This project applies Mask R-CNN method to ISIC 2018 challenge tasks: lesion boundary segmentation (task1), lesion attributes detection (task 2), lesion diagnosis (task 3), a solution to the latter is using a trained model for task 1 and a simple voting procedure.
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48 results for “lesions”
Automated detection of MS lesions improves to 67% with 7T MRI.
problem Accurate detection of small, scarce cortical lesions in MS patients.
method 3D U-Net with brain tissue segmentation, supervised training on 7T MRI.
result 67% lesion detection rate with 42% false positives.
Improved inter-scanner MS lesion segmentation through adversarial training.
problem Variability in MRI scanner or protocol differences affect automated lesion segmentation accuracy.
method Trained a CNN base model and a discriminator model adversarially on multi-scanner longitudinal data.
result Adversarial training improves inter-scanner consistency of lesion segmentations.
Deep neural networks map brain lesions to deficits for better brain function understanding.
problem Mapping the functional brain organization from pathological lesions.
method Deep generative neural network architectures, specifically variational convolutional volumetric auto-encoders.
result Our model outperforms established methods in lesion-deficit inference across various scenarios.
Paper tackles rDR classification and lesion segmentation using self-supervised equivariant learning and attention-based MIL.
problem Classifying rDR and segmenting lesions from image-level labels.
method Integrates self-supervised equivariant attention mechanism (SEAM) with attention-based multi-instance learning (MIL).
result Achieved AU ROC of 0.958 on Eyepacs dataset, outperforming state-of-the-art.
LcGAN generates synthetic CT images for hemorrhagic lesion segmentation.
problem Scarce training data for hemorrhagic lesion segmentation.
method Lesion conditional Generative Adversarial Network (LcGAN) for synthetic image generation.
result Segmentation improved by 12.8% with synthetic data augmentation.
For several skin conditions such as vitiligo, accurate segmentation of lesions from skin images is the primary measure of disease progression and severity. Existing methods for vitiligo lesion segmentation require manual intervention. Unfortunately, manual segmentation is time and labor-intensive, as well as irreproduc…
Deep Quantile Regression for Uncertainty Estimation in Unsupervised and Supervised Lesion Detectioncs.LG
Proposes deep quantile regression for uncertainty estimation in lesion detection.
problem Uncertainty quantification in lesion detection for critical applications.
method Quantile regression for aleatoric uncertainty, Variational AutoEncoder (VAE) with QR-VAE, binary quantile regression (BQR).
result Effective quantification of uncertainty in lesion detection and segmentation.
Multiple sclerosis (MS) is an inflammatory demyelinating disease of the central nervous system (CNS) that results in focal injury to the grey and white matter. The presence of white matter lesions biases morphometric analyses such as registration, individual longitudinal measurements and tissue segmentation for brain v…
This manuscript addresses the problem of the automatic lesion boundary detection in dermoscopy, using deep neural networks. An approach is based on the adaptation of the U-net convolutional neural network with skip connections for lesion boundary segmentation task. I hope this paper could serve, to some extent, as an e…
In this work, we present a comparison of a shallow and a deep learning architecture for the automated segmentation of white matter lesions in MR images of multiple sclerosis patients. In particular, we train and test both methods on early stage disease patients, to verify their performance in challenging conditions, mo…
Segmentation of skin lesions based on fuzzy classification of pixels and histogram thresholdingcs.CV
This paper proposes an innovative method for segmentation of skin lesions in dermoscopy images developed by the authors, based on fuzzy classification of pixels and histogram thresholding.
Discovering oral cavity cancer (OCC) at an early stage is an effective way to increase patient survival rate. However, current initial screening process is done manually and is expensive for the average individual, especially in developing countries worldwide. This problem is further compounded due to the lack of speci…
Computer-aided diagnosis systems for classification of different type of skin lesions have been an active field of research in recent decades. It has been shown that introducing lesions and their attributes masks into lesion classification pipeline can greatly improve the performance. In this paper, we propose a framew…
Insufficient training data and severe class imbalance are often limiting factors when developing machine learning models for the classification of rare diseases. In this work, we address the problem of classifying bone lesions from X-ray images by increasing the small number of positive samples in the training set. We …
Ischaemic stroke is a medical condition caused by occlusion of blood supply to the brain tissue thus forming a lesion. A lesion is zoned into a core associated with irreversible necrosis typically located at the center of the lesion, while reversible hypoxic changes in the outer regions of the lesion are termed as the …
PersonalizedUS assesses breast cancer risk with local coverage guarantees.
problem Manual BI-RADS scoring leads to unnecessary biopsies and mental health burden.
method Conformal prediction for precise, personalized risk estimates.
result Local coverage guarantees with high sensitivity and specificity.
