deep neural network architectures have traditionally been designed and explored with human expertise in a long-lasting trial-and-error process. This process requires huge amount of time, expertise, and resources. To address this tedious problem, we propose a novel algorithm to optimally find hyperparameters of a deep n…
Deep learning improves medical ultrasound image segmentation accuracy.
problem Improving accuracy in medical ultrasound image segmentation.
method Categorizes deep learning methods into six groups and analyzes current representative algorithms.
result Current methods show significant improvement in image segmentation accuracy.
This work abstracts deep neural networks into concept graphs for better interpretability in medical tasks.
problem Lack of interpretability in deep learning models, especially in medical domains.
method Developed a graphical representation of medical image processing models to understand concept-based reasoning.
result Extracted a concept-level graph that reveals the decision-making process of deep learning models.
This paper reviews deep learning for multi-modality medical image segmentation.
problem Improving segmentation accuracy in medical images using multiple modalities.
method Overview of deep learning and multi-modal medical image segmentation, analysis of different network architectures and fusion strategies.
result Later fusion of modalities can lead to more accurate segmentation results.
This paper addresses privacy in federated learning for medical imaging by estimating model uncertainty.
problem Privacy concerns in federated learning for medical imaging.
method Federated Learning (FL) for collaborative model training while preserving patient data privacy.
result Accurate uncertainty estimation in federated learning for medical imaging.
Paper detects biases in medical imaging ML models using counterfactual analysis.
problem Bias in medical imaging ML models negatively impacts generalization performance.
method Counterfactual invariance framework combining conditional latent diffusion models and statistical hypothesis testing.
result The method identifies and quantifies biases without direct access to counterfactual data.
A new model answers questions about medical images.
problem Lack of transparency in deep learning models for medical imaging.
method A question-centric model that queries image models directly.
result The model achieves equal or higher accuracy than existing methods.
This paper tackles label noise in deep learning for medical image analysis.
problem Label noise impacts deep learning models in medical image analysis.
method Review of state-of-the-art techniques and experiments with label noise in medical datasets.
result Developed new methods to combat label noise in deep models for medical image analysis.
Study compares DL models for medical image segmentation, finds synergistic ensemble strategies improve performance.
problem Improving DL models for specialized medical image segmentation using transfer learning.
method Detailed comparisons of TII and LMI models for binary segmentation of medical images.
result Ensemble strategies improve performance by 10% in certain scenarios.
The computer-aided analysis of medical scans is a longstanding goal in the medical imaging field. Currently, deep learning has became a dominant methodology for supporting pathologists and radiologist. Deep learning algorithms have been successfully applied to digital pathology and radiology, nevertheless, there are st…
This work provides a strong baseline for the problem of multi-source multi-target domain adaptation and generalization in medical imaging. Using a diverse collection of ten chest X-ray datasets, we empirically demonstrate the benefits of training medical imaging deep learning models on varied patient populations for ge…
Paper tackles medical image diagnosis with unsupervised domain adaptation.
problem Limited labeled samples and label noise in medical images.
method Collaborative Unsupervised Domain Adaptation (UDA) algorithm.
result Empirical results show superiority of the proposed method.
Deep learning has significant potential for medical imaging. However, since the incident rate of each disease varies widely, the frequency of classes in a medical image dataset is imbalanced, leading to poor accuracy for such infrequent classes. One possible solution is data augmentation of infrequent classes using syn…
Deep learning models designed for visual classification tasks on natural images have become prevalent in medical image analysis. However, medical images differ from typical natural images in many ways, such as significantly higher resolutions and smaller regions of interest. Moreover, both the global structure and loca…
Deep learning model improves X-ray disease detection accuracy in Thai patients.
problem Lack of large-scale validation of AI algorithms for medical image diagnosis in Thailand.
method Development and testing of a deep learning algorithm using 421,859 local chest radiographs.
result Convolutional neural networks achieve remarkable performance in detecting 13 common abnormality conditions on chest X-ray.
Transfer learning from natural image datasets, particularly ImageNet, using standard large models and corresponding pretrained weights has become a de-facto method for deep learning applications to medical imaging. However, there are fundamental differences in data sizes, features and task specifications between natura…
PAC-Bayesian method improves deep learning generalization in medical imaging.
problem Overfitting in deep networks for medical imaging datasets.
method PAC-Bayesian framework applied to large (stochastic) networks.
result PAC-Bayesian bounds are competitive and more explainable than simpler methods.
This paper benchmarks OoDD methods for medical imaging.
problem Medical models trained for one domain may fail on images from a different domain.
method Defined 3 categories of OoD examples and benchmarked methods in 3 medical imaging domains.
result Simple binary classifier on feature representation yields best accuracy and AUPRC.
Generative Adversarial Networks (GANs) and their extensions have carved open many exciting ways to tackle well known and challenging medical image analysis problems such as medical image de-noising, reconstruction, segmentation, data simulation, detection or classification. Furthermore, their ability to synthesize imag…
The paper explores how neural networks generalize differently from natural and medical images.
problem Discrepancies in generalization error between natural and medical images.
method Established and empirically validated a generalization scaling law with respect to intrinsic dataset properties.
result Higher intrinsic 'label sharpness' of medical images leads to higher adversarial vulnerability.
Incorporating human domain knowledge for breast tumor diagnosis is challenging, since shape, boundary, curvature, intensity, or other common medical priors vary significantly across patients and cannot be employed. This work proposes a new approach for integrating visual saliency into a deep learning model for breast t…