t-SNE loses important features in data visualization.
problem t-SNE's loss of important features in data visualization.
method Established mathematical framework to understand t-SNE's loss in different scenarios.
result t-SNE loses important features of data in various scenarios.
Optimizes t-SNE for high-dimensional data with random projections.
problem High computational cost of t-SNE for high-dimensional data.
method Use random projections to reduce high-dimensional data to a few dimensions, then apply t-SNE.
result Random projections preserve clustering while significantly reducing t-SNE runtime.
t-SNE algorithm's points remain bounded under gradient flow.
problem Understanding the boundedness of t-SNE points.
method Gradient flow of t-SNE with KL divergence, examining weak convergence assumptions.
result Points generated by t-SNE remain bounded under gradient flow.
Theoretical analysis of t-SNE for visualizing clustered data.
problem Understanding t-SNE for visualizing high-dimensional clustered data.
method Gradient descent approach and power iterations based on graph Laplacian.
result Asymptotic equivalence and limiting behavior of t-SNE's early exaggeration stage.
t-SNE fails to reveal clusters even in well-clusterable data.
problem t-SNE's failure to show clusters in well-clusterable data.
method Empirical evidence and theoretical analysis of t-SNE's limitations.
result t-SNE may hide clustering patterns even with strong signals in the data.
Interactive tool for better understanding t-SNE projections.
problem Interpreting t-SNE projections can be challenging and misleading.
method Interactive visualization tool with different views.
result Improves understanding of t-SNE and its results.
t-distributed Stochastic Neighborhood Embedding (t-SNE) is a method for dimensionality reduction and visualization that has become widely popular in recent years. Efficient implementations of t-SNE are available, but they scale poorly to datasets with hundreds of thousands to millions of high dimensional data-points. W…
Paper studies t-SNE convergence with generalized kernels.
problem Understanding convergence of t-SNE with generalized kernels.
method Concrete formulation of generalized kernels, proving convergence to an equilibrium distribution.
result t-SNE converges to an equilibrium distribution under certain conditions for generalized kernels.
Dimensionality reduction and manifold learning methods such as t-Distributed Stochastic Neighbor Embedding (t-SNE) are routinely used to map high-dimensional data into a 2-dimensional space to visualize and explore the data. However, two dimensions are typically insufficient to capture all structure in the data, the sa…
Proposes a parametric t-SNE without perplexity tuning.
problem Non-parametric t-SNE's perplexity parameter limits DR quality.
method Multi-scale parametric t-SNE with deep neural network.
result Produces reliable embeddings with competitive neighborhood preservation.
This paper presents a new insight into improving the performance of Stochastic Neighbour Embedding (t-SNE) by using Isolation kernel instead of Gaussian kernel. Isolation kernel outperforms Gaussian kernel in two aspects. First, the use of Isolation kernel in t-SNE overcomes the drawback of misrepresenting some structu…
t-Distributed Stochastic Neighbor Embedding (t-SNE) is one of the most widely used dimensionality reduction methods for data visualization, but it has a perplexity hyperparameter that requires manual selection. In practice, proper tuning of t-SNE perplexity requires users to understand the inner working of the method a…
Modern datasets and models are notoriously difficult to explore and analyze due to their inherent high dimensionality and massive numbers of samples. Existing visualization methods which employ dimensionality reduction to two or three dimensions are often inefficient and/or ineffective for these datasets. This paper in…
ARS visualization improves t-SNE dynamics with tunable attraction and repulsion.
problem Improve data visualization techniques for complex data sets.
method ARS framework based on t-SNE dynamics with normalized interactions and tunable kernels.
result ARS visualization provides better control over cluster tightness and spacing.
Tree-SNE combines t-SNE and hierarchical clustering for data visualization.
problem Data visualization and clustering in complex datasets.
method Stacked one-dimensional t-SNE embeddings and alpha-clustering.
result Effective hierarchical clustering and visualization of various datasets.
T-distributed stochastic neighbour embedding (t-SNE) is a widely used data visualisation technique. It differs from its predecessor SNE by the low-dimensional similarity kernel: the Gaussian kernel was replaced by the heavy-tailed Cauchy kernel, solving the "crowding problem" of SNE. Here, we develop an efficient imple…
Explains SNE, t-SNE, and their variants for manifold learning.
problem Dimensionality reduction and manifold learning.
method Probabilistic approach using Gaussian and Student-t distributions.
result Out-of-sample extension and acceleration methods for t-SNE.
