New method uses patchworking to represent oriented matroids.
problem Representing oriented matroids from polyhedral structures.
method Variant of Viro's patchworking, controlled cell merging process.
result Achieved a combinatorial manifestation of patchworking.
Motivation: With the development of droplet based systems, massive single cell transcriptome data has become available, which enables analysis of cellular and molecular processes at single cell resolution and is instrumental to understanding many biological processes. While state-of-the-art clustering methods have been…
Statistical machine learning methods, especially nonparametric Bayesian methods, have become increasingly popular to infer clonal population structure of tumors. Here we describe the treeCRP, an extension of the Chinese restaurant process (CRP), a popular construction used in nonparametric mixture models, to infer the …
LEWIS merges LLMs without training, improving performance on specific tasks.
problem Limited performance improvement of merged models on specific benchmarks.
method Guided model merging using layer-wise sparsity and task-vector pruning.
result Improved model performance by up to 11.3% on math-solving tasks.
Study shows training duration impacts model merging quality, suggesting joint selection of duration and method.
problem Impact of expert training duration on model merging quality for large language models (LLMs).
method Systematically fine-tuned experts on five domains across three model sizes, evaluating five merging methods at each duration.
result Training duration affects merging quality, with simple averaging degrading sharply and sparsification-based methods performing well past the validation optimum.
Study shows training duration affects model merging quality, suggesting joint selection of duration and method.
problem Impact of expert training duration on model merging quality for large language models (LLMs).
method Systematically fine-tuned experts on five domains across three model sizes, evaluated five merging methods at each duration.
result Training duration and merging method should be chosen jointly, not independently.
EpiMer merges models by solving Fréchet mean on a Riemannian manifold.
problem Integrating knowledge from multiple models without retraining.
method EpiMer casts model merging as solving the Fréchet mean on a Riemannian manifold, restricting computation to a low-rank subspace.
result EpiMer outperforms flat-geometry methods on image classification tasks.
New Bayesian method improves Pareto front estimation in multitask finetuning.
problem Efficiently estimating Pareto fronts for multitask finetuning.
method Variational Model Merging using non-Gaussian posteriors.
result More flexible posteriors lead to better Pareto front estimates.
Deep reinforcement learning (DRL) on Markov decision processes (MDPs) with continuous action spaces is often approached by directly training parametric policies along the direction of estimated policy gradients (PGs). Previous research revealed that the performance of these PG algorithms depends heavily on the bias-var…
Study on merging predictors in causal and anticausal directions using CMAXENT.
problem Comparing merging predictors in causal and anticausal directions.
method Using CMAXENT as inductive bias, study differences in merging predictors.
result CMAXENT solution reduces to logistic regression in causal direction and LDA in anticausal direction.
In this paper, a similarity-driven cluster merging method is proposed for unsuper-vised fuzzy clustering. The cluster merging method is used to resolve the problem of cluster validation. Starting with an overspecified number of clusters in the data, pairs of similar clusters are merged based on the proposed similarity-…
New method merges MCMC samples without distributional assumptions.
problem Efficiently merging MCMC samples from disjoint subsets.
method Diffusion generative modelling for density approximation.
result Outperforms existing methods on high-dimensional problems.
Securely evaluates the benefits of merging datasets for causal estimation.
problem Challenges in assessing the value of merging datasets for causal treatment effect estimation.
method Cryptographically secure multi-party computation to evaluate Expected Information Gain (EIG) while ensuring privacy.
result Demonstrates the first privacy-preserving method for dataset acquisition tailored to causal estimation.
A new method merges neural networks using CCA to improve model performance.
problem Improving model accuracy through ensembling while reducing computational and storage costs.
method CCA Merge, a new model merging algorithm based on Canonical Correlation Analysis.
result CCA Merge leads to better model performance than past methods, especially in merging more than two models.
This paper reverses a construction by merging boundary critical points into an interior one.
problem Pushing interior critical points to the boundary and splitting them into two boundary points.
method Specific assumptions allow merging two boundary critical points into one interior critical point.
result Merging two boundary critical points into a single interior critical point.
