Automated brain CT image retrieval from traumatic brain injury cohorts using deep neural networks.
problem Manual image retrieval of whole brain CT scans from large clinical cohorts is time-consuming and resource-intensive.
method Proposes a deep convolutional neural network (dMIR) for automated classification of 2D montage images.
result Achieved high accuracy (f1=1.0) for validation and testing data sets.
A GMM-based method generates new 3D structures from medical images.
problem Generating new medical images from limited data and different modalities.
method Gaussian Mixture Model (GMM) for point-cloud generation.
result Generated point-clouds closely match training samples from the same class.
A new NAS framework optimizes 3D medical image segmentation architectures.
problem Optimizing neural architectures for high-resolution 3D medical images.
method Stochastic sampling algorithm for scalable gradient-based optimization of neural connectivities and operation types in both encoder and decoder.
result Automatically designed architecture outperforms human-designed U-Net.
A new method increases 3D medical image segmentation accuracy and speed.
problem Training large 3D medical images on GPUs with limited memory.
method Data-swapping method to enlarge GPU memory and avoid patching.
result Improved segmentation accuracy and speed for full-size images.
A new rotation invariant method for 3D medical imaging classification.
problem Computational expense and lack of rotation invariance in 3D medical image processing.
method Proposes a rotation invariant convolution operator using hypersphere topology.
result Demonstrates improved classification accuracy and rotation invariance.
Machine vision-guided 3D medical image compression improves segmentation accuracy.
problem High data traffic and computation costs in cloud-based medical image analysis.
method Developed a machine vision-oriented 3D image compression framework for medical segmentation.
result Significantly higher segmentation accuracy at the same compression rate or better compression rate under the same accuracy.
System converts 3D lung nodule images into embeddings for retrieval.
problem Retrieving similar 3D lung nodule images for radiologist decision support.
method 3D deep learning, semantic representation, transfer learning, similarity score.
result System can measure similarity between nodule annotations and CBIR results.
3D GAN improves MRI image quality from low-res scans.
problem Improving MRI image quality from low-resolution scans.
method Adversarial learning using 3D convolutions and least squares loss.
result 3D GAN generates high-quality 3D MRI images from low-resolution scans.
Deep learning improves medical ultrasound image segmentation accuracy.
problem Improving accuracy in medical ultrasound image segmentation.
method Categorizes deep learning methods into six groups and analyzes current representative algorithms.
result Current methods show significant improvement in image segmentation accuracy.
3D ConvNets improved with Project & Excite for medical imaging segmentation.
problem Improving segmentation performance in 3D medical imaging.
method Proposed Project & Excite (PE) modules for 3D F-CNNs, extending 2D recalibration methods.
result Project & Excite modules boost segmentation performance up to 0.3 in Dice Score.
A novel 3D U-Net approach improves kidney tumor segmentation in medical imaging.
problem Challenging manual annotation and great medical impact of kidney tumor segmentation.
method End-to-end cascaded U-Nets with a localization network.
result Achieves Sørensen-Dice coefficients of 0.902 for kidney and 0.408 for tumor segmentation.
Novel unsupervised method for fast 3D image registration using cycle-consistent CNN.
problem Medical image registration for cancer diagnosis.
method Unsupervised deep learning using cycle-consistent CNN for deformable registration.
result Very precise 3D image registration within a few seconds, improving cancer size estimation.
Study evaluates using multiple slices as input for CNNs in medical image segmentation.
problem Improving segmentation performance in medical images with limited computational resources.
method Compared pseudo-3D and 2D approaches using different CNN architectures and datasets.
result Multi-slice inputs did not significantly improve segmentation performance over 2D or 3D CNNs.
Convolutional LSTM detects emphysema in lung cancer screening images.
problem Learning disease signatures from weakly annotated volumetric medical images.
method 3D volumetric images analyzed as a sequence of 2D images using convolutional LSTM.
result Convolutional LSTM model outperformed other methods in detecting emphysema.
Proposes a new method for medical image segmentation.
problem Medical image segmentation challenges.
method Decompose-and-Integrate Learning.
result Improves segmentation performance on multiple datasets.
One of the challenges of using machine learning techniques with medical data is the frequent dearth of source image data on which to train. A representative example is automated lung cancer diagnosis, where nodule images need to be classified as suspicious or benign. In this work we propose an automatic synthetic lung …
TorchIO simplifies medical image processing for deep learning.
problem Challenges in processing medical images like MRI and CT.
method Efficient loading, preprocessing, augmentation, and patch-based sampling.
result Enables researchers to focus on deep learning experiments.
