TorchIO simplifies medical image processing for deep learning.
problem Challenges in processing medical images like MRI and CT.
method Efficient loading, preprocessing, augmentation, and patch-based sampling.
result Enables researchers to focus on deep learning experiments.
In recent years, many publications showed that convolutional neural network based features can have a superior performance to engineered features. However, not much effort was taken so far to extract local features efficiently for a whole image. In this paper, we present an approach to compute patch-based local feature…
Data is said to follow the transform (or analysis) sparsity model if it becomes sparse when acted on by a linear operator called a sparsifying transform. Several algorithms have been designed to learn such a transform directly from data, and data-adaptive sparsifying transforms have demonstrated excellent performance i…
Few-Shot Diffusion Models generate new samples from small image sets.
problem Generating new samples from a few images.
method Conditional Denoising Diffusion Probabilistic Models (DDPM) with patch-based input set information.
result FSDM can generate samples from previously unseen classes conditioned on as few as 5 samples.
Improved self-supervised learning for document images.
problem Performance of self-supervised pre-training on document images is poor.
method Proposed context-aware alternatives and a novel multi-modal method.
result Novel method outperforms other self-supervised methods on document image classification.
Convolutional dictionary learning (CDL) estimates shift invariant basis adapted to multidimensional data. CDL has proven useful for image denoising or inpainting, as well as for pattern discovery on multivariate signals. As estimated patterns can be positioned anywhere in signals or images, optimization techniques face…
New mechanism discovered for feature learning in CNNs.
problem Understanding how CNNs learn features from images.
method Proposed Convolutional Neural Feature Ansatz linking filter covariances to patch-based AGOPs.
result Deep ConvRFM algorithm learns features similar to deep CNNs, improving performance.
We present an updated version of the VESICLE-CNN algorithm presented by Roncal et al. (2014). The original implementation makes use of a patch-based approach. This methodology is known to be slow due to repeated computations. We update this implementation to be fully convolutional through the use of dilated convolution…
Deep neural network models used for medical image segmentation are large because they are trained with high-resolution three-dimensional (3D) images. Graphics processing units (GPUs) are widely used to accelerate the trainings. However, the memory on a GPU is not large enough to train the models. A popular approach to …
Deep networks are able to learn highly predictive models of video data. Due to video length, a common strategy is to train them on small video snippets. We apply the deep Taylor / LRP technique to understand the deep network's classification decisions, and identify a "border effect": a tendency of the classifier to loo…
In this paper we address the problem of understanding the success of algorithms that organize patches according to graph-based metrics. Algorithms that analyze patches extracted from images or time series have led to state-of-the art techniques for classification, denoising, and the study of nonlinear dynamics. The mai…
Semantic segmentation is an established while rapidly evolving field in medical imaging. In this paper we focus on the segmentation of brain Magnetic Resonance Images (MRI) into cerebral structures using convolutional neural networks (CNN). CNNs achieve good performance by finding effective high dimensional image featu…
GANs improve echo frame generation with labeled patches.
problem Automated echocardiography with limited labels.
method Conditional GAN with patch-based discriminator.
result GAN-enhanced echo frames match given segmentation masks.
Novel approach combines local and global brain changes for AD prediction.
problem Detecting Alzheimer's disease through local and global brain changes.
method Patch-based 3D-CNNs combined with global topological features for multi-scale brain tissue connectivity.
result Average precision score of 0.95 for classifying cognitively normal subjects and AD patients (prevalence ~55%).
Deep learning for COVID-19 diagnosis using CXR images with limited data.
problem Difficulty in collecting CXR data for deep learning due to the pandemic.
method Patch-based convolutional neural network with limited trainable parameters.
result Achieves state-of-the-art performance and interpretable saliency maps.
The problem of Poisson denoising appears in various imaging applications, such as low-light photography, medical imaging and microscopy. In cases of high SNR, several transformations exist so as to convert the Poisson noise into an additive i.i.d. Gaussian noise, for which many effective algorithms are available. Howev…
A new tensor network method for image classification reduces computation cost.
problem Efficiently classifying images in high-dimensional spaces.
method Proposes a multi-layered tensor network (MLTN) that performs one MPS operation per layer, reducing computation cost.
result Reduces computation cost without degrading performance.
