Plasmodium falciparum malaria still poses one of the greatest threats to human life with over 200 million cases globally leading to half-million deaths annually. Of these, 90% of cases and of the mortality occurs in sub-Saharan Africa, mostly among children. Although malaria prediction systems are central to the 2016-2…
On-device research index
arXiv research
A locally-built, LLM-digested index of recent arXiv papers in quant finance, geometry/topology, and statistical ML — keyword search served straight from SQLite on this machine.
168,657 papers · 148 categories
Trend · papers per month
48 results for “malaria prevalence”
New model maps malaria prevalence across Kenya's changing administrative boundaries.
problem Mapping disease prevalence with changing administrative boundaries.
method Combines deep learning and MCMC with aggVAE for disease mapping.
result Solves the change-of-support problem in disease surveillance.
Extends diffusion models to handle exponential family distributions for inverse problems.
problem Intractability of likelihood score for non-Gaussian observations.
method Evidence trick to approximate likelihood score for exponential family distributions.
result Effective Bayesian inference on complex Poisson processes and malaria prevalence prediction.
Hybrid model integrates GATv2 and geostatistics for better spatial prediction and uncertainty.
problem Accurate spatial prediction and uncertainty quantification in epidemiology and risk analysis.
method Integrates Graph Attention Network (GATv2) with model-based geostatistics (MBG) to capture relational and spatial dependencies.
result Hybrid model improves predictive accuracy and uncertainty quantification compared to standalone models.
Mobile apps and machine learning improve malaria prevention and treatment.
problem High malaria cases and deaths in low-income countries.
method Adaptive interventions using mobile health apps and machine learning.
result Increased malaria testing, adherence, and provider skills.
Malaria is a life-threatening disease affecting millions. Microscopy-based assessment of thin blood films is a standard method to (i) determine malaria species and (ii) quantitate high-parasitemia infections. Full automation of malaria microscopy by machine learning (ML) is a challenging task because field-prepared sli…
Mosquitoes are a major vector for malaria, causing hundreds of thousands of deaths in the developing world each year. Not only is the prevention of mosquito bites of paramount importance to the reduction of malaria transmission cases, but understanding in more forensic detail the interplay between malaria, mosquito vec…
Multinomial logistic model for coinfection diagnosis between arbovirus and malaria in Kedougoustat.AP
In tropical regions, populations continue to suffer morbidity and mortality from malaria and arboviral diseases. In Kedougou (Senegal), these illnesses are all endemic due to the climate and its geographical position. The co-circulation of malaria parasites and arboviruses can explain the observation of coinfected case…
Improving Malaria Parasite Detection from Red Blood Cell using Deep Convolutional Neural Networkseess.IV
Malaria is a female anopheles mosquito-bite inflicted life-threatening disease which is considered endemic in many parts of the world. This article focuses on improving malaria detection from patches segmented from microscopic images of red blood cell smears by introducing a deep convolutional neural network. Compared …
Malaria Likelihood Prediction By Effectively Surveying Households Using Deep Reinforcement Learningcs.LG
We build a deep reinforcement learning (RL) agent that can predict the likelihood of an individual testing positive for malaria by asking questions about their household. The RL agent learns to determine which survey question to ask next and when to stop to make a prediction about their likelihood of malaria based on t…
Mosquitoes are the only known vector of malaria, which leads to hundreds of thousands of deaths each year. Understanding the number and location of potential mosquito vectors is of paramount importance to aid the reduction of malaria transmission cases. In recent years, deep learning has become widely used for bioacous…
Malaria is a serious infectious disease that is responsible for over half million deaths yearly worldwide. The major cause of these mortalities is late or inaccurate diagnosis. Manual microscopy is currently considered as the dominant diagnostic method for malaria. However, it is time consuming and prone to human error…
Regression Trees and Random forest based feature selection for malaria risk exposure predictionstat.ML
This paper deals with prediction of anopheles number, the main vector of malaria risk, using environmental and climate variables. The variables selection is based on an automatic machine learning method using regression trees, and random forests combined with stratified two levels cross validation. The minimum threshol…
Sequential decision making is a typical problem in reinforcement learning with plenty of algorithms to solve it. However, only a few of them can work effectively with a very small number of observations. In this report, we introduce the progress to learn the policy for Malaria Control as a Reinforcement Learning proble…
Epidemiology simulations have become a fundamental tool in the fight against the epidemics of various infectious diseases like AIDS and malaria. However, the complicated and stochastic nature of these simulators can mean their output is difficult to interpret, which reduces their usefulness to policymakers. In this pap…
Kernel interpolation speeds up online Gaussian process updates.
problem Efficiently updating Gaussian process posteriors with new data.
method Structured kernel interpolation for constant-time updates.
result Exact inference maintained with constant-time updates.
