arXiv research

This paper reviews MDS, Sammon mapping, and Isomap, explaining their theory and applications.

Revisits Isomap, showing it constructs Euclidean representations of geodesic structure.

Proposes a faster Isomap algorithm by reducing eigenvalue decomposition complexity.

Manifold learning offers nonlinear dimensionality reduction of high-dimensional datasets. In this paper, we bring geometry processing to bear on manifold learning by introducing a new approach based on metric connection for generating a quasi-isometric, low-dimensional mapping from a sparse and irregular sampling of an…

Scientific and engineering processes deliver massive high-dimensional data sets that are generated as non-linear transformations of an initial state and few process parameters. Mapping such data to a low-dimensional manifold facilitates better understanding of the underlying processes, and enables their optimization. I…

Optimally estimate distances on surfaces using reconstructed meshes.

The problem of multiple surface clustering is a challenging task, particularly when the surfaces intersect. Available methods such as Isomap fail to capture the true shape of the surface nearby the intersection and result in incorrect clustering. The Isomap algorithm uses the shortest path between points. The main draw…

One of the common tasks in unsupervised learning is dimensionality reduction, where the goal is to find meaningful low-dimensional structures hidden in high-dimensional data. Sometimes referred to as manifold learning, this problem is closely related to the problem of localization, which aims at embedding a weighted gr…

New methods for visualizing multi-view data improve clustering accuracy.

New method uses manifold learning to infer latent positions of 1D submanifolds in random dot product graphs.

The paper shows how to recover true node positions from a graph or similarity matrix.

Spectral dimensionality reduction is frequently used to identify low-dimensional structure in high-dimensional data. However, learning manifolds, especially from the streaming data, is computationally and memory expensive. In this paper, we argue that a stable manifold can be learned using only a fraction of the stream…

Manifold learning based methods have been widely used for non-linear dimensionality reduction (NLDR). However, in many practical settings, the need to process streaming data is a challenge for such methods, owing to the high computational complexity involved. Moreover, most methods operate under the assumption that the…

New DR method uses Gromov-Wasserstein distance for high-dimensional data.

Geodesic distance is the shortest path between two points in a Riemannian manifold. Manifold learning algorithms, such as Isomap, seek to learn a manifold that preserves geodesic distances. However, such methods operate on the ambient dimensionality, and are therefore fragile to noise dimensions. We developed an unsupe…

Contagion maps detect network structure in noisy data.

Streaming adaptations of manifold learning based dimensionality reduction methods, such as Isomap, are based on the assumption that a small initial batch of observations is enough for exact learning of the manifold, while remaining streaming data instances can be cheaply mapped to this manifold. However, there are no t…

Recently manifold learning algorithm for dimensionality reduction attracts more and more interests, and various linear and nonlinear, global and local algorithms are proposed. The key step of manifold learning algorithm is the neighboring region selection. However, so far for the references we know, few of which propos…

We present the Procrustes measure, a novel measure based on Procrustes rotation that enables quantitative comparison of the output of manifold-based embedding algorithms (such as LLE (Roweis and Saul, 2000) and Isomap (Tenenbaum et al, 2000)). The measure also serves as a natural tool when choosing dimension-reduction …

In the machine learning field, dimensionality reduction is an important task. It mitigates the undesired properties of high-dimensional spaces to facilitate classification, compression, and visualization of high-dimensional data. During the last decade, researchers proposed many new (non-linear) techniques for dimensio…

IsUMap improves data visualization of complex geometries.

Suppose the data consist of a set $S$ of points $x_j, 1 \leq j \leq J$, distributed in a bounded domain $D \subset R^N$, where $N$ and $J$ are large numbers. In this paper an algorithm is proposed for checking whether there exists a manifold $\mathbb{M}$ of low dimension near which many of the points of $S$ lie and fin…

Two algorithms estimate Wasserstein distance matrices from few entries for manifold learning.

We introduce {\em vector diffusion maps} (VDM), a new mathematical framework for organizing and analyzing massive high dimensional data sets, images and shapes. VDM is a mathematical and algorithmic generalization of diffusion maps and other non-linear dimensionality reduction methods, such as LLE, ISOMAP and Laplacian…

Paper proposes a new method for supervised manifold learning using random forest proximities.

Visualizing high-dimensional data is an essential task in Data Science and Machine Learning. The Centroid-Encoder (CE) method is similar to the autoencoder but incorporates label information to keep objects of a class close together in the reduced visualization space. CE exploits nonlinearity and labels to encode high …

This paper proposes an out-of-sample extension framework for a global manifold learning algorithm (Isomap) that uses temporal information in out-of-sample points in order to make the embedding more robust to noise and artifacts. Given a set of noise-free training data and its embedding, the proposed framework extends t…

We introduce the concept of Hypoelliptic Diffusion Maps (HDM), a framework generalizing Diffusion Maps in the context of manifold learning and dimensionality reduction. Standard non-linear dimensionality reduction methods (e.g., LLE, ISOMAP, Laplacian Eigenmaps, Diffusion Maps) focus on mining massive data sets using w…

Adapts category theory to manifold learning for better understanding and stability.

Understanding why and how certain neural networks outperform others is key to guiding future development of network architectures and optimization methods. To this end, we introduce a novel visualization algorithm that reveals the internal geometry of such networks: Multislice PHATE (M-PHATE), the first method designed…

ProbDR framework interprets DR algorithms as probabilistic inference.

Graph regularized autoencoder improves anomaly detection performance.

Estimates intrinsic dimension of data sets robustly to noise.

For many machine learning tasks, the input data lie on a low-dimensional manifold embedded in a high dimensional space and, because of this high-dimensional structure, most algorithms are inefficient. The typical solution is to reduce the dimension of the input data using standard dimension reduction algorithms such as…

We consider the problem of recovering a $d-$dimensional manifold $\mathcal{M} \subset \mathbb{R}^n$ when provided with noiseless samples from $\mathcal{M}$. There are many algorithms (e.g., Isomap) that are used in practice to fit manifolds and thus reduce the dimensionality of a given data set. Ideally, the estimate $…

Wisdom of the crowd, the collective intelligence derived from responses of multiple human or machine individuals to the same questions, can be more accurate than each individual, and improve social decision-making and prediction accuracy. This can also integrate multiple programs or datasets, each as an individual, for…

Survey of Locally Linear Embedding and its variants.

A novel supervised visualization technique for data exploration.

In the era of big data, reducing data dimensionality is critical in many areas of science. Widely used Principal Component Analysis (PCA) addresses this problem by computing a low dimensional data embedding that maximally explain variance of the data. However, PCA has two major weaknesses. Firstly, it only considers li…

Survey of embedding methods for high-dimensional and network data.

We solve the vector embedding problem by minimizing total distortion under constraints.

Autoencoders help transform data representations for improved learning tasks.