Although the sequence-to-sequence (encoder-decoder) model is considered the state-of-the-art in deep learning sequence models, there is little research into using this model for recovering missing sensor data. The key challenge is that the missing sensor data problem typically comprises three sequences (a sequence of o…
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48 results for “sequencing data”
The paper extends confidence sequences for infinite variance data.
problem Addressing confidence sequences for distributions with infinite variance.
method Establishing lower bounds and deriving tight confidence sequences for relaxed bounded -moment distributions.
result Derived confidence sequences are tighter than those using Dubins-Savage inequality.
Mining tasks over sequential data, such as clickstreams and gene sequences, require a careful design of embeddings usable by learning algorithms. Recent research in feature learning has been extended to sequential data, where each instance consists of a sequence of heterogeneous items with a variable length. However, m…
Predicting Sequences of Traversed Nodes in Graphs using Network Models with Multiple Higher Orderscs.LG
Predicts node sequences in graphs using multi-order network models.
problem Predicting sequences of node traversals in graphs.
method Combines multiple higher-order network models into a multi-order model, fitting and selecting the optimal maximum order.
result Outperforms state-of-the-art algorithms for next-element and full sequence prediction.
Many real-world applications require robust algorithms to learn point processes based on a type of incomplete data --- the so-called short doubly-censored (SDC) event sequences. We study this critical problem of quantitative asynchronous event sequence analysis under the framework of Hawkes processes by leveraging the …
Paper tackles adaptive deletion of data points from trained models.
problem Adaptive deletion of data points from trained models.
method Reduction from adaptive to non-adaptive deletion guarantees using differential privacy and max information.
result Strong provable deletion guarantees for adaptive deletion sequences.
Data of practical interest - such as personal records, transaction logs, and medical histories - are sequential collections of events relevant to a particular source entity. Recent studies have attempted to link sequences that represent a common entity across data sets to allow more comprehensive statistical analyses a…
New KNN test improves association analysis of high-dimensional sequencing data.
problem Challenges in using neural networks for high-dimensional sequencing data analysis.
method Kernel-based neural network (KNN) test for complex association analysis.
result KNN test outperforms SKAT in detecting non-linear and interaction effects.
This thesis investigates unsupervised time series representation learning for sequence prediction problems, i.e. generating nice-looking input samples given a previous history, for high dimensional input sequences by decoupling the static input representation from the recurrent sequence representation. We introduce thr…
Data privacy is an important issue for "machine learning as a service" providers. We focus on the problem of membership inference attacks: given a data sample and black-box access to a model's API, determine whether the sample existed in the model's training data. Our contribution is an investigation of this problem in…
Generative adversarial nets (GAN) has been successfully introduced for generating text to alleviate the exposure bias. However, discriminators in these models only evaluate the entire sequence, which causes feedback sparsity and mode collapse. To tackle these problems, we propose a novel mechanism. It first segments th…
We suggest a novel method of clustering and exploratory analysis of temporal event sequences data (also known as categorical time series) based on three-dimensional data grid models. A data set of temporal event sequences can be represented as a data set of three-dimensional points, each point is defined by three varia…
In this work, we propose a novel probabilistic sequence model that excels at capturing high variability in time series data, both across sequences and within an individual sequence. Our method uses temporal latent variables to capture information about the underlying data pattern and dynamically decodes the latent info…
Applying machine learning models to meteorological data brings many opportunities to the Geosciences field, such as predicting future weather conditions more accurately. In recent years, modeling meteorological data with deep neural networks has become a relevant area of investigation. These works apply either recurren…
DNA sequencing to identify genetic variants is becoming increasingly valuable in clinical settings. Assessment of variants in such sequencing data is commonly implemented through Bayesian heuristic algorithms. Machine learning has shown great promise in improving on these variant calls, but the input for these is still…
Improves sequence modeling with a flow-based recurrent mixture density network.
problem Sequence modeling and sequence-to-sequence mapping applications.
method Generalized recurrent mixture density networks using normalized flow transformations.
result Significantly improved fit to image sequences measured by log-likelihood.
nTreeClus clusters categorical sequences using tree-based learners and k-mers.
problem Challenges in clustering categorical and sequential data.
method nTreeClus uses Tree-based Learners, k-mers, and autoregressive models for categorical time series.
result nTreeClus outperformed baseline methods in various validation metrics.
