Single-timescale analysis improves convergence in multi-sequence stochastic approximation.
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With ongoing developments and innovations in single-cell RNA sequencing methods, advancements in sequencing performance could empower significant discoveries as well as new emerging possibilities to address biological and medical investigations. In the study, we will be using the dataset collected by the authors of Sys…
New KNN test improves association analysis of high-dimensional sequencing data.
In this paper, we explore the effectiveness of dynamic analysis techniques for identifying malware, using Hidden Markov Models (HMMs) and Profile Hidden Markov Models (PHMMs), both trained on sequences of API calls. We contrast our results to static analysis using HMMs trained on sequences of opcodes, and show that dyn…
Non-parametric estimators improve quickest changepoint detection under irregular sequence lengths.
Study of BGG sequences on foliated manifolds with transverse parabolic geometry.
Develops confidence bounds for off-policy evaluation in contextual bandits.
CGAN fails to improve deterministic sequence predictions, revealing a theoretical limitation.
Multimodal machine learning is a core research area spanning the language, visual and acoustic modalities. The central challenge in multimodal learning involves learning representations that can process and relate information from multiple modalities. In this paper, we propose two methods for unsupervised learning of j…
The availability of large amounts of time series data, paired with the performance of deep-learning algorithms on a broad class of problems, has recently led to significant interest in the use of sequence-to-sequence models for time series forecasting. We provide the first theoretical analysis of this time series forec…
Proves solution uniqueness for biomembrane shape prediction.
RTRL optimizes long sequences without truncation, converging to loss minima.
Survey of nonnegative scalar curvature sequences and their limits.
Theoretical analysis shows MDMs can be efficient but not for all metrics.
Transformers can interpolate finite input sequences exactly.
This article studies hypoellipticity on general filtered manifolds. We extend the Rockland criterion to a pseudodifferential calculus on filtered manifolds, construct a parametrix and describe its precise analytic structure. We use this result to study Rockland sequences, a notion generalizing elliptic sequences to fil…
Spectral sequence analysis for Sobolev mappings in Carnot groups.
New Performer model tackles long-sequence protein modeling.
Mining tasks over sequential data, such as clickstreams and gene sequences, require a careful design of embeddings usable by learning algorithms. Recent research in feature learning has been extended to sequential data, where each instance consists of a sequence of heterogeneous items with a variable length. However, m…
We propose using canonical correlation analysis (CCA) to generate features from sequences of medical billing codes. Applying this novel use of CCA to a database of medical billing codes for patients with diverticulitis, we first demonstrate that the CCA embeddings capture meaningful relationships among the codes. We th…
New model captures long-range patterns in sequences efficiently.
Eye Movement analysis with Hidden Markov Models (EMHMM) is a method for modeling eye fixation sequences using hidden Markov models (HMMs). In this report, we run a simulation study to investigate the estimation error for learning HMMs with variational Bayesian inference, with respect to the number of sequences and the …
The widely used genetic pleiotropic analysis of multiple phenotypes are often designed for examining the relationship between common variants and a few phenotypes. They are not suited for both high dimensional phenotypes and high dimensional genotype (next-generation sequencing) data. To overcome these limitations, we …
Amino acid sequence portrays most intrinsic form of a protein and expresses primary structure of protein. The order of amino acids in a sequence enables a protein to acquire a particular stable conformation that is responsible for the functions of the protein. This relationship between a sequence and its function motiv…
Expectation Maximization (EM) is among the most popular algorithms for estimating parameters of statistical models. However, EM, which is an iterative algorithm based on the maximum likelihood principle, is generally only guaranteed to find stationary points of the likelihood objective, and these points may be far from…
New methods improve analysis of single cell RNA sequencing data.
The goal of this article is to understand some interesting features of sequences of arbitrage operations, which look relevant to various processes in Economics and Finances. In the second part of the paper, analysis of sequences of arbitrages is reformulated in the linear algebra terms. This admits an elegant geometric…
We propose the first global accelerated gradient method for Riemannian manifolds. Toward establishing our result we revisit Nesterov's estimate sequence technique and develop an alternative analysis for it that may also be of independent interest. Then, we extend this analysis to the Riemannian setting, localizing the …
Study on convergence of transformed metric spaces as dimensions grow.
Many real-world applications require robust algorithms to learn point processes based on a type of incomplete data --- the so-called short doubly-censored (SDC) event sequences. We study this critical problem of quantitative asynchronous event sequence analysis under the framework of Hawkes processes by leveraging the …
Despite the widespread adoption of Transformer models for NLP tasks, the expressive power of these models is not well-understood. In this paper, we establish that Transformer models are universal approximators of continuous permutation equivariant sequence-to-sequence functions with compact support, which is quite surp…
Study SGD dynamics in sequence models, revealing training phases and influence of sequence length.
Proves certain Calabi-Yau varieties are projective.
Next-generation sequencing (NGS) to profile temporal changes in living systems is gaining more attention for deriving better insights into the underlying biological mechanisms compared to traditional static sequencing experiments. Nonetheless, the majority of existing statistical tools for analyzing NGS data lack the c…
New algorithms for regression with adversarial responses on various metric spaces.
Price movements of stock market are not totally random. In fact, what drives the financial market and what pattern financial time series follows have long been the interest that attracts economists, mathematicians and most recently computer scientists [17]. This paper gives an idea about the trend analysis of stock mar…
Sequencer algorithm detects main trends in complex datasets.
Transformer model predicts stock trends using technical data and sentiment analysis.
In biological research machine learning algorithms are part of nearly every analytical process. They are used to identify new insights into biological phenomena, interpret data, provide molecular diagnosis for diseases and develop personalized medicine that will enable future treatments of diseases. In this paper we (1…
Tutorial on using neural networks for single cell data analysis.
New -means method clusters radar image sequences using SPD matrices.
This paper focuses on learning rate analysis of distributed kernel ridge regression for strong mixing sequences. Using a recently developed integral operator approach and a classical covariance inequality for Banach-valued strong mixing sequences, we succeed in deriving optimal learning rate for distributed kernel ridg…
We describe a fully data driven model that learns to perform a retrosynthetic reaction prediction task, which is treated as a sequence-to-sequence mapping problem. The end-to-end trained model has an encoder-decoder architecture that consists of two recurrent neural networks, which has previously shown great success in…
This paper applies deep learning to ordinal regression, modeling it as a binary search.
Understanding optimal prompts for binary sequence predictors is challenging.
We study the relationship between catastrophic forgetting and properties of task sequences. In particular, given a sequence of tasks, we would like to understand which properties of this sequence influence the error rates of continual learning algorithms trained on the sequence. To this end, we propose a new procedure …
IAE extracts innovations sequences for non-Gaussian processes.
Video sequences contain rich dynamic patterns, such as dynamic texture patterns that exhibit stationarity in the temporal domain, and action patterns that are non-stationary in either spatial or temporal domain. We show that a spatial-temporal generative ConvNet can be used to model and synthesize dynamic patterns. The…