Dual-edge spatial Jacobian image graph for interpretable diabetic retinopathy grading
problem Automated diabetic retinopathy grading from color fundus photographs
method Dual-edge spatial-Jacobian image graph
result 0.8076 accuracy, 0.8312 quadratic weighted kappa, 0.5915 macro-F1, 0.9330 adjacent-grade accuracy
The volume of stroke lesion is the gold standard for predicting the clinical outcome of stroke patients. However, the presence of stroke lesion may cause neural disruptions to other brain regions, and these potentially damaged regions may affect the clinical outcome of stroke patients. In this paper, we introduce the t…
Automated skin lesion analysis is very crucial in clinical practice, as skin cancer is among the most common human malignancy. Existing approaches with deep learning have achieved remarkable performance on this challenging task, however, heavily relying on large-scale labelled datasets. In this paper, we present a nove…
This paper explains the method used in the segmentation challenge (Task 1) in the International Skin Imaging Collaboration's (ISIC) Skin Lesion Analysis Towards Melanoma Detection challenge held in 2018. We have trained a U-Net network to perform the segmentation. The key elements for the training were first to adjust …
This study's objective was to segment spinal metastases in diagnostic MR images using a deep learning-based approach. Segmentation of such lesions can present a pivotal step towards enhanced therapy planning and validation, as well as intervention support during minimally invasive and image-guided surgeries like radiof…
Deep learning methods, and in particular convolutional neural networks (CNNs), have led to an enormous breakthrough in a wide range of computer vision tasks, primarily by using large-scale annotated datasets. However, obtaining such datasets in the medical domain remains a challenge. In this paper, we present methods f…
High predictive performance and ease of use and interpretability are important requirements for the applicability of a computer-aided diagnosis (CAD) to human reading studies. We propose a CAD system specifically designed to be more comprehensible to the radiologist reviewing screening breast MRI studies. Multiparametr…
CNNs help diagnose diabetic retinopathy by localizing lesions.
problem Diabetic retinopathy diagnosis requires identifying lesions in fundus images.
method Post-attention technique (Grad-CAM) on deep learning models' penultimate layer.
result InceptionV3 model achieves best performance and localizes lesions better.
A novel deep learning architecture (XmasNet) based on convolutional neural networks was developed for the classification of prostate cancer lesions, using the 3D multiparametric MRI data provided by the PROSTATEx challenge. End-to-end training was performed for XmasNet, with data augmentation done through 3D rotation a…
Method screens similar capsule endoscopic images, reducing doctor workload and improving accuracy.
problem Time-consuming and high error rate in manual inspection of large numbers of similar capsule endoscopic images.
method Structural similarity analysis of visually salient areas and hierarchical clustering.
result 76% reduction in similar images, 100% lesion recall, 18-minute average play time.
This short report describes our submission to the ISIC 2018 Challenge in Skin Lesion Analysis Towards Melanoma Detection for Task1 and Task 3. This work has been accomplished by a team of researchers at the University of Dayton Signal and Image Processing Lab. Our proposed approach is computationally efficient are comb…
Algorithms for Magnetic Resonance (MR) image reconstruction from undersampled measurements exploit prior information to compensate for missing k-space data. Deep learning (DL) provides a powerful framework for extracting such information from existing image datasets, through learning, and then using it for reconstructi…
On Interpretability of Deep Learning based Skin Lesion Classifiers using Concept Activation Vectorscs.LG
Deep learning skin lesion classifier explained using CAVs.
problem Limited acceptance of deep learning CAD systems due to opaque decision-making.
method Mapped human understandable concepts to RECOD model using CAVs.
result Classifier learns and encodes disease-related concepts in its latent representation.
A new method combines OCSVM with representation learning for UAD.
problem Detect anomalies without labeled data, especially in rare or unavailable cases.
method Custom loss formulation that aligns latent features with OCSVM decision boundary.
result Succeeds in detecting small, non-hyperintense lesions in MRI.
ABC improves uncertainty quantification in LLMs for clinical diagnostics.
problem Overconfident and poorly calibrated estimates of LLMs in clinical domains.
method Approximate Bayesian Computation (ABC) for likelihood-free inference.
result Improves accuracy by up to 46.9%, reduces Brier scores by 74.4%, and enhances calibration.
The paper presents algorithms for diagnosing Pathological Myopia and detecting retinal structures.
problem Diagnosing Pathological Myopia and detecting retinal structures in fundus images.
method The approach uses Deep Learning techniques, including transfer learning with Xception and YOLO architecture.
result The method has shown satisfactory results in the Pathologic Myopia Challenge.