Paper extends 2D ZSAD to 3D MRI without training, achieving robust anomaly detection.
problem Challenges in extending zero-shot anomaly detection to 3D medical images.
method Constructs localized volumetric tokens by aggregating 2D slices processed by 2D foundation models.
result Training-free, batch-based ZSAD effectively extends from 2D encoders to full 3D MRI volumes.
3D dataset for intracranial aneurysms aids deep learning applications.
problem Lack of 3D medical datasets for deep learning.
method Developed an open-access 3D dataset, IntrA, for intracranial aneurysms.
result Demonstrated the challenges and performance of 3D medical datasets.
New benchmark for non-rigid 3D human shape retrieval.
problem Distinguishing between body shapes of 3D human models.
method Extended benchmark with 145 new models and FAUST dataset.
result Improved comparison of 25 shape retrieval methods.
What has happened in machine learning lately, and what does it mean for the future of medical image analysis? Machine learning has witnessed a tremendous amount of attention over the last few years. The current boom started around 2009 when so-called deep artificial neural networks began outperforming other established…
Improved 3D MRI classification using contrastive learning with continuous proxy metadata.
problem Insufficient labelled data for 3D medical image classification.
method Proposed a new loss function (y-Aware InfoNCE) to leverage continuous proxy metadata in contrastive learning.
result 3D CNN model pre-trained on 10^4 multi-site healthy brain MRI scans outperforms fully-supervised methods.
Deep learning improves automatic image segmentation.
problem Automatic object localization and boundary delineation in images and medical scans.
method Proposed and evaluated novel dilated dense encoder-decoder architectures for salient object segmentation and lesion localization in medical images.
result Proposed architectures outperform state-of-the-art models in accuracy and efficiency.
CycleMorph improves image registration by preserving topology with cycle consistency.
problem Preserving original topology during deformation in image registration.
method Cycle-consistent deformable image registration approach.
result Effective and accurate registration on diverse image pairs within seconds.
Improves tensor networks for classifying medical images.
problem Classifying 2D and 3D medical images efficiently.
method Develops LoTeNet, a tensor network that treats small image regions as orderless and aggregates local representations hierarchically.
result LoTeNet achieves comparable or superior performance to other methods with less computational resources.
Neural network Kalman filtering improves 3D ultrasound object tracking.
problem Accurate and robust 3D positional estimation from 2D ultrasound data.
method Neural network training for out-of-plane offset estimation, combined with Kalman filtering.
result Mean error of 0.1mm for simulated data, 0.2mm for experimental data.
ACNN improves medical image segmentation with full resolution and higher IoUs.
problem Reduced spatial resolution in current DCNNs hinders medical image segmentation.
method Proposes ACNN using atrous convolution, cascaded atrous II-blocks, residual learning, and Instance Normalization.
result ACNN achieves higher IoUs than U-Net and Deeplabv3+ with fewer parameters.
3D CNNs interpret brain MRI differences between men and women.
problem Interpreting 3D CNNs for voxel-wise brain MRI analysis.
method Three interpretation methods: Meaningful Perturbations, Grad CAM, and Guided Backpropagation.
result Voxel-wise 3D CNN interpretation of brain MRI data.
We consider the problem of learning a measure of distance among vectors in a feature space and propose a hybrid method that simultaneously learns from similarity ratings assigned to pairs of vectors and class labels assigned to individual vectors. Our method is based on a generative model in which class labels can prov…
A network removes irrelevant structures from chest radiographs for better analysis.
problem Clutter in chest radiographs hinders visual inspection and analysis.
method Fully Convolutional Network to suppress undesired visual structure.
result Improved classifier performance with limited training data.
Paper introduces conformal prediction for reliable uncertainty quantification in landmark localization.
problem Systematic underestimation of total predictive uncertainty in landmark localization.
method Conformal prediction framework for multi-output regression, generating flexible prediction regions.
result Methods outperform existing approaches in validity and efficiency across 2D and 3D datasets.
Paper reduces false positives in lung nodule detection using deep learning on point clouds.
problem Reduces false positives in lung nodule detection.
method Uses deep learning models for point clouds to transform 3D CT scan data.
result Achieved 85.98 FROC compared to 77.26 FROC for baseline models.