This paper finds a linear relationship between t-SNE perplexity and data set size.
problem Choosing the right perplexity for t-SNE embeddings.
method Analyzed the relationship between perplexity and data set size.
result Embeddings remain structurally consistent when perplexity is adjusted accordingly.
Revised ct-SNE improves t-SNE for visualizing data beyond labels.
problem ct-SNE fails in realistic settings where data is well clustered over labels.
method Conditioning high-dimensional similarities, storing nearest neighbors separately, and using speedups.
result Improved embedding quality and scalability.
Parametric t-SNE improves generalization for streaming data.
problem Training neural networks for t-SNE objective function fails due to gradient exploding.
method Applied gradient clipping to solve gradient exploding problem.
result Parametric t-SNE achieves quality compatible with non-parametric t-SNE while generalizing to new data.
A new method, tree-SNE, solves the scale problem in t-SNE.
problem Clustering and visualizing high-dimensional data, especially MNIST digits.
method Revisits t-SNE idea to create a 2+1 dimensional embedding with a scale parameter.
result The optimal embedding depends continuously on the scale parameter for all initial conditions.
Paper interprets UMAP and t-SNE as probabilistic MAP inference.
problem Understanding and interpreting UMAP and t-SNE.
method Interprets UMAP and t-SNE as MAP inference methods corresponding to a probabilistic model of the graph Laplacian.
result Shows UMAP and t-SNE can be understood as probabilistic inference methods.
We introduce a nonlinear method for directly embedding large, sparse, stochastic graphs into low-dimensional spaces, without requiring vertex features to reside in, or be transformed into, a metric space. Graph data and models are prevalent in real-world applications. Direct graph embedding is fundamental to many graph…
Wasserstein t-SNE embeds hierarchical datasets considering within-unit distributions.
problem Exploring hierarchical datasets where units are compared based on means of sample distributions.
method Uses Wasserstein distance metric for 2D embeddings of units, approximating Gaussian distributions for efficiency.
result Demonstrates effective embedding of hierarchical datasets, uncovering meaningful structure.
This work proves the continuum limit of t-SNE for data visualization.
problem Understanding the theoretical basis of t-SNE from a continuum limit perspective.
method Proving the Kullback-Leibler divergence consistency as no∞ for t-SNE. result The continuum variational problem involving non-convex gradient regularization and penalty on probability density function magnitude.
t-distributed Stochastic Neighborhood Embedding (t-SNE), a clustering and visualization method proposed by van der Maaten & Hinton in 2008, has rapidly become a standard tool in a number of natural sciences. Despite its overwhelming success, there is a distinct lack of mathematical foundations and the inner workings of…
This paper evaluates t-SNE and MDS for reducing dimensions in datasets and classifying them with KNN, ENN, and SVM.
problem Reducing dimensions in datasets for better classification performance.
method t-SNE and MDS applied to nine datasets, followed by KNN, ENN, and SVM classification.
result Performance comparison of t-SNE and MDS with KNN, ENN, and SVM.
Neighbor embeddings balance attraction and repulsion to visualize data.
problem Visualizing high-dimensional datasets with trade-offs between continuous and discrete structures.
method Neighbor embeddings combine attractive and repulsive forces to visualize data.
result Changing the exaggeration parameter in t-SNE yields a spectrum of embeddings with a trade-off between continuous and discrete structures.
New approach combines PCA and t-sne for better data analysis.
problem Multiscale complexity in high-dimensional data.
method Multiscale joint characterization using PCA and t-sne.
result Joint characterization detects signals not seen by PCA or t-sne alone.
Study characterizes cryospheric spectral feature space using joint PC+t-SNE approach.
problem Characterize cryospheric spectral feature space for remote sensing applications.
method Compare and contrast two approaches for identifying feature space basis vectors via dimensionality reduction (PCA and t-SNE).
result Joint characterization reveals distinct continua and clusters of ice reflectance properties.
This paper uses t-SNE to visualize multi-objective electric machine optimization at various operating points.
problem Visualization of multi-objective electric machine optimization at multiple operating points is challenging.
method Utilizes t-distributed stochastic neighbor embedding (t-SNE) to visualize high-dimensional data.
result t-SNE provides better visualizations of electric machine design candidates and their performance.
