New learning algorithm mimics biological neural networks.
problem Biologically implausible backpropagation for directed neural networks.
method Introduces new neuronal dynamics and learning rule for arbitrary architectures, sparsity-inducing pruning method, and dynamical-systems characterization.
result Prunes irrelevant connections and improves learning efficiency.
New learning rules for wide neural networks without backpropagation.
problem Training wide neural networks efficiently and without backpropagation.
method Input-weight alignment driven by gradient descent in the NTK regime.
result Biologically-motivated learning rules equivalent to backpropagation in wide networks.
DCNs mimic neuronal networks for improved neural classification.
problem Lack of topological similarity between DNNs and biological neural networks.
method Developed DCNs with topologies inspired by real-world neuronal networks.
result High classification accuracy achieved by DCNs.
Biological neural network mimics CCA for multi-channel data.
problem Implementing CCA in a biologically plausible neural network.
method Derive an online CCA algorithm with local synaptic updates for multi-compartmental neurons.
result The derived neural network architecture and synaptic updates resemble cortical pyramidal neuron behavior.
Fault-tolerant neural networks inspired by biological error correction codes.
problem Achieving reliable computation with unreliable neurons.
method Using biological error correction codes from grid cells in the mammalian cortex to develop a fault-tolerant neural network.
result Noisy biological neurons operate below a fault-tolerance threshold, suggesting a mechanism for reliable computation in the brain.
Oja's rule improves neural network training without engineered tricks.
problem Training deep neural networks with biological constraints.
method Incorporating Oja's plasticity rule into error-driven training.
result Stable, efficient learning in feedforward and recurrent architectures.
Derives a biologically plausible neural network for Slow Feature Analysis.
problem Learning latent features from time series data.
method Starting from an SFA objective, derives Bio-SFA with a biologically plausible neural network implementation.
result Validates Bio-SFA on naturalistic stimuli, reproducing interesting properties of brain cells.
In this work, we perform an exploratory study on synthesizing deep neural networks using biological synaptic strength distributions, and the potential influence of different distributions on modelling performance particularly for the scenario associated with small data sets. Surprisingly, a CNN with convolutional layer…
DeepSIBA predicts biological effects of chemical structures using graph neural networks.
problem Predicting biological effects of chemical structures for drug discovery.
method Siamese Graph Convolutional Neural Networks for structure-biological effect mapping.
result Highly accurate predictions of biological effects for structurally dissimilar compounds.
Stochastic RNNs classify biological neural network paths with robust error bounds.
problem Classifying biological neural network paths.
method Modelled as a continuous-time stochastic recurrent neural network (RNN) with identity activation function, analysed in the robust regime.
result Generalisation error bound holds with high probability, showing the empirical risk minimiser is the best-in-class hypothesis.
Deep neural networks (DNNs) transform stimuli across multiple processing stages to produce representations that can be used to solve complex tasks, such as object recognition in images. However, a full understanding of how they achieve this remains elusive. The complexity of biological neural networks substantially exc…
We introduce bio-inspired artificial neural networks consisting of neurons that are additionally characterized by spatial positions. To simulate properties of biological systems we add the costs penalizing long connections and the proximity of neurons in a two-dimensional space. Our experiments show that in the case wh…
Sparse neural networks visualize paired transcriptomic and electrophysiological data.
problem Efficiently analyzing and visualizing paired multivariate neuroscientific data.
method Sparse deep neural networks with a two-dimensional bottleneck and group lasso penalty.
result Biologically interpretable two-dimensional visualizations of paired data.
GAIT-prop derives a biologically plausible learning rule from backpropagation.
problem Biological implausibility in traditional backpropagation for neural networks.
method GAIT-prop uses a top-down model to convert output error into plausible targets for weight updates.
result GAIT-prop and backpropagation give identical weight updates under certain conditions.
Graph auto-encoder predicts unobserved node features from biological networks and omics data.
problem Integrating biological networks and continuous node features for better prediction.
method Graph neural networks and feature auto-encoders trained on feature reconstruction.
result Graph feature auto-encoder outperforms auto-encoders trained on graph reconstruction for predicting unobserved node features.
This paper explores adaptive neural activation in RNNs for better learning.
problem Fixed neural activation functions limit the performance and adaptability of RNNs.
method Developed a novel parametric family of nonlinear activation functions inspired by biological neurons.
result Adaptive neural activation improves learning speed and performance in RNNs.