In this study, we propose an automatic learning method for variables selection based on Lasso in epidemiology context. One of the aim of this approach is to overcome the pretreatment of experts in medicine and epidemiology on collected data. These pretreatment consist in recoding some variables and to choose some inter…
New method disentangles hidden data structures using HSIC and supervision.
problem Tackles the challenge of interpreting high-dimensional data.
method Supervised Independent Subspace Principal Component Analysis (sisPCA) using HSIC.
result Identifies and separates hidden data structures effectively.
Proposes PQ, a more precise Bayesian quantifier for prevalence estimation.
problem Uncertainty quantification in prevalence estimation.
method Bayesian quantification methods, focusing on precision and coverage.
result PQ provides more precise and well-calibrated uncertainty quantification.
We present the first fully variational Bayesian inference scheme for continuous Gaussian-process-modulated Poisson processes. Such point processes are used in a variety of domains, including neuroscience, geo-statistics and astronomy, but their use is hindered by the computational cost of existing inference schemes. Ou…
The paper discusses thresholds and bounds for accuracy in binary classification systems.
problem The accuracy of binary classification systems and its dependence on prevalence.
method Analyzing the precision-prevalence curve and negative predictive value-prevalence curve to find thresholds and bounds.
result Thresholds ( and ) bound various accuracy metrics (Fβ, F1, FM, MCC) and the ratio of maximum accuracy to prevalence.
Measuring the Prevalence of Policy Violating Content with ML Assisted Sampling and LLM Labelingcs.LG
Measures policy-violating content prevalence with ML-assisted sampling and LLM labeling.
problem Accurate measurement of content violations that are often rare and costly to label.
method Design-based measurement system using ML-assisted probability sampling and LLM labeling.
result Produces unbiased prevalence estimates with confidence intervals and dashboard drilldowns.
Analysis of Diagnostics (Part II): Prevalence, Linear Independence, and Unsupervised Learningstat.ML
Paper explores how unsupervised learning can be understood through linear algebra concepts.
problem Understanding unsupervised learning through linear algebra concepts.
method Introducing the concept of linearly independent populations and using them to solve for prevalence values.
result Unsupervised learning can be realized as a generalization of supervised learning.
Point estimation of class prevalences in the presence of data set shift has been a popular research topic for more than two decades. Less attention has been paid to the construction of confidence and prediction intervals for estimates of class prevalences. One little considered question is whether or not it is necessar…
Bayesian method corrects bias in imbalanced datasets.
problem Prevalence bias in machine learning datasets.
method Bayesian risk minimization framework, bias-corrected loss function.
result Corrected loss function improves model performance.
Analysis of Diagnostics (Part I): Prevalence, Uncertainty Quantification, and Machine Learningstat.ML
This study connects prevalence and machine learning for diagnostic testing.
problem Uncertainty quantification in machine learning for diagnostic tests.
method Developed a numerical homotopy algorithm to estimate classification boundaries and quantify uncertainty.
result The proposed method stabilizes uncertainty quantification in machine learning for diagnostic tests.
Study finds AUC is most consistent across different prevalence in binary classification.
problem Consistency of model evaluation metrics across varying prevalence in binary classification.
method Analysis of 156 data scenarios with 18 metrics, 5 models, and a random guess model.
result AUC has the smallest variance in evaluating individual models and ranking of models.
Bayesian methods improve group testing for identifying infected patients.
problem Identifying infected patients from group testing results with false positives.
method Bayesian inference and belief propagation algorithm, combined with expectation-maximization method.
result True-positive rate improved by considering credible intervals.
In life sciences, the experts generally use empirical knowledge to recode variables, choose interactions and perform selection by classical approach. The aim of this work is to perform automatic learning algorithm for variables selection which can lead to know if experts can be help in they decision or simply replaced …
We study the problem of community detection in multi-layer networks, where pairs of nodes can be related in multiple modalities. We introduce a general framework, i.e., mixture multi-layer stochastic block model (MMSBM), which includes many earlier models as special cases. We propose a tensor-based algorithm (TWIST) to…
The paper proves prevalent existence and partially determines moduli space of area-minimizing surfaces with fractal singular sets.
problem Existence and moduli space of area-minimizing surfaces with fractal singular sets.
method Proof of prevalent existence, determination of moduli space, refinement of strata.
result Sharp results on moduli space and refinement of strata, showing fractal singularities do not completely dissolve under generic perturbations.