Generative Adversarial Networks (GANs) have been used in many different applications to generate realistic synthetic data. We introduce a novel GAN with Autoencoder (GAN-AE) architecture to generate synthetic samples for variable length, multi-feature sequence datasets. In this model, we develop a GAN architecture with…
A novel transformer model improves classification of partially ordered sequences.
problem Classification of partially ordered sequences with uncertainty in timestamps.
method Developed a transformer-based model for partially ordered sequences, benchmarked against set models.
result Transformer-based model outperforms set models on three datasets.
Sequence models quantify uncertainty over latent concepts.
problem Quantifying uncertainty in latent environments.
method Exchangeable sequence models, equivalent to empirical Bayes and posterior inference.
result Sequence prediction loss controls uncertainty quantification.
This paper proposes a new meta-learning method -- named HARMLESS (HAwkes Relational Meta LEarning method for Short Sequences) for learning heterogeneous point process models from short event sequence data along with a relational network. Specifically, we propose a hierarchical Bayesian mixture Hawkes process model, whi…
Sequence-to-sequence models predict resource usage for co-scheduled jobs in data centers.
problem Challenges in co-scheduling jobs due to resource interference and inefficiencies.
method Sequence-to-sequence models based on recurrent neural networks for workload interference prediction.
result Models accurately forecast resource usage trends from job profiles, improving scheduling decisions.
Convergence Analysis of Real-time Recurrent Learning (RTRL) for a class of Recurrent Neural Networkscs.LG
RTRL optimizes long sequences without truncation, converging to loss minima.
problem Inaccuracies in TBPTT for long sequences.
method Online optimization with exact gradient calculation.
result RTRL converges to loss minima for a class of RNNs.
CLVSA predicts financial market trends using LSTM and attention mechanisms.
problem Predicting trends in financial markets due to complex interactions.
method Hybrid model combining LSTM, sequence-to-sequence, attention, and convolutional LSTM.
result CLVSA outperforms basic models in predicting financial market trends.
The availability of large amounts of time series data, paired with the performance of deep-learning algorithms on a broad class of problems, has recently led to significant interest in the use of sequence-to-sequence models for time series forecasting. We provide the first theoretical analysis of this time series forec…
Recurrent Neural Networks (RNN), Long Short-Term Memory Networks (LSTM), and Memory Networks which contain memory are popularly used to learn patterns in sequential data. Sequential data has long sequences that hold relationships. RNN can handle long sequences but suffers from the vanishing and exploding gradient probl…
Bayesian context trees capture complex dependencies in categorical sequences.
problem Complex, long-range dependencies in categorical sequences are not well captured by simple models.
method Parsimonious Bayesian context trees with model-based agglomerative clustering for efficient inference.
result The proposed framework outperforms existing models on real-world data.
Researchers develop flexible kernels for biological sequences with guaranteed reliability.
problem Challenges in applying machine learning to biological sequences, including unreliable methods.
method Theoretical analysis and development of modified kernels to ensure reliability and accuracy.
result Developed kernels that are universal, characteristic, and metrize the space of distributions for biological sequences.
Summarization of long sequences into a concise statement is a core problem in natural language processing, requiring non-trivial understanding of the input. Based on the promising results of graph neural networks on highly structured data, we develop a framework to extend existing sequence encoders with a graph compone…
Sequence classification is an important data mining task in many real world applications. Over the past few decades, many sequence classification methods have been proposed from different aspects. In particular, the pattern-based method is one of the most important and widely studied sequence classification methods in …
Machine learning accurately diagnoses cancer from whole genome sequencing data.
problem Accurate cancer diagnosis at all stages.
method Novel MLAC (Machine Learning Against Cancer) method using next-gen RNA sequencing.
result Perfect precision, sensitivity, and specificity achieved for most tumor types.
