Paper tackles dermoscopy lesion boundary detection using deep learning.
problem Automatic detection of lesion boundaries in dermoscopy images.
method Adapted U-net convolutional neural network with skip connections.
result Demonstrates effectiveness of deep learning in lesion boundary segmentation.
This project applies Mask R-CNN method to ISIC 2018 challenge tasks: lesion boundary segmentation (task1), lesion attributes detection (task 2), lesion diagnosis (task 3), a solution to the latter is using a trained model for task 1 and a simple voting procedure.
Proposes deep quantile regression for uncertainty estimation in lesion detection.
problem Uncertainty quantification in lesion detection for critical applications.
method Quantile regression for aleatoric uncertainty, Variational AutoEncoder (VAE) with QR-VAE, binary quantile regression (BQR).
result Effective quantification of uncertainty in lesion detection and segmentation.
FalconBC improves patient-specific cardiovascular modeling by estimating boundary conditions efficiently.
problem Efficiently estimating boundary conditions in patient-specific cardiovascular models, especially in open-loop models and anatomies with lesions.
method A general amortized inference framework based on probabilistic flow that treats clinical targets and anatomies as conditioning variables.
result Demonstrated on two patient-specific models, FalconBC improves efficiency and accuracy in estimating boundary conditions.
Automated detection of MS lesions improves to 67% with 7T MRI.
problem Accurate detection of small, scarce cortical lesions in MS patients.
method 3D U-Net with brain tissue segmentation, supervised training on 7T MRI.
result 67% lesion detection rate with 42% false positives.
Improved inter-scanner MS lesion segmentation through adversarial training.
problem Variability in MRI scanner or protocol differences affect automated lesion segmentation accuracy.
method Trained a CNN base model and a discriminator model adversarially on multi-scanner longitudinal data.
result Adversarial training improves inter-scanner consistency of lesion segmentations.
Deep neural networks map brain lesions to deficits for better brain function understanding.
problem Mapping the functional brain organization from pathological lesions.
method Deep generative neural network architectures, specifically variational convolutional volumetric auto-encoders.
result Our model outperforms established methods in lesion-deficit inference across various scenarios.
Paper tackles rDR classification and lesion segmentation using self-supervised equivariant learning and attention-based MIL.
problem Classifying rDR and segmenting lesions from image-level labels.
method Integrates self-supervised equivariant attention mechanism (SEAM) with attention-based multi-instance learning (MIL).
result Achieved AU ROC of 0.958 on Eyepacs dataset, outperforming state-of-the-art.
CNN automates vitiligo lesion segmentation quickly and accurately.
problem Manual segmentation of vitiligo lesions is time-consuming and inconsistent.
method U-Net architecture with modified contracting path, followed by watershed algorithm refinement.
result CNN achieves 73.6% Jaccard Index, significantly outperforming state-of-the-art methods.
New method fills MS lesions more realistically and naturally.
problem Lesions in MS brain scans bias morphometric analyses.
method Non-local partial convolutions (NLPC) integrating Unet-like network and non-local module.
result NLPC generates inpainted regions that appear more realistic and natural.
LcGAN generates synthetic CT images for hemorrhagic lesion segmentation.
problem Scarce training data for hemorrhagic lesion segmentation.
method Lesion conditional Generative Adversarial Network (LcGAN) for synthetic image generation.
result Segmentation improved by 12.8% with synthetic data augmentation.
Deep learning improves automatic image segmentation.
problem Automatic object localization and boundary delineation in images and medical scans.
method Proposed and evaluated novel dilated dense encoder-decoder architectures for salient object segmentation and lesion localization in medical images.
result Proposed architectures outperform state-of-the-art models in accuracy and efficiency.
Generative model boosts bone lesion classification with augmented data.
problem Class imbalance and limited training data for bone lesion classification.
method Cycle-consistent GAN for image patch translation across bones.
result Generative augmentation improves classifier performance on held-out test set.
AI detects oral pre-cancerous lesions with high accuracy.
problem Manual screening of oral cavity cancer is expensive and lacks specialists.
method Deep convolutional neural networks (DCNNs) using transfer learning.
result DCNN models achieve high accuracy in distinguishing between benign and pre-cancerous tongue lesions.
In this work, we present a comparison of a shallow and a deep learning architecture for the automated segmentation of white matter lesions in MR images of multiple sclerosis patients. In particular, we train and test both methods on early stage disease patients, to verify their performance in challenging conditions, mo…
This paper proposes an innovative method for segmentation of skin lesions in dermoscopy images developed by the authors, based on fuzzy classification of pixels and histogram thresholding.