Computer-aided detection has been a research area attracting great interest in the past decade. Machine learning algorithms have been utilized extensively for this application as they provide a valuable second opinion to the doctors. Despite several machine learning models being available for medical imaging applicatio…
While a typical supervised learning framework assumes that the inputs and the outputs are measured at the same levels of granularity, many applications, including global mapping of disease, only have access to outputs at a much coarser level than that of the inputs. Aggregation of outputs makes generalization to new in…
Simulation-based inference aids in predicting disease dynamics for health policy.
problem Predicting disease dynamics to inform public health interventions.
method Simulation-based inference using machine learning.
result Potential for efficient interpretable Bayesian inference in epidemiological models.
In de novo drug design, computational strategies are used to generate novel molecules with good affinity to the desired biological target. In this work, we show that recurrent neural networks can be trained as generative models for molecular structures, similar to statistical language models in natural language process…
We consider the problem of domain generalization, namely, how to learn representations given data from a set of domains that generalize to data from a previously unseen domain. We propose the Domain Invariant Variational Autoencoder (DIVA), a generative model that tackles this problem by learning three independent late…
Develops RES metrics for stable rare-event forecasting evaluation.
problem Challenges in evaluating forecasts of rare events.
method Rare-event-stable (RES) metrics designed to maintain stable thresholds under extreme rarity.
result RES metrics maintain stable thresholds, consistent model rankings, and near-complete prevalence invariance.
New method adapts to structural shifts in graph data for better label prevalence estimation.
problem Structural shifts in graph data affect label prevalence estimation.
method Importance sampling variant of KDEy quantification approach.
result Adapts to structural shifts and outperforms standard approaches.
Estimates disease prevalence using non-ignorable missing data in health surveys.
problem Estimating disease prevalence in non-representative samples with non-ignorable missing data.
method Connects auxiliary proxy variable framework to label shift setting, uses high-dimensional covariates without generative models.
result Fails to account for non-ignorable missingness can lead to significant misestimations.
A scalable online method for Gaussian processes that improves decision-making in various applications.
problem Scalability issues with Gaussian processes for online decision-making.
method Online variational conditioning (OVC) for SVGPs.
result OVC enables efficient online learning and decision-making with SVGPs.
The estimation of class prevalence, i.e., the fraction of a population that belongs to a certain class, is a very useful tool in data analytics and learning, and finds applications in many domains such as sentiment analysis, epidemiology, etc. For example, in sentiment analysis, the objective is often not to estimate w…
The Centers for Disease Control and Prevention (CDC) coordinates a labor-intensive process to measure the prevalence of autism spectrum disorder (ASD) among children in the United States. Random forests methods have shown promise in speeding up this process, but they lag behind human classification accuracy by about 5%…
Machine learning research for developing countries can demonstrate clear sustainable impact by delivering actionable and timely information to in-country government organisations (GOs) and NGOs in response to their critical information requirements. We co-create products with UK and in-country commercial, GO and NGO pa…
Reconstruction error is a prevalent score used to identify anomalous samples when data are modeled by generative models, such as (variational) auto-encoders or generative adversarial networks. This score relies on the assumption that normal samples are located on a manifold and all anomalous samples are located outside…
HistNetQ improves quantification tasks by optimizing loss functions and eliminating label requirements.
problem Quantification of class prevalence in bags of examples.
method Permutation-invariant Histograms and deep neural networks.
result HistNetQ outperforms other quantification methods and optimizes custom loss functions.
In this paper, we present a new approach to time series forecasting. Time series data are prevalent in many scientific and engineering disciplines. Time series forecasting is a crucial task in modeling time series data, and is an important area of machine learning. In this work we developed a novel method that employs …
Novel unsupervised scheme for highly imbalanced and overlapping datasets.
problem Highly imbalanced and overlapping classes in medical datasets.
method Unsupervised domain adaptation scheme based on Quantification.
result High quality results for Quantification and Domain Adaptation.
Investors in Bitcoin exhibit the disposition effect, selling winners and holding losers.
problem The disposition effect in cryptoassets, specifically Bitcoin.
method Using transaction data from cryptoasset exchanges, the study investigated Bitcoin investors' behavior.
result Bitcoin investors exhibit the disposition effect, with intensity varying over time.