Developing electrophysiological recordings of brain neuronal activity and their analysis provide a basis for exploring the structure of brain function and nervous system investigation. The recorded signals are typically a combination of spikes and noise. High amounts of background noise and possibility of electric sign…
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10 results for “spike-sorting”
Spike sorting is a fundamental preprocessing step in neuroscience that is central to access simultaneous but distinct neuronal activities and therefore to better understand the animal or even human brain. But numerical complexity limits studies that require processing large scale datasets in terms of number of electrod…
I propose a frequency domain adaptation of the Expectation Maximization (EM) algorithm to group a family of time series in classes of similar dynamic structure. It does this by viewing the magnitude of the discrete Fourier transform (DFT) of each signal (or power spectrum) as a probability density/mass function (pdf/pm…
Clustering with Fast, Automated and Reproducible assessment applied to longitudinal neural trackingstat.ML
C-FAR automates clustering assessment for neural tracking.
problem Manual assessment of clusters by humans is slow and impractical for large datasets.
method C-FAR uses automated feedback queries to select optimal clustering from multiple algorithms.
result C-FAR produces near-perfect clustering on simulated neural data.
We introduce the functional mean-shift algorithm, an iterative algorithm for estimating the local modes of a surrogate density from functional data. We show that the algorithm can be used for cluster analysis of functional data. We propose a test based on the bootstrap for the significance of the estimated local modes …
Neural Clustering Processesstat.ML
Probabilistic clustering models (or equivalently, mixture models) are basic building blocks in countless statistical models and involve latent random variables over discrete spaces. For these models, posterior inference methods can be inaccurate and/or very slow. In this work we introduce deep network architectures tra…
Short-and-sparse deconvolution (SaSD) is the problem of extracting localized, recurring motifs in signals with spatial or temporal structure. Variants of this problem arise in applications such as image deblurring, microscopy, neural spike sorting, and more. The problem is challenging in both theory and practice, as na…
Given a convolutional dictionary underlying a set of observed signals, can a carefully designed auto-encoder recover the dictionary in the presence of noise? We introduce an auto-encoder architecture, termed constrained recurrent sparse auto-encoder (CRsAE), that answers this question in the affirmative. Given an input…
Approximate inference in high-dimensional, discrete probabilistic models is a central problem in computational statistics and machine learning. This paper describes discrete particle variational inference (DPVI), a new approach that combines key strengths of Monte Carlo, variational and search-based techniques. DPVI is…
Diffusion-weighted magnetic resonance imaging (DWI) and fiber tractography are the only methods to measure the structure of the white matter in the living human brain. The diffusion signal has been modelled as the combined contribution from many individual fascicles of nerve fibers passing through each location in the …