Paper presents an active learning method to reduce skin lesion analysis annotation cost.
problem High cost of manual annotation in skin lesion analysis.
method Decoupled sample selection criteria for informativeness and representativeness, combined with pixel space aggregation for data augmentation.
result 50% annotated data suffices for state-of-the-art performance, outperforming other methods.
This paper uses CNNs to automatically segment ischaemic stroke lesions from MRI sequences.
problem Automatically segmenting ischaemic stroke lesions from MRI sequences is challenging.
method Adversarial training of CNNs on multi-sequence MRI data.
result The method achieves high Dice scores for core and penumbra segmentation.
Computer-aided diagnosis systems for classification of different type of skin lesions have been an active field of research in recent decades. It has been shown that introducing lesions and their attributes masks into lesion classification pipeline can greatly improve the performance. In this paper, we propose a framew…
Efficient skin lesion analysis combines deep CNN and handcrafted features.
problem Skin lesion analysis for melanoma detection.
method Combines deep learning and handcrafted features, introduces hybrid features.
result 0.841 score on validation dataset using SVM classifier.
A new method combines OCSVM with representation learning for UAD.
problem Detect anomalies without labeled data, especially in rare or unavailable cases.
method Custom loss formulation that aligns latent features with OCSVM decision boundary.
result Succeeds in detecting small, non-hyperintense lesions in MRI.
PersonalizedUS assesses breast cancer risk with local coverage guarantees.
problem Manual BI-RADS scoring leads to unnecessary biopsies and mental health burden.
method Conformal prediction for precise, personalized risk estimates.
result Local coverage guarantees with high sensitivity and specificity.
Dual-edge spatial Jacobian image graph for interpretable diabetic retinopathy grading
problem Automated diabetic retinopathy grading from color fundus photographs
method Dual-edge spatial-Jacobian image graph
result 0.8076 accuracy, 0.8312 quadratic weighted kappa, 0.5915 macro-F1, 0.9330 adjacent-grade accuracy
Deep learning segments spinal metastases in MR images.
problem Challenges in accurately segmenting spinal metastases in MR images.
method Used a U-Net-like architecture trained on 40 clinical cases.
result Average Dice scores up to 77.6% and mean sensitivity rates up to 78.9%.
Paper introduces tractographic feature to predict stroke outcomes.
problem Predicting stroke outcomes using lesion volume alone is limited.
method Tractographic feature combining lesion and connectome data.
result Tractographic feature outperforms stroke volume in predicting mRS grades.
This paper explains the method used in the segmentation challenge (Task 1) in the International Skin Imaging Collaboration's (ISIC) Skin Lesion Analysis Towards Melanoma Detection challenge held in 2018. We have trained a U-Net network to perform the segmentation. The key elements for the training were first to adjust …
Deep learning methods, and in particular convolutional neural networks (CNNs), have led to an enormous breakthrough in a wide range of computer vision tasks, primarily by using large-scale annotated datasets. However, obtaining such datasets in the medical domain remains a challenge. In this paper, we present methods f…
Combines geometric and topological info for complex object boundaries.
problem Boundary estimation for images with complex topologies.
method Topological clustering for initialization of Bayesian active contour model.
result Smart initialization reduces user dependence and improves accuracy.
High predictive performance and ease of use and interpretability are important requirements for the applicability of a computer-aided diagnosis (CAD) to human reading studies. We propose a CAD system specifically designed to be more comprehensible to the radiologist reviewing screening breast MRI studies. Multiparametr…
CNNs help diagnose diabetic retinopathy by localizing lesions.
problem Diabetic retinopathy diagnosis requires identifying lesions in fundus images.
method Post-attention technique (Grad-CAM) on deep learning models' penultimate layer.
result InceptionV3 model achieves best performance and localizes lesions better.
GeoTop resolves topological ambiguity in diagnostic imaging using geometric-topological analysis.
problem Topological equivalence between benign and malignant structures in diagnostic images.
method Combines Topological Data Analysis and Lipschitz-Killing Curvatures to resolve ambiguity.
result Achieves 3.6% accuracy improvement and reduces false positives/negatives by 15-18%.
A novel deep learning architecture (XmasNet) based on convolutional neural networks was developed for the classification of prostate cancer lesions, using the 3D multiparametric MRI data provided by the PROSTATEx challenge. End-to-end training was performed for XmasNet, with data augmentation done through 3D rotation a…
Study improves breast lesion segmentation with limited in vivo data using simulated and natural images.
problem Challenges in automatic breast lesion segmentation due to limited annotated data.
method Pre-training a segmentation network on simulated and natural images, followed by fine-tuning with limited in vivo data.
result Fine-tuning improves dice score by 21% with as little as 19 in vivo images.