Mathematical analysis of SNE and t-SNE for dimension reduction.
problem Optimal mapping of high-dimensional data to low dimensions.
method Gradient flow of relative entropy to minimize the distance between points.
result The diameter of the evolving sets remains bounded for SNE but may blow up for t-SNE.
GTSNE improves data visualization for high-dimensional data.
problem Visualizing high-dimensional data points in a 2D map.
method GTSNE is a variation of t-SNE that captures both local and macro structures.
result GTSNE produces better visualizations of high-dimensional data compared to other methods.
Study uses DNA methylation data to predict suicidal and non-suicidal deaths.
problem Predicting suicidal and non-suicidal deaths from DNA methylation data.
method Support Vector Machines (SVM) with dimensionality reduction using PCA and t-SNE.
result t-SNE outperforms PCA in reducing data dimensionality.
A new approach clusters data first, then embeds each cluster, improving transparency.
problem Visualizing data with latent clusters while preserving global geometry.
method First cluster, then embed each cluster, aligning the clusters.
result The approach is competitive with existing methods and more transparent.
Auto insurers improve risk assessment using t-SNE.
problem Accurate risk estimation for auto insurance policyholders.
method Combining neural network with t-SNE for dimensionality reduction.
result Visual representation of risk as a 2D surface, revealing high vs low risk policyholders.
We present GraphTSNE, a novel visualization technique for graph-structured data based on t-SNE. The growing interest in graph-structured data increases the importance of gaining human insight into such datasets by means of visualization. Among the most popular visualization techniques, classical t-SNE is not suitable o…
The t-distributed Stochastic Neighbor Embedding (t-SNE) is a powerful and popular method for visualizing high-dimensional data. It minimizes the Kullback-Leibler (KL) divergence between the original and embedded data distributions. In this work, we propose extending this method to other f-divergences. We analytically a…
NCVis speeds up data visualization for large datasets.
problem Performance issues in t-SNE for large datasets.
method Noise contrastive estimation for scalable visualization.
result NCVis outperforms state-of-the-art techniques in speed and quality.
Taxicab correspondence analysis visualizes sparse text data sets.
problem Visualization of extremely sparse contingency tables.
method Robust variant of correspondence analysis for sparse data.
result Visualized an 8265-dimensional textual data set.
New machine learning method classifies companies effectively.
problem Classifying companies for financial analysis.
method Unsupervised machine learning with t-SNE and spectral clustering.
result Improved portfolio performance through better company classification.
Improved performance in shape identification tasks using elastic metrics in t-SNE and UMAP.
problem Improper metrics in dimensionality reduction techniques lead to poor performance in machine learning applications.
method Incorporating elastic metrics into t-SNE and UMAP for functional data.
result Improved F1 scores on shape identification tasks for three benchmark datasets.
S-multi-SNE combines t-SNE with labelling data for better multi-view data visualisation and classification.
problem Visualizing and classifying multi-view data with limited labels.
method S-multi-SNE extends multi-SNE by incorporating labelling data as an additional view for semi-supervised classification and visualization.
result Including labelling information significantly improves the projection of samples and classification performance.
We describe a new method called t-ETE for finding a low-dimensional embedding of a set of objects in Euclidean space. We formulate the embedding problem as a joint ranking problem over a set of triplets, where each triplet captures the relative similarities between three objects in the set. By exploiting recent advance…
With the rapid development of Internet finance, a large number of studies have shown that Internet financial platforms have different financial systemic risk characteristics when they are subject to macroeconomic shocks or fragile internal crisis. From the perspective of regional development of Internet finance, this p…
We introduce "TriMap"; a dimensionality reduction technique based on triplet constraints, which preserves the global structure of the data better than the other commonly used methods such as t-SNE, LargeVis, and UMAP. To quantify the global accuracy of the embedding, we introduce a score that roughly reflects the relat…
The paper presents an O(N log N)-implementation of t-SNE -- an embedding technique that is commonly used for the visualization of high-dimensional data in scatter plots and that normally runs in O(N^2). The new implementation uses vantage-point trees to compute sparse pairwise similarities between the input data object…
Proposes MR-SNE for multimodal data visualization.
problem Visualizing data from multiple domains with relations across them.
method Extends t-SNE to compute augmented relations and jointly embed them in a low-dimensional space.
result Demonstrates promising performance in visualizing Flickr and Animal with Attributes 2 datasets.