The rapid development of deep learning, a family of machine learning techniques, has spurred much interest in its application to medical imaging problems. Here, we develop a deep learning algorithm that can accurately detect breast cancer on screening mammograms using an "end-to-end" training approach that efficiently …
Extends Shifts dataset for MS lesion segmentation and marine vessel power estimation.
problem Distributional shift in training and deployment data for ML models.
method Develops new datasets for high-risk industrial applications.
result Demonstrates robustness and uncertainty estimation in new industrial tasks.
FalconBC improves patient-specific cardiovascular modeling by estimating boundary conditions efficiently.
problem Efficiently estimating boundary conditions in patient-specific cardiovascular models, especially in open-loop models and anatomies with lesions.
method A general amortized inference framework based on probabilistic flow that treats clinical targets and anatomies as conditioning variables.
result Demonstrated on two patient-specific models, FalconBC improves efficiency and accuracy in estimating boundary conditions.
Deep Learning Enables Automatic Detection and Segmentation of Brain Metastases on Multi-Sequence MRIeess.IV
Detecting and segmenting brain metastases is a tedious and time-consuming task for many radiologists, particularly with the growing use of multi-sequence 3D imaging. This study demonstrates automated detection and segmentation of brain metastases on multi-sequence MRI using a deep learning approach based on a fully con…
Study on learning to defer to multiple experts with consistent surrogates and confidence calibration.
problem Addressing the open problems of consistent surrogates, confidence calibration, and ensembling of experts.
method Derive two consistent surrogates (softmax and OvA) and propose a conformal inference technique for choosing experts.
result The OvA-based loss does not cause mis-calibration propagation, while the softmax-based loss does.
A statistical toolbox for analyzing model performance in medical imaging.
problem Analyzing model performance by patient and recording properties, especially in medical imaging.
method Selection of appropriate performance metrics, correction of multiple comparisons, and finding interesting subgroups.
result Enables rigorous assessment of model performance for potential subgroup disparities.
Mammography is the most effective and available tool for breast cancer screening. However, the low positive predictive value of breast biopsy resulting from mammogram interpretation leads to approximately 70% unnecessary biopsies with benign outcomes. Data mining algorithms could be used to help physicians in their dec…
Image segmentation is widely used in a variety of computer vision tasks, such as object localization and recognition, boundary detection, and medical imaging. This thesis proposes deep learning architectures to improve automatic object localization and boundary delineation for salient object segmentation in natural ima…
In machine learning, novelty detection is the task of identifying novel unseen data. During training, only samples from the normal class are available. Test samples are classified as normal or abnormal by assignment of a novelty score. Here we propose novelty detection methods based on training variational autoencoders…
OTRE uses OT to improve retinal images, outperforming existing methods.
problem Improving quality of non-mydriatic retinal images for accurate diagnoses.
method OT theory for image-to-image translation, regularization by enhancing.
result OTRE outperforms state-of-the-art methods on various retinal image tasks.
An overview of the applications of deep learning in ophthalmic diagnosis using retinal fundus images is presented. We also review various retinal image datasets that can be used for deep learning purposes. Applications of deep learning for segmentation of optic disk, blood vessels and retinal layer as well as detection…
A new approach to VAEs tackles variance shrinkage using quantile regression.
problem Variance shrinkage in VAEs leads to underestimation of uncertainty.
method Using quantile regression to estimate mean and variance, avoiding shrinkage.
result Our approach effectively detects anomalies and improves lesion detection.
GeoTop resolves topological ambiguity in diagnostic imaging using geometric-topological analysis.
problem Topological equivalence between benign and malignant structures in diagnostic images.
method Combines Topological Data Analysis and Lipschitz-Killing Curvatures to resolve ambiguity.
result Achieves 3.6% accuracy improvement and reduces false positives/negatives by 15-18%.
Bias in training data affects diagnostic algorithms' performance.
problem Bias in training data leads to biased predictions in diagnostic algorithms.
method Survey of MICCAI 2018 proceedings, analysis of a skin lesions dataset, adversarial training setup.
result Classifier performance varies significantly between subgroups based on age and sex.
A Class of Conjugate Priors for Multinomial Probit Models which Includes the Multivariate Normal Onestat.ME
New conjugate priors improve Bayesian inference for multinomial probit models.
problem Lack of tractable conjugate priors for efficient Bayesian inference in multinomial probit models.
method Unified skew-normal (SUN) distributions as conjugate priors, leading to improved posterior inference and classification.
result Improved computational methods for posterior inference and classification, especially in high dimensions.