Method screens similar capsule endoscopic images, reducing doctor workload and improving accuracy.
problem Time-consuming and high error rate in manual inspection of large numbers of similar capsule endoscopic images.
method Structural similarity analysis of visually salient areas and hierarchical clustering.
result 76% reduction in similar images, 100% lesion recall, 18-minute average play time.
Algorithms for Magnetic Resonance (MR) image reconstruction from undersampled measurements exploit prior information to compensate for missing k-space data. Deep learning (DL) provides a powerful framework for extracting such information from existing image datasets, through learning, and then using it for reconstructi…
Deep learning skin lesion classifier explained using CAVs.
problem Limited acceptance of deep learning CAD systems due to opaque decision-making.
method Mapped human understandable concepts to RECOD model using CAVs.
result Classifier learns and encodes disease-related concepts in its latent representation.
ABC improves uncertainty quantification in LLMs for clinical diagnostics.
problem Overconfident and poorly calibrated estimates of LLMs in clinical domains.
method Approximate Bayesian Computation (ABC) for likelihood-free inference.
result Improves accuracy by up to 46.9%, reduces Brier scores by 74.4%, and enhances calibration.
Neural network classifies breast cancer lesions using global and local image features.
problem Classifying breast cancer lesions in medical images with high resolution and small regions of interest.
method Proposes a neural network that combines global saliency maps and local patches for pixel-level saliency maps.
result Achieves radiologist-level performance in screening mammography interpretation.
The paper presents algorithms for diagnosing Pathological Myopia and detecting retinal structures.
problem Diagnosing Pathological Myopia and detecting retinal structures in fundus images.
method The approach uses Deep Learning techniques, including transfer learning with Xception and YOLO architecture.
result The method has shown satisfactory results in the Pathologic Myopia Challenge.
The rapid development of deep learning, a family of machine learning techniques, has spurred much interest in its application to medical imaging problems. Here, we develop a deep learning algorithm that can accurately detect breast cancer on screening mammograms using an "end-to-end" training approach that efficiently …
Extends Shifts dataset for MS lesion segmentation and marine vessel power estimation.
problem Distributional shift in training and deployment data for ML models.
method Develops new datasets for high-risk industrial applications.
result Demonstrates robustness and uncertainty estimation in new industrial tasks.
Study on learning to defer to multiple experts with consistent surrogates and confidence calibration.
problem Addressing the open problems of consistent surrogates, confidence calibration, and ensembling of experts.
method Derive two consistent surrogates (softmax and OvA) and propose a conformal inference technique for choosing experts.
result The OvA-based loss does not cause mis-calibration propagation, while the softmax-based loss does.
Deep learning aids in automatic detection and segmentation of brain metastases.
problem Manual detection and segmentation of brain metastases is tedious and time-consuming.
method Deep learning approach using a fully convolutional neural network (CNN).
result Deep learning approach achieves high precision, recall, and Dice scores.
A statistical toolbox for analyzing model performance in medical imaging.
problem Analyzing model performance by patient and recording properties, especially in medical imaging.
method Selection of appropriate performance metrics, correction of multiple comparisons, and finding interesting subgroups.
result Enables rigorous assessment of model performance for potential subgroup disparities.
Mammography is the most effective and available tool for breast cancer screening. However, the low positive predictive value of breast biopsy resulting from mammogram interpretation leads to approximately 70% unnecessary biopsies with benign outcomes. Data mining algorithms could be used to help physicians in their dec…
In machine learning, novelty detection is the task of identifying novel unseen data. During training, only samples from the normal class are available. Test samples are classified as normal or abnormal by assignment of a novelty score. Here we propose novelty detection methods based on training variational autoencoders…
OTRE uses OT to improve retinal images, outperforming existing methods.
problem Improving quality of non-mydriatic retinal images for accurate diagnoses.
method OT theory for image-to-image translation, regularization by enhancing.
result OTRE outperforms state-of-the-art methods on various retinal image tasks.
A new approach to VAEs tackles variance shrinkage using quantile regression.
problem Variance shrinkage in VAEs leads to underestimation of uncertainty.
method Using quantile regression to estimate mean and variance, avoiding shrinkage.
result Our approach effectively detects anomalies and improves lesion detection.