Deep generative architectures provide a way to model not only images but also complex, 3-dimensional objects, such as point clouds. In this work, we present a novel method to obtain meaningful representations of 3D shapes that can be used for challenging tasks including 3D points generation, reconstruction, compression…
Study uses stacked hourglass networks to improve facial landmark detection for medical diagnosis.
problem Improving accuracy of facial landmark detection for medical diagnosis.
method Conducted a study on landmark localisation methods using stacked hourglass networks.
result State-of-the-art stacked hourglass architecture outperforms traditional methods.
Method synthesizes 4D CMR images from XCAT model using GAN and SPADE.
problem Synthesizing realistic 4D CMR images with annotations and adaptable styles.
method Hybrid GAN approach with XCAT anatomical ground truth and SPADE for semantic preservation.
result Synthesized images with modality-specific features learned from real CMR data.
Contrastive learning recovers latent distributions for ambiguous inputs, including aleatoric uncertainty.
problem Real-world observations often have inherent ambiguities, making the true posterior probabilistic with heteroscedastic uncertainty.
method Extended InfoNCE objective and encoders to predict latent distributions, proving they recover the correct posteriors, including aleatoric uncertainty.
result Contrastive learning encoders can recover the correct posteriors of data-generating processes, including aleatoric uncertainty, up to a rotation of the latent space.
The majority of medical documents and electronic health records (EHRs) are in text format that poses a challenge for data processing and finding relevant documents. Looking for ways to automatically retrieve the enormous amount of health and medical knowledge has always been an intriguing topic. Powerful methods have b…
The success of various applications including robotics, digital content creation, and visualization demand a structured and abstract representation of the 3D world from limited sensor data. Inspired by the nature of human perception of 3D shapes as a collection of simple parts, we explore such an abstract shape represe…
Topology-based information retrieval improves query accuracy.
problem Query accuracy in databases with complex structures.
method Dilation-invariant comparative measures of persistent homology.
result Topology-based retrieval outperforms standard methods.
The analysis of mixed data has been raising challenges in statistics and machine learning. One of two most prominent challenges is to develop new statistical techniques and methodologies to effectively handle mixed data by making the data less heterogeneous with minimum loss of information. The other challenge is that …
A new neural network approach for medical image reconstruction.
problem Ill-posed large-scale inverse problems in medical imaging.
method Decoupling regularization from data consistency using neural network priors.
result The method outperforms existing techniques in various quantitative measures.
For homeland and transportation security applications, 2D X-ray explosive detection system (EDS) have been widely used, but they have limitations in recognizing 3D shape of the hidden objects. Among various types of 3D computed tomography (CT) systems to address this issue, this paper is interested in a stationary CT u…
This paper improves image retrieval accuracy through novel relevance feedback methods.
problem Improving image retrieval accuracy in Content-Based Image Retrieval (CBIR).
method Novel addition to feature re-weighting and classification techniques, focusing on 0-th iteration improvement.
result Significantly improved retrieval accuracy from relevance feedback.
Dissertation tackles zero-shot anomaly detection, focusing on consistent anomalies and proposing CoDeGraph framework.
problem Consistent anomalies bias distance-based zero-shot anomaly detection methods.
method Formalized consistent anomalies, identified similarity scaling and neighbor-burnout phenomena, introduced CoDeGraph framework.
result CoDeGraph effectively suppresses consistent anomalies in zero-shot anomaly detection.
Most content-based image retrieval systems consider either one single query, or multiple queries that include the same object or represent the same semantic information. In this paper we consider the content-based image retrieval problem for multiple query images corresponding to different image semantics. We propose a…
Generative model improves zero-shot sketch-based image retrieval.
problem Existing SBIR methods struggle with novel classes.
method Generative model learns to generate images conditioned on novel sketches.
result Significantly outperforms baselines on two challenging datasets.
Study improves image-caption retrieval by quantifying feature and posterior uncertainty.
problem Improving reliability in image-caption retrieval tasks with deep learning models.
method Quantified feature and posterior uncertainty for model averaging and reliability measure in image-caption retrieval.
result Consistent improvement in retrieval performance with different datasets and architectures.
Combines deep learning and iterative methods for robust phase retrieval.
problem Recovering signals from noisy Fourier intensities.
method Regularization-by-denoising combining iterative phase retrieval and deep learning.
result Outperforms other noise-robust phase retrieval algorithms.