In this paper, we introduce multi-task learning (MTL) to data harmonization (DH); where we aim to harmonize images across different acquisition platforms and sites. This allows us to integrate information from multiple acquisitions and improve the predictive performance and learning efficiency of the harmonization mode…
Digital histology images are amenable to the application of convolutional neural network (CNN) for analysis due to the sheer size of pixel data present in them. CNNs are generally used for representation learning from small image patches (e.g. 224x224) extracted from digital histology images due to computational and me…
Convolutional neural networks (CNN) have led to many state-of-the-art results spanning through various fields. However, a clear and profound theoretical understanding of the forward pass, the core algorithm of CNN, is still lacking. In parallel, within the wide field of sparse approximation, Convolutional Sparse Coding…
A method for concept-based learning using probabilistic inference and expert rules.
problem Concept-based learning with limited training data.
method Divide images into patches, transform into embeddings, cluster, and use frequentist inference to find concepts.
result FI-CBL outperforms concept bottleneck model in small data scenarios.
Malaria is a serious infectious disease that is responsible for over half million deaths yearly worldwide. The major cause of these mortalities is late or inaccurate diagnosis. Manual microscopy is currently considered as the dominant diagnostic method for malaria. However, it is time consuming and prone to human error…
DRFormer uses dynamic tokenization and multi-scale transformer to forecast long time series.
problem Forecasting long-term time series data across diverse scales.
method Dynamic tokenizer, multi-scale transformer, dynamic sparse learning, rotary position encoding.
result DRFormer outperforms existing methods in forecasting accuracy.
CNN-based prostate cancer grading improves accuracy and efficiency.
problem Manual Gleason grading by pathologists is time-consuming and prone to errors.
method Patch-Based Image Reconstruction (PBIR), Distribution Correction (DC), Quadratic Weighted Mean Square Error (QWMSE).
result Achieved superior expert-level performance (0.8885 quadratic-weighted kappa coefficient).
PatchGT uses non-trainable graph patches to improve graph representation learning.
problem Learning high-level information in graph tasks with direct Transformer models.
method PatchGT segments graphs into non-trainable patches, uses GNN for patch-level learning, and Transformer for graph-level learning.
result PatchGT achieves higher expressiveness and competitive performance on benchmark datasets.
The development of computed tomography (CT) image reconstruction methods that significantly reduce patient radiation exposure while maintaining high image quality is an important area of research in low-dose CT (LDCT) imaging. We propose a new penalized weighted least squares (PWLS) reconstruction method that exploits …
Enhanced Sampling Scheme improves masked generative modeling.
problem Limitations of existing sampling schemes in masked non-autoregressive generative modeling.
method ESS consists of three stages: Naive Iterative Decoding, Critical Reverse Sampling, and Critical Resampling.
result ESS achieves significant performance gains in unconditional and class-conditional sampling.
PRS improves rejection sampling by learning better proposals.
problem High rejection rate in traditional rejection sampling.
method PRS uses a kernel estimator to learn better sampling proposals.
result PRS guarantees a low number of accepted samples.
This paper reviews various sampling methods from statistics and machine learning.
problem Addressing sampling methods in statistics and machine learning.
method Explains and reviews simple random sampling, bootstrapping, stratified sampling, cluster sampling, multistage sampling, network sampling, snowball sampling, and sampling from cumulative distribution function.
result Summarizes characteristics, pros, and cons of different sampling methods.
RISA improves VFL by using imputed samples with low uncertainty.
problem Limited overlapping samples constrain VFL performance.
method Imputing non-overlapping samples and using evidence theory to select reliable imputed samples.
result Significant performance gains achieved, especially with limited overlapping samples.
Improved privacy-preserving methods for estimating multiple samples from distributions.
problem Estimating multiple samples from distributions while maintaining privacy.
method Developed new multi-sampling techniques for differentially private data estimation.
result Achieved significant reduction in sample complexity for multi-sampling from finite domains and Gaussian distributions.
Paper introduces a new sampling method combining Consistency Models with importance sampling.
problem Inherent errors in samples and high NFEs for high-quality samples in Boltzmann distributions.
method Combines Consistency Models with importance sampling to produce unbiased samples with minimal NFEs.
result Produces unbiased samples using only 6-25 NFEs, comparable to 100 NFEs for DDPMs.