This paper presents a novel end-to-end approach to program repair based on sequence-to-sequence learning. We devise, implement, and evaluate a system, called SequenceR, for fixing bugs based on sequence-to-sequence learning on source code. This approach uses the copy mechanism to overcome the unlimited vocabulary probl…
Tensor networks are a powerful modeling framework developed for computational many-body physics, which have only recently been applied within machine learning. In this work we utilize a uniform matrix product state (u-MPS) model for probabilistic modeling of sequence data. We first show that u-MPS enable sequence-level…
Generative models have long been the dominant approach for speech recognition. The success of these models however relies on the use of sophisticated recipes and complicated machinery that is not easily accessible to non-practitioners. Recent innovations in Deep Learning have given rise to an alternative - discriminati…
Sequencer algorithm detects main trends in complex datasets.
problem Detecting simple phenomena in complex data.
method Constructs graphs from data similarities, identifies elongated trends.
result Sequencer outperforms t-SNE and UMAP in identifying main trends.
New flexible confidence sequences for robust statistical inference.
problem Creating robust statistical inference methods that work under mild assumptions.
method Proposed a new class of asymptotic time-uniform confidence sequences.
result Sharp asymptotic time-uniform confidence sequences achieved under mild assumptions.
Deep recurrent neural networks perform well on sequence data and are the model of choice. However, it is a daunting task to decide the structure of the networks, i.e. the number of layers, especially considering different computational needs of a sequence. We propose a layer flexible recurrent neural network with adapt…
We introduce the problem of reconstructing a sequence of multidimensional real vectors where some of the data are missing. This problem contains regression and mapping inversion as particular cases where the pattern of missing data is independent of the sequence index. The problem is hard because it involves possibly m…
Bayesian method detects Markov order in network paths more reliably.
problem Detecting Markov order in constrained categorical sequences.
method Multi-order Bayesian modelling framework.
result Bayesian method detects correct Markov order more reliably than competing methods.
Sequence feature embedding is a challenging task due to the unstructuredness of sequence, i.e., arbitrary strings of arbitrary length. Existing methods are efficient in extracting short-term dependencies but typically suffer from computation issues for the long-term. Sequence Graph Transform (SGT), a feature embedding …
Spacetimeformer learns spatiotemporal relationships from data alone.
problem Forecasting multivariate time series with distinct spatial relationships.
method Transformers with dynamic graph connections learning interactions between space, time, and value.
result Competitive results on various time series prediction benchmarks.
Synthetic data helps prevent forgetting when learning sequentially.
problem Catastrophic forgetting in neural networks.
method Generate synthetic data via two-step optimisation process using meta-gradients.
result Training on synthetic data prevents forgetting when learning sequentially.
This work compresses sequences by treating them as continuous-time processes, enabling efficient discretization.
problem Efficient compression of sequences, especially with deep learning models that scale with sequence length.
method Treat sequences as continuous-time processes, learn efficient discretization, and decode at different time intervals.
result Automatic bit rate reductions in video and motion capture sequences using learned discretization.
Proposes OC4Seq for detecting anomalies in discrete event sequences.
problem Challenges in detecting anomalies in discrete event sequences, including data imbalance, discrete events, and sequential nature.
method Integrates anomaly detection with recurrent neural networks (RNNs) to embed sequences into latent spaces and designs a multi-scale RNN framework to capture multi-scale sequential patterns.
result OC4Seq consistently outperforms various baselines on three benchmark datasets.
Improved neural models for diverse user event sequences.
problem Challenges in modeling diverse user event sequences.
method Mixtures of latent embeddings with amortized variational inference.
result Systematic improvements over existing work for various predictive metrics.
Paper proposes semi-supervised learning using change points for sequence classification.
problem Limited labeled data for sequential sensor data classification.
method Change point detection for identifying class changes, semi-supervised learning with labeled and unlabeled data.
result Improved classification performance on human activity recognition datasets.
Rapid progress in deep learning has spurred its application to bioinformatics problems including protein structure prediction and design. In classic machine learning problems like computer vision, progress has been driven by standardized data sets that facilitate fair assessment of new methods and lower the barrier to …
OptiGAN uses GAN and RL to optimize sequence generation for specific goals.
problem Challenging in sequence generation tasks to generate sequences with specific desired goals.
method Integrates GAN and RL to optimize desired goal scores using policy gradients.
result Achieves higher desired scores in text and real-valued sequence generation.