The medical field stands to see significant benefits from the recent advances in deep learning. Knowing the uncertainty in the decision made by any machine learning algorithm is of utmost importance for medical practitioners. This study demonstrates the utility of using Bayesian LSTMs for classification of medical time…
This paper describes a time-series-based classification approach to identify similarities between bio-medical-based situations. The proposed approach allows classifying collections of time-series representing bio-medical measurements, i.e., situations, regardless of the type, the length and the quantity of the time-ser…
This paper reviews deep learning methods for handling irregularly sampled medical time series data.
problem Handling irregularly sampled medical time series data for personalized treatment and precise diagnosis.
method Summarizes and compares deep learning methods categorized by technology and task.
result Achieved good results in data imputation and downstream tasks.
Bayes-CATSI uses variational Bayesian deep learning for medical time series data imputation.
problem Missing values in medical time series data.
method Bayes-CATSI integrates variational inference for uncertainty quantification and context-aware imputation.
result Bayes-CATSI outperforms CATSI by 9.57% in imputation performance.
Rough Transformers improve efficiency for medical time-series data.
problem Efficiently modeling irregularly sampled, long-range time-series data.
method Introducing Rough Transformers, a Transformer variant with continuous-time representations and multi-view signature attention.
result Rough Transformers outperform vanilla Transformers while using less computational resources.
Generative Adversarial Networks (GANs) have shown remarkable success as a framework for training models to produce realistic-looking data. In this work, we propose a Recurrent GAN (RGAN) and Recurrent Conditional GAN (RCGAN) to produce realistic real-valued multi-dimensional time series, with an emphasis on their appli…
Study clusters Kenyan medical insurance companies based on financial performance and reporting consistency.
problem Identifying financial health and reporting consistency in Kenyan medical insurance companies.
method Advanced clustering techniques (KMeans, DTW) on financial ratios and time series data.
result Four distinct clusters identified, each representing different financial performance and reporting consistency combinations.
TNC learns time series representations by leveraging temporal neighborhoods.
problem Complex, unlabeled time series data.
method Temporal Neighborhood Coding (TNC) with a debiased contrastive objective.
result TNC outperforms other unsupervised methods in time series clustering and classification.
In this work, we investigate unsupervised representation learning on medical time series, which bears the promise of leveraging copious amounts of existing unlabeled data in order to eventually assist clinical decision making. By evaluating on the prediction of clinically relevant outcomes, we show that in a practical …
Generates synthetic health data from patient visits.
problem Lack of longitudinal, event-based medical data.
method Transformed longitudinal data into summary statistics, trained GAN.
result Synthetic data closely resembles real data univariately.
Gaussian process variational autoencoders improve disentanglement in time series data.
problem Learning disentangled representations from multivariate time series data.
method Model each latent channel with a Gaussian process prior and a structured variational distribution to capture temporal dependencies.
result Competitive performance on benchmark and real-world medical time series data.
The paper proposes a deep generative model for complex disease trajectories.
problem Modeling and analyzing complex disease trajectories.
method Deep generative time series approach with semi-supervised latent processes.
result The model can discover novel aspects of diseases and cluster them into new sub-types.
Proposes a deep learning model for probabilistic forecasting that is also interpretable.
problem Inability to explain predictions of neural network-based time series forecasting methods.
method Deep Autoregressive Networks (DANLIP) for locally interpretable probabilistic forecasting.
result DANLIP provides interpretable predictions with comparable performance to state-of-the-art methods.
TAnoGan detects anomalies in time series data using GANs.
problem Anomaly detection in time series data.
method Generative Adversarial Networks (GAN) for unsupervised anomaly detection.
result TAnoGan outperforms traditional and neural network models in anomaly detection.
ExpCLR uses expert features to improve time-series representation learning.
problem Current representation learning approaches fail to ensure useful properties for time-series data.
method ExpCLR employs expert features to replace data transformations in contrastive learning, ensuring two useful properties for time-series representations.
result ExpCLR outperforms state-of-the-art methods on three real-world time-series datasets.
Survey of data augmentation methods for improving deep learning on time series data.
problem Limited labeled data in real-world time series applications.
method Review and comparison of data augmentation methods for time series.
result Empirical comparison of data augmentation methods for various time series tasks.
Medical researchers are coming to appreciate that many diseases are in fact complex, heterogeneous syndromes composed of subpopulations that express different variants of a related complication. Time series data extracted from individual electronic health records (EHR) offer an exciting new way to study subtle differen…
New algorithm uncovers causal relations in non-stationary time series.
problem Discovering causal relations from non-stationary time series data.
method Constraint-based, non-parametric algorithm for semi-stationary time series.
result Algorithm PCMCIΩ identifies causal graph with CI tests. Capturing the dynamical properties of time series concisely as interpretable feature vectors can enable efficient clustering and classification for time-series applications across science and industry. Selecting an appropriate feature-based representation of time series for a given application can be achieved through s…
The discovery of time series motifs has emerged as one of the most useful primitives in time series data mining. Researchers have shown its utility for exploratory data mining, summarization, visualization, segmentation, classification, clustering, and rule discovery. Although there has been more than a decade of exten…
Novel method converts time series data into functional data for high dimensional classification.
problem Small sample size problem in high dimensional time series data.
method Classwise Functional Principal Component Analysis (PCA) followed by Bayesian linear classifier.
result Demonstrated efficacy on synthetic and real data sets.