Budgeted Stochastic Gradient Descent (BSGD) is a state-of-the-art technique for training large-scale kernelized support vector machines. The budget constraint is maintained incrementally by merging two points whenever the pre-defined budget is exceeded. The process of finding suitable merge partners is costly; it can a…
NAMEx merges experts using Nash bargaining for improved performance.
problem Sparse Mixture of Experts merging strategies lack a principled weighting mechanism.
method Reinterpreting expert merging through game theory, introducing Nash Merging and complex momentum.
result NAMEx consistently outperforms competing methods across various tasks and system sizes.
Efficiently estimates longitudinal networks by merging sparse networks.
problem Estimating longitudinal networks with sparse and temporal data.
method Adaptive network merging, tensor decomposition, point process.
result Significantly reduces estimation error and provides guidance for network merging.
A new method reduces task interference in model merging.
problem Model merging overlooks structural information and is susceptible to task interference.
method Task Singular Vectors (TSV) and TSV-Compress for compression and interference reduction.
result TSV-Merge significantly outperforms existing methods.
Discrete knot theory models use lattice-filtered graphs to detect merging knot components.
problem Detecting merging knot components in discrete models.
method Lattice-filtered move graphs to model knot types, identifying connected components and merge scales.
result Merge scale defined by connected components of lattice-filtered move graphs, with specific examples for the figure-eight knot.
Boosting strategies for merging vs. ensembling studies analyzed.
problem Deciding between merging and ensembling studies for boosting.
method Analytical transition point and bias-variance decomposition for boosting with linear learners.
result Theoretical guidelines for merging vs. ensembling studies.
Method constructs finance LLMs without instruction data using pretraining and model merging.
problem Developing domain-specific LLMs for finance is resource-intensive.
method Continual pretraining on financial data + model merging of instruction-tuned and domain-specific pretrained vectors.
result Successfully constructs instruction-tuned LLMs for finance without additional instruction data.
Deep learning algorithms for connectomics rely upon localized classification, rather than overall morphology. This leads to a high incidence of erroneously merged objects. Humans, by contrast, can easily detect such errors by acquiring intuition for the correct morphology of objects. Biological neurons have complicated…
Single global merging boosts decentralized learning performance.
problem Limited communication in decentralized learning hinders performance.
method Scheduled communication, focusing on final step with global merging.
result Single global merging improves global test performance.
Gradient boosted decision trees (GBDT) is the leading algorithm for many commercial and academic data applications. We give a deep analysis of this algorithm, especially the histogram technique, which is a basis for the regulized distribution with compact support. We present three new modifications. 1) Share memory tec…
DPSM clusters nodes in data and graph spaces via density propagation and subcluster merging.
problem Automatic clustering of nodes in data and graph spaces.
method Density-based node clustering with propagation process and spectral clustering on subclusters.
result DPSM effectively clusters nodes in both data and graph spaces.
Bayesian Federated Inference improves survival model analysis without merging data.
problem Accurately estimating survival model parameters requires sufficient data and events, which is often lacking in practice.
method Bayesian Federated Inference (BFI) for survival models, where local centers perform analyses and combine results.
result Results from BFI are similar to those from merged data analyses, demonstrating excellent performance.
In order to drive safely and efficiently under merging scenarios, autonomous vehicles should be aware of their surroundings and make decisions by interacting with other road participants. Moreover, different strategies should be made when the autonomous vehicle is interacting with drivers having different level of coop…
New methods merge discrete gradient fields from patches to correct errors.
problem Correctly merging partially defined discrete gradient fields from patches.
method Developed general and lean merging procedures for specific covering patterns.
result Corrected errors in merging discrete gradient fields from patches.
The hierarchical Dirichlet process (HDP) has become an important Bayesian nonparametric model for grouped data, such as document collections. The HDP is used to construct a flexible mixed-membership model where the number of components is determined by the data. As for most Bayesian nonparametric models, exact posterio…
The article improves the display of acceptable exchange ratios for merging companies.
problem Determining feasible exchange ratios for merging companies.
method Exploits a diagrammatic approach to display the bargaining region.
result Shares face upper and lower bounds for acceptable exchange ratios.
NetFuse merges different DNN models with varying weights for faster inference.
problem Inference speed of DNN models with different weights cannot be improved using existing techniques.
method NetFuse merges models with the same architecture but different weights and inputs, replacing operations with more general ones.
result NetFuse can speed up DNN inference time up to 3.6x on a NVIDIA V100 GPU.
