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A locally-built, LLM-digested index of recent arXiv papers in quant finance, geometry/topology, and statistical ML — keyword search served straight from SQLite on this machine.

168,742 papers · 148 categories

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126252377503 · May 202619922001200920172026
48 results for structural homology

Mathematical pipeline identifies structural homology of knotted proteins.

problem Quantification and classification of protein structures, especially knotted proteins, require noise-free and complete data.
method Developed a geometric framework using persistent homology to analyze protein structures.
result Persistent homology accurately represents structural homology of knotted proteins and identifies geometric features of protein entanglement.

We use Heegaard Floer homology to define an invariant of homology cobordism. This invariant is isomorphic to a summand of the reduced Heegaard Floer homology of a rational homology sphere equipped with a spin structure and is analogous to Stoffregen's connected Seiberg-Witten Floer homology. We use this invariant to st…

2018-02-06abs ↗pdf ↗

Homology theories for associative algebraic structures are well established and have been studied for a long time. More recently, homology theories for self-distributive algebraic structures motivated by knot theory, such as quandles and their relatives, have been developed and investigated. In this paper, we study ass…

2016-03-28abs ↗pdf ↗

Extending ideas of Hedden-Ni, we show that the module structure on Khovanov homology detects split links. We also prove an analogue for untwisted Heegaard Floer homology of the branched double cover. Technical results proved along the way include two interpretations of the module structure on untwisted Heegaard Floer h…

2019-10-09abs ↗pdf ↗

We define the reduced Khovanov homology of an open book (S,h), and we identify a distinguished "contact element" in this group which may be used to establish the tightness or non-fillability of contact structures compatible with (S,h). Our construction generalizes the relationship between the reduced Khovanov homology …

2008-08-18abs ↗pdf ↗

We describe a bordered version of totally twisted Khovanov homology. We first twist Roberts's type DD structure by adding a "vertical" type DD structure which generalizes the vertical map in twisted tangle homology. One of the distinct advantages of our type DD structure is that it is homotopy equivalent to a type $…

2014-03-04abs ↗pdf ↗

We show that there is a well-defined cap-product structure on the Fintushel-Stern spectral sequence. Hence we obtain the induced cap-product structure on the ${\BZ}_8$-graded instanton Floer homology. The cap-product structure provides an essentially new property of the instanton Floer homology, from a topological poin…

1997-10-20abs ↗pdf ↗

Study HOMFLY-PT homology structure for knots up to 11 crossings.

problem Understanding the structure of HOMFLY-PT homology for knots.
method Using Nakagane and Sano's knot data and the sl(2)\mathfrak{sl}(2) action, compute HOMFLY-PT SS-invariant and compare to sl(N)\mathfrak{sl}(N) invariants.
result Computed HOMFLY-PT SS-invariant for all knots in the dataset.

Inspired by bordered Floer homology, we describe a type A structure on a Khovanov homology for a tangle, which complements the type D structure in a previous paper. The type A structure is a differential module over a certain algebra. This can be paired with the type D structure to recover the Khovanov chain complex. T…

2013-04-01abs ↗pdf ↗

In this paper we demonstrate the existence of Sasakian-Einstein structures on certain 2-connected rational homology 7-spheres. These appear to be the first non-regular examples of Sasakian-Einstein metrics on simply connected rational homology spheres. We also briefly describe the rational homology 7-spheres that admit…

2001-08-16abs ↗pdf ↗

We study the structural properties of colored Kauffman homologies of knots. Quadruple-gradings play an essential role in revealing the differential structure of colored Kauffman homology. Using the differential structure, the Kauffman homologies carrying the symmetric tensor products of the vector representation for th…

2013-10-08abs ↗pdf ↗

Given a contact structure on a closed, oriented three-manifold YY, we describe an invariant which takes values in the three-manifold's Floer homology $\HFa$. This invariant vanishes for overtwisted contact structures and is non-zero for Stein fillable ones. The construction uses of Giroux's interpretation of contact s…

2002-10-08abs ↗pdf ↗

We introduce BV-algebra structures on the homology of the space of framed long knots in Rn\mathbb{R}^n in two ways. The first one is given in a similar fashion to Chas-Sullivan's string topology. The second one is defined on the Hochschild homology associated with a cyclic, multiplicative operad of graded modules. The …

2011-10-11abs ↗pdf ↗

We provide a characterization of two types of directed homology for fully-connected, feedforward neural network architectures. These exact characterizations of the directed homology structure of a neural network architecture are the first of their kind. We show that the directed flag homology of deep networks reduces t…

2019-10-16abs ↗pdf ↗

In previous work with Schoenfeld, we considered a string-type chain complex of curves on surfaces, with differential given by resolving crossings, and computed the homology of this complex for discs. In this paper we consider the corresponding "string homology" of annuli. We find this homology has a rich algebraic stru…

2014-10-08abs ↗pdf ↗

This work classifies Smale-Barden manifolds with Sasakian structures.

problem Deciding when Smale-Barden manifolds admit Sasakian structures.
method Classifying manifolds by their homology and Barden invariant, and providing methods to realize specific cases.
result Realized all manifolds with specified homology and Barden invariant, contributing to the existence of Sasakian structures on rational homology spheres.

We study a module structure on Khovanov homology, which we show is natural under the Ozsvath-Szabo spectral sequence to the Floer homology of the branched double cover. As an application, we show that this module structure detects trivial links. A key ingredient of our proof is that the H_1/Torsion module structure on …

2012-04-04abs ↗pdf ↗

We conjecture the existence of four independent gradings in the colored HOMFLY homology. We describe these gradings explicitly for the rectangular colored homology of torus knots and make qualitative predictions of various interesting structures and symmetries in the colored homology of general knots. We also give a si…

2013-04-11abs ↗pdf ↗

In two previous papers, the author showed how to decompose the Khovanov homology of a link L\mathcal{L} into the algebraic pairing of a type D structure and a type A structure (as defined in bordered Floer homology), whenever a diagram for L\mathcal{L} is decomposed into the union of two tangles. Since Khovanov homol…

2014-01-21abs ↗pdf ↗

We describe the first part of a gluing theory for the bigraded Khovanov homology with integer coefficients. This part associates a type D structure to a tangle properly embedded in a half-space and proves that the homotopy class of the type D structure is an invariant of the isotopy class of the tangle. The constructio…

2013-04-01abs ↗pdf ↗

This work forms a foundational study of factorization homology, or topological chiral homology, at the generality of stratified spaces with tangential structures. Examples of such factorization homology theories include intersection homology, compactly supported stratified mapping spaces, and Hochschild homology with c…

2014-09-02abs ↗pdf ↗

By recent results of Baker--Etnyre--Van Horn-Morris, a rational open book decomposition defines a compatible contact structure. We show that the Heegaard Floer contact invariant of such a contact structure can be computed in terms of the knot Floer homology of its (rationally null-homologous) binding. We then use this …

2011-05-04abs ↗pdf ↗