New algorithm shows neural networks can learn without full backpropagation.
problem Stochastic gradient descent with backpropagation is non-biologically plausible.
method Random and fixed backpropagation weights in a feedback alignment algorithm.
result Error converges to zero exponentially fast in overparameterized networks.
Backpropagation is explained as a diffusion process in neural networks.
problem The biological plausibility of Backpropagation is questioned.
method Demonstrated that time-delayed neurons and forward-backward waves approximate the gradient in deep networks.
result Backpropagation can be interpreted as a diffusion process, approximating the gradient for non-fast inputs.
The power law has been observed in the degree distributions of many biological neural networks. Sparse deep neural networks, which learn an economical representation from the data, resemble biological neural networks in many ways. In this paper, we study if these artificial networks also exhibit properties of the power…
Proposes a new neural network approach to credit assignment.
problem Credit assignment problem in deep neural networks.
method Contrastive similarity matching objective function.
result Deep networks learn to match similarity between layers.
New algorithm for online training of Spiking Neural Networks (SNNs).
problem Training Spiking Neural Networks (SNNs) online with BPTT-equivalent gradients.
method Clear separation of spatial and temporal gradient components, derived from biological insights.
result Online training of SNNs with BPTT-equivalent gradients and low time complexity.
Spiking neural networks perform similarly to deep networks on occluded images.
problem Robust object recognition in partially occluded images.
method Developed a two-layer spiking neural network trained on natural scenes with a biologically plausible learning rule, compared to deep convolutional networks.
result Spiking neural networks achieve good accuracy and robustness on stepwise pixel erasement tasks.
Deep learning applied to biological data mining.
problem Mining complex biological data from diverse sources.
method Artificial neural networks, deep learning architectures.
result Deep learning techniques improve pattern recognition in biological data.
Abstract: Investigates the role of activation functions in neural networks and their physical basis.
problem Understanding the role of activation functions in neural networks and their physical basis.
method Formalizes the use of activation functions in neural inference by relating them to phase transitions in statistical physics.
result Reveals the physical justification for the performance of typical activation functions in neural networks.
Neural network models of early sensory processing typically reduce the dimensionality of streaming input data. Such networks learn the principal subspace, in the sense of principal component analysis (PCA), by adjusting synaptic weights according to activity-dependent learning rules. When derived from a principled cost…
DASH simplifies neural networks for gene regulatory dynamics using domain knowledge.
problem Pruning neural networks for gene regulatory dynamics lacks biologically meaningful structure learning.
method DASH uses domain-specific structural information to guide network pruning, leading to sparser, better interpretable models.
result DASH outperforms general pruning methods in gene regulatory network inference, yielding deeper insights.
Defines metrics to compare neural network representations.
problem Comparing neural network representations across different architectures and tasks.
method Developed a family of metric spaces and modified existing measures to quantify representational dissimilarity.
result Identified relationships between neural representations and anatomical features.
engGNN combines external and generated graphs to improve disease classification and biomarker discovery.
problem Challenges in integrating omics data due to high dimensionality and small sample sizes.
method Dual-graph framework that integrates external biological networks with data-driven generated graphs.
result engGNN outperforms state-of-the-art methods in disease classification and biomarker discovery.
A new neural model evolves to learn at the synaptic level.
problem Lack of biologically realistic neural models in deep learning.
method Evolve individual neuron and synaptic models using ENUs.
result Evolved neural network learns complex tasks like a T-maze.
New learning rules from information bottleneck improve deep learning without precise labels.
problem Training deep neural networks with backpropagation is biologically implausible.
method Kernelized information bottleneck principle with 3-factor Hebbian structure.
result The new learning rules perform nearly as well as backpropagation on image classification tasks.
Log-Normal Multiplicative Dynamics improves low-precision training of neural networks.
problem Training large neural networks with low precision is unstable.
method Derive a Bayesian learning rule with log-normal posterior distributions and multiplicative updates.
result LMD achieves stable and accurate training for Vision Transformer and GPT-2.
Deep neural networks correct Mie scattering in FTIR spectra of biological samples.
problem Mie scattering obscures biochemically relevant spectral information in FTIR spectra of biological samples.
method Deep neural networks to approximate the preprocessing function that removes Mie scattering.
result The model is faster and more generalizable across different tissue types.