The MAXENT principle helps merge datasets to infer causal effects.
problem Inferring causal effects from unobserved variables.
method Using the maximum entropy principle with causal sufficiency and faithfulness assumptions.
result Identifies causal edges among variables from merged datasets.
A critical decision point when training predictors using multiple studies is whether studies should be combined or treated separately. We compare two multi-study prediction approaches in the presence of potential heterogeneity in predictor-outcome relationships across datasets: 1) merging all of the datasets and traini…
Kernel testing compares cell states in single-cell data.
problem Comparing non-linear cell states in single-cell data.
method Kernel-based testing framework for non-linear distribution comparison.
result Identifies subtle population variations in cell states.
Split-Merge MCMC (Monte Carlo Markov Chain) is one of the essential and popular variants of MCMC for problems when an MCMC state consists of an unknown number of components. It is well known that state-of-the-art methods for split-merge MCMC do not scale well. Strategies for rapid mixing requires smart and informative …
Finding the optimal k-means clustering is NP-hard in general and many heuristics have been designed for minimizing monotonically the k-means objective. We first show how to extend Lloyd's batched relocation heuristic and Hartigan's single-point relocation heuristic to take into account empty-cluster and single-poin…
Cell detection and cell type classification from biomedical images play an important role for high-throughput imaging and various clinical application. While classification of single cell sample can be performed with standard computer vision and machine learning methods, analysis of multi-label samples (region containi…
Forest Fire Clustering discovers cell types from single-cell data.
problem Discovering cell types from large-scale single-cell sequencing data.
method Iterative label propagation and parallelized Monte Carlo simulation.
result Forest Fire Clustering outperforms state-of-the-art methods on diverse benchmarks.
Proposes a new method for two-dimensional data discretization.
problem Discretization of multi-dimensional data, especially when dimensions are dependent.
method PALM algorithm, which alternately partitions and merges regions using the MDL principle.
result PALM accurately reveals ground truth partitions and approximates well outside the model class.
Merging datasets is a key operation for data analytics. A frequent requirement for merging is joining across columns that have different surface forms for the same entity (e.g., the name of a person might be represented as "Douglas Adams" or "Adams, Douglas"). Similarly, ontology alignment can require recognizing disti…
Proposes CCCVAE for better single-cell clustering with cell-cell communication.
problem Improving single-cell RNA sequencing clustering by incorporating cell-cell communication.
method Integrates cell-cell communication into a variational autoencoder framework.
result Empirical results show CCCVAE outperforms standard VAEs in clustering performance.
Matching cells over time has long been the most difficult step in cell tracking. In this paper, we approach this problem by recasting it as a classification problem. We construct a feature set for each cell, and compute a feature difference vector between a cell in the current frame and a cell in a previous frame. Then…
Improved GPLVM model for single-cell RNA-seq data.
problem Lack of effective scalable models for clustering cell types in large-scale single-cell RNA-seq data.
method Introduces amortized stochastic variational Bayesian GPLVM (BGPLVM) tailored for single-cell RNA-seq.
result Matches the performance of scVI on synthetic and real-world datasets and reveals more interpretable latent structures.
The study identifies all possible vector field structures on specific 2D shapes.
problem Optimal discrete gradient vector fields on surfaces with 1-2 critical cells.
method Analysis of discrete vector fields on 2D shapes with minimal critical cells.
result All possible structures of discrete Morse functions on specified shapes.
New model identifies cell-specific genes for cancer prognosis.
problem No statistical model to integrate multiscale cancer data.
method Bayesian generalized promotion time cure models (GPTCMs).
result Improves cancer prognosis by identifying cell-specific genes.
MarkerMap selects key genes for cell type analysis in single-cell RNA-seq.
problem Selecting informative genes from large single-cell RNA-seq datasets is challenging and computationally intensive.
method MarkerMap is a generative model that identifies minimal gene sets explaining cell type variability.
result MarkerMap outperforms existing methods in both supervised and unsupervised marker selection.
Proposes CXNs for neural network computations on cell complexes.
problem Performing neural network computations on complex topological spaces.
method Introduces a message passing scheme and a unified encoder-decoder framework for cell complexes.
result Generalizes message passing to cell complexes and provides a cell2vec representation.