Neural network accuracy improves with denser training samples.
problem Improving neural network accuracy on unseen test samples.
method Bounding empirical training error smoothed across activation regions and using it to discard high-risk test samples.
result Discarding high-risk test samples based on error bounds improves prediction accuracy by up to 20%.
Wedge Sampling improves tensor completion with nearly-linear sample complexity.
problem Efficiently completing low-rank tensors from a subset of entries.
method Non-adaptive wedge sampling to promote structured connections in tensor completion.
result Polynomial-time algorithms achieve weak and exact recovery with nearly linear sample complexity.
Algorithm samples constrained stochastic differential equations.
problem Sampling stochastic differential equations with complex constraints.
method Pathspace Metropolis-adjusted manifold sampling.
result Demonstrated effectiveness in various constrained conditions.
In modern data analysis, random sampling is an efficient and widely-used strategy to overcome the computational difficulties brought by large sample size. In previous studies, researchers conducted random sampling which is according to the input data but independent on the response variable, however the response variab…
Generative models map simple samples to complex target samples.
problem Improving Monte-Carlo sampling techniques.
method Variational learning of dynamical maps between base and target measures.
result Improved sampling efficiency through feedback loops.
Sampling is a fundamental problem in computer science and statistics. However, for a given task and stream, it is often not possible to choose good sampling probabilities in advance. We derive a general framework for adaptively changing the sampling probabilities via a collection of thresholds.In general, adaptive samp…
New sampling algorithm for non-smooth potentials.
problem Sampling from non-smooth potentials.
method Proximal algorithm based on rejection sampling.
result Achieves better complexity than existing methods.
Efficiently samples sequences without replacement for machine learning models.
problem Generating diverse outputs from sequential models without duplicates.
method Incremental sampling procedure for randomized programs, including neural models.
result Efficacy and flexibility of incremental sampling for large output spaces.
Optimizes biomolecular simulations by ranking adaptive sampling policies.
problem Efficiently sampling biomolecular systems to capture complex dynamical behaviors.
method Metric-driven ranking of adaptive sampling policies to identify the optimal policy for each round.
result Different adaptive sampling policies lead to faster convergence and improved sampling performance.
Ensemble sampling approximates Thompson sampling for complex models.
problem Computational intractability of exact posterior distributions.
method Thompson sampling approximation with information-theoretic concepts.
result Established a first rigorous regret bound for ensemble sampling.
Optimizes sample and round complexity in adaptive sampling from multiple distributions.
problem Adaptive sampling from multiple distributions with limited rounds and samples.
method Introduces OODS framework and analyzes tradeoffs between sample and round complexity.
result Achieves near-optimal sample complexity and sub-polynomial round complexity.
Meta-learners improve causal effect estimation in small samples.
problem Estimating causal effects using machine learning methods.
method Sample-splitting and cross-fitting to reduce overfitting bias.
result Meta-learners' performance depends on sample size and estimation procedure.
REP-GAN improves GANs by reparameterizing proposals for better sample quality and efficiency.
problem Poor sample efficiency in GANs due to independent proposal sampling.
method REParameterizing Markov chains into the latent space of the generator to create dependent proposals.
result Empirically shows significant improvement in sample efficiency and quality.
Unified framework for model-based RL with sample complexity guarantees.
problem Designing efficient posterior sampling methods for model-based RL.
method Optimistic posterior sampling, Hellinger distance reduction, data likelihood measurement.
result Unified algorithms with state-of-the-art sample complexity guarantees.
Proposes a neural network method to combine nonprobability and probability survey samples.
problem Combining nonprobability and probability survey samples for accurate population mean estimation.
method Uses a deep neural network to estimate sampling scores from nonprobability samples and combines them with probability sample information.
result Proposed estimators improve robustness to parametric propensity-score misspecification, especially for nonlinear selection mechanisms.
Dynamic Influence Tracker measures changing sample importance during model training.
problem Static influence measurements during training overlook how sample importance varies over time.
method Dynamic Influence Tracker (DIT) captures time-varying sample influence across arbitrary time windows.
result DIT reveals distinct learning phases with shifting priorities and detects corrupted samples more efficiently.