Substring kernels are classical tools for representing biological sequences or text. However, when large amounts of annotated data are available, models that allow end-to-end training such as neural networks are often preferred. Links between recurrent neural networks (RNNs) and substring kernels have recently been dra…
Two local learning rules are investigated to avoid weight transport in neural networks.
problem Local learning rules that avoid weight transport are unstable and require tuning.
method Investigated two non-local learning rules and a more robust local rule.
result Non-local learning rules match state-of-the-art performance and operate effectively in noisy updates.
New mechanisms from primate vision improve neural network robustness.
problem Demonstrating robust neural networks to small adversarial perturbations.
method Investigated two biologically plausible mechanisms: non-uniform retina sampling and receptive field diversity.
result Non-uniform retina sampling and receptive field diversity improve adversarial robustness.
Deep neural networks (DNNs) are known for extracting useful information from large amounts of data. However, the representations learned in DNNs are typically hard to interpret, especially in dense layers. One crucial issue of the classical DNN model such as multilayer perceptron (MLP) is that neurons in the same layer…
This paper presents a constructive algorithm that achieves successful one-shot learning of hidden spike-patterns in a competitive detection task. It has previously been shown (Masquelier et al., 2008) that spike-timing-dependent plasticity (STDP) and lateral inhibition can result in neurons competitively tuned to repea…
While deep learning has led to remarkable advances across diverse applications, it struggles in domains where the data distribution changes over the course of learning. In stark contrast, biological neural networks continually adapt to changing domains, possibly by leveraging complex molecular machinery to solve many t…
This project proposes using reinforcement learning to train spiking neural networks.
problem Training spiking neural networks using traditional methods is challenging due to the discrete nature of spikes.
method The project investigates two approaches: 1) treating each neuron as an RL agent, 2) applying the reparameterization trick.
result The project demonstrates that reinforcement learning can be applied to train spiking neural networks.
A new model for sequential memory using temporal predictive coding.
problem Forming accurate memory of sequential stimuli in the brain.
method Proposes a novel PC-based model called temporal predictive coding (tPC).
result Shows that tPC models can accurately memorize and retrieve sequential inputs.
FsNet selects features for high-dimensional biological data efficiently.
problem Efficient feature selection for high-dimensional biological data.
method FsNet combines selection and reconstruction layers with tiny networks for weight prediction.
result FsNet outperforms standard DNNs on high-dimensional biological datasets.
AR algorithm simplifies backpropagation with improved scalability and biological plausibility.
problem Improving backpropagation algorithms for complex neural networks and biological plausibility.
method Introducing learnable backwards weights and avoiding nonlinear derivative computations; relaxing frozen feedforward pass assumption.
result Simplified AR algorithm maintains performance on complex CNN architectures and challenging datasets.
While neural networks are powerful approximators used to classify or embed data into lower dimensional spaces, they are often regarded as black boxes with uninterpretable features. Here we propose Graph Spectral Regularization for making hidden layers more interpretable without significantly impacting performance on th…
Study adapts AI research methods to analyze image augmentation impacts on neural network operations.
problem Understanding how image augmentation affects neural network performance and sensitivity.
method Adapted treatment-control paradigm, uses variance decomposition, Sobol indices, and Shapley values for sensitivity analysis.
result Visualizes and quantifies sensitivity to different image augmentation parameters.
Training deep neural networks with the error backpropagation algorithm is considered implausible from a biological perspective. Numerous recent publications suggest elaborate models for biologically plausible variants of deep learning, typically defining success as reaching around 98% test accuracy on the MNIST data se…
The quest for biologically plausible deep learning is driven, not just by the desire to explain experimentally-observed properties of biological neural networks, but also by the hope of discovering more efficient methods for training artificial networks. In this paper, we propose a new algorithm named Variational Proba…
Gated recurrent units (GRUs) are specialized memory elements for building recurrent neural networks. Despite their incredible success on various tasks, including extracting dynamics underlying neural data, little is understood about the specific dynamics representable in a GRU network. As a result, it is both difficult…
Paper semantifies bioassay text using neural networks.
problem Semantifying unstructured bioassay text descriptions.
method Neural-network-based approach to automatically semantify bioassay text.
result Neural-based semantification significantly outperforms a frequency-based baseline (72% F1 vs 47% F1).