A locally-built, LLM-digested index of recent arXiv papers in quant finance, geometry/topology, and statistical ML — keyword search served straight from SQLite on this machine.
The paper uses VGG-19 for plant species classification from leaf images.
Deep semi-supervised learning identifies tree species from natural images.
Interpretable neural network for plant traits and species identification.
Ecologists have long suspected that species are more likely to interact if their traits match in a particular way. For example, a pollination interaction may be more likely if the proportions of a bee's tongue fit a plant's flower shape. Empirical estimates of the importance of trait-matching for determining species in…
Fourier-transform infra-red (FTIR) spectra of samples from 7 plant species were used to explore the influence of preprocessing and feature extraction on efficiency of machine learning algorithms. Wavelet Tensor Train (WTT) and Discrete Wavelet Transforms (DWT) were compared as feature extraction techniques for FTIR dat…
Availability of an explainable deep learning model that can be applied to practical real world scenarios and in turn, can consistently, rapidly and accurately identify specific and minute traits in applicable fields of biological sciences, is scarce. Here we consider one such real world example viz., accurate identific…
Long non-coding RNAs (lncRNAs) are a class of non-coding RNAs which play a significant role in several biological processes. RNA-seq based transcriptome sequencing has been extensively used for identification of lncRNAs. However, accurate identification of lncRNAs in RNA-seq datasets is crucial for exploring their char…
This paper improves prediction accuracy for multi-input classification tasks using p-value aggregation.
The paper uses a graph autoencoder to learn unbiased plant-pollinator interaction embeddings.
Forest tree species mapped with high accuracy using satellite data.
Image classification system identifies bumble bee species from images.
Earth observation embeddings can convert discrete biome maps into continuous representations that better capture ecological variation.
Deep learning identifies frog species and detects new ones.
Plants monitor their surrounding environment and control their physiological functions by producing an electrical response. We recorded electrical signals from different plants by exposing them to Sodium Chloride (NaCl), Ozone (O3) and Sulfuric Acid (H2SO4) under laboratory conditions. After applying pre-processing tec…
Robotic weed control has seen increased research of late with its potential for boosting productivity in agriculture. Majority of works focus on developing robotics for croplands, ignoring the weed management problems facing rangeland stock farmers. Perhaps the greatest obstacle to widespread uptake of robotic weed con…
Avian Influenza breakouts cause millions of dollars in damage each year globally, especially in Asian countries such as China and South Korea. The impact magnitude of a breakout directly correlates to time required to fully understand the influenza virus, particularly the interspecies pathogenicity. The procedure requi…
Phytoplankton plays an important role in marine ecosystem. It is defined as a biological factor to assess marine quality. The identification of phytoplankton species has a high potential for monitoring environmental, climate changes and for evaluating water quality. However, phytoplankton species identification is not …
Deep learning improves tree species classification accuracy in imbalanced contexts.
StatEcoNet models species distribution using neural networks to correct observation errors.
Research into automated systems for detecting and classifying marine mammals in acoustic recordings is expanding internationally due to the necessity to analyze large collections of data for conservation purposes. In this work, we present a Convolutional Neural Network that is capable of classifying the vocalizations o…
Plants sense their environment by producing electrical signals which in essence represent changes in underlying physiological processes. These electrical signals, when monitored, show both stochastic and deterministic dynamics. In this paper, we compute 11 statistical features from the raw non-stationary plant electric…
Fault detection in industrial plants is a hot research area as more and more sensor data are being collected throughout the industrial process. Automatic data-driven approaches are widely needed and seen as a promising area of investment. This paper proposes an effective machine learning algorithm to predict industrial…
Microbial clades modeling is a challenging problem in biology based on microarray genome sequences, especially in new species gene isolates discovery and category. Marker family genome sequences play important roles in describing specific microbial clades within species, a framework of support vector machine (SVM) base…
Automated recognition and classification of bacteria species from microscopic images have significant importance in clinical microbiology. Bacteria classification is usually carried out manually by biologists using different shapes and morphologic characteristics of bacteria species. The manual taxonomy of bacteria typ…
Understanding how species are distributed across landscapes over time is a fundamental question in biodiversity research. Unfortunately, most species distribution models only target a single species at a time, despite strong ecological evidence that species are not independently distributed. We propose Deep Multi-Speci…
Traditionally, there are three species of classification: unsupervised, supervised, and semi-supervised. Supervised and semi-supervised classification differ by whether or not weight is given to unlabelled observations in the classification procedure. In unsupervised classification, or clustering, all observations are …
Framework uncovers symmetric and asymmetric species associations from data.
A looming question that must be solved before robotic plant phenotyping capabilities can have significant impact to crop improvement programs is scalability. High Throughput Phenotyping (HTP) uses robotic technologies to analyze crops in order to determine species with favorable traits, however, the current practices r…
Neural network model improves leaf spectral reflectance prediction for grapevines.
Heterogeneous GNN improves species distribution modeling.
GeoLifeCLEF 2020 dataset pairs species observations with environmental data.
SDSR reconstructs species trees from genetic markers efficiently.
SLIC-UAV monitors forest recovery using UAVs and machine learning.
Machine learning methods have found many applications in Raman spectroscopy, especially for the identification of chemical species. However, almost all of these methods require non-trivial preprocessing such as baseline correction and/or PCA as an essential step. Here we describe our unified solution for the identifica…
Gaussian process framework learns interaction kernels in multi-species particle systems.
Deep CNNs struggle with rare taxa; one-class classifiers help identify them.
PHIBP models complex microbiome data with shared parameters.
Deep model tackles zero-inflated multi-species abundance estimation.
The evolution of drug-resistant microbial species is one of the major challenges to global health. The development of new antimicrobial treatments such as antimicrobial peptides needs to be accelerated to combat this threat. However, the discovery of novel antimicrobial peptides is hampered by low-throughput biochemica…
DeepMaxent uses neural networks to improve species distribution models.
We consider the problem of estimating the evolutionary history of a set of species (phylogeny or species tree) from several genes. It is known that the evolutionary history of individual genes (gene trees) might be topologically distinct from each other and from the underlying species tree, possibly confounding phyloge…
In this paper, we implement multi-label neural networks with optimal thresholding to identify gas species among a multi gas mixture in a cluttered environment. Using infrared absorption spectroscopy and tested on synthesized spectral datasets, our approach outperforms conventional binary relevance - partial least squar…
Study examines how disturbances affect financial returns in Austrian forests.
Bayesian method improves estimation of unseen species.
Spectral algorithms solve optimal community detection and related problems.
Exact partitioning of high-order planted models achieved through convex optimization.
As the technology is advancing, audio recognition in machine learning is improved as well. Research in audio recognition has traditionally focused on speech. Living creatures (especially the small ones) are part of the whole ecosystem, monitoring as well as maintaining them are important tasks. Species such as animals …
New insights link diverse statistical problems via secret leakage planted clique.