A new unsupervised contrastive learning framework improves time series representation learning.
problem Lack of labeled data in time series data.
method Proposes an unsupervised contrastive learning framework using a novel contrastive loss and data augmentation.
result Framework outperforms other approaches on univariate and multivariate time series, and benefits transfer learning.
In the scenario of real-time monitoring of hospital patients, high-quality inference of patients' health status using all information available from clinical covariates and lab tests is essential to enable successful medical interventions and improve patient outcomes. Developing a computational framework that can learn…
This paper reviews causal inference methods for time series data.
problem Estimating treatment effects and identifying causal relations from time series data.
method Comprehensive review of approaches for treatment effect estimation and causal discovery.
result Provides a list of evaluation metrics and datasets for time series causal inference.
Rocket algorithm classifies time-series data efficiently using random projections and natural sparsity.
problem Time-series classification challenges in diverse fields.
method Random convolutional kernels, non-linear transformation, compressed sensing framework.
result Rocket algorithm preserves discriminative patterns in time-series data and expresses inherent sparsity.
Unsupervised learning summarizes EHR data into a patient status vector.
problem Challenges in modeling electronic health records due to irregularities and varying procedures/diagnoses.
method Two-step unsupervised representation learning scheme using auto-encoders and forecasting tasks.
result Improved generalization performance on mortality and readmission tasks.
In healthcare applications, temporal variables that encode movement, health status and longitudinal patient evolution are often accompanied by rich structured information such as demographics, diagnostics and medical exam data. However, current methods do not jointly optimize over structured covariates and time series …
Access to medical data is highly restricted due to its sensitive nature, preventing communities from using this data for research or clinical training. Common methods of de-identification implemented to enable the sharing of data are sometimes inadequate to protect the individuals contained in the data. For our researc…
Detects change points in time series focusing on specific components.
problem Identifying moments when specific components of multivariate time series change distributions.
method Two-stage non-parametric algorithm: causal structure learning followed by change point detection.
result Validated the approach on synthetic and real-world datasets.
Predicting MRI coil failures using time series classification.
problem Early detection of MRI hardware failures to prevent downtime.
method Training a statistical model on sequential image data features over time.
result LSTMs achieved an F-score of 86.43% and 98.33% accuracy in predicting coil damage.
APC overcomes missing data and class imbalance in time series data.
problem Missing data and class imbalance in time series data.
method Self-supervised learning with Autoregressive Predictive Coding (APC).
result APC improves classification performance on real-world medical datasets.
This paper reviews early time series classification methods.
problem Minimizing class prediction delay in time-sensitive applications.
method Divided into four categories: prefix based, shapelet based, model based, and miscellaneous approaches.
result Demonstrates reasonable performance in various applications.
mGRN improves multivariate time series prediction by managing marginal and joint memories.
problem Extracting dependencies in multivariate sequential data with strong serial and cross-sectional dependencies.
method Developed a novel recurrent network architecture, Memory-Gated Recurrent Networks (mGRN), with gates for marginal and joint memories.
result mGRN consistently outperforms state-of-the-art architectures on various public datasets.
MSLs use parallelizable root-finding for efficient ODE and PDE solutions.
problem Efficiently solving initial value problems for ODEs and PDEs.
method Leveraging time-parallel methods, MSLs use parallelizable root-finding algorithms.
result MSLs offer significant speedups in NFEs and inference time.
The classification of time series data is a well-studied problem with numerous practical applications, such as medical diagnosis and speech recognition. A popular and effective approach is to classify new time series in the same way as their nearest neighbours, whereby proximity is defined using Dynamic Time Warping (D…
Kernel TCK_IM tackles missing data in EHR time series, improving analysis.
problem Missing data complicates analysis of EHR time series.
method TCK_IM kernel using ensemble learning of mixed mode Bayesian mixture models.
result TCK_IM kernel effectively exploits missing data without imputation.
We present a personalized and reliable prediction model for healthcare, which can provide individually tailored medical services such as diagnosis, disease treatment, and prevention. Our proposed framework targets at making personalized and reliable predictions from time-series data, such as Electronic Health Records (…
This work aims to create a large-scale model for critical care time series data.
problem Lack of large-scale datasets and distribution shifts in critical care time series data.
method Harmonized dataset creation and transfer learning research.
result Established a foundation for large-scale multi-variate time series models in critical care.
DPSOM combines self-organizing maps with deep learning for better data clustering.
problem Improving clustering performance in complex data.
method Integrates self-organizing maps with probabilistic clustering using a VAE.
result DPSOM outperforms current deep clustering methods in various applications.
CRUs model irregular time series with continuous hidden states.
problem Handling irregular time intervals in sequential data.
method Continuous Recurrent Units (CRUs) that integrate hidden states via a linear stochastic differential equation.
result CRUs outperform methods based on neural ordinary differential equations in irregular time series interpolation.
Paper detects bias in AI medical models using CART.
problem Ensuring fairness in AI medical decision support systems.
method Uses Classification and Regression Trees (CART) algorithm to identify bias.
result Validated the CART approach in both synthetic and real-world data.
POSL is an online learning algorithm for personalized predictions.
problem Real-time personalized predictions for streaming data.
method Online Super Learner algorithm that optimizes predictions with respect to baseline covariates.
result POSL provides reliable predictions and adapts to changing data environments.
This paper explores four different visualization techniques for long short-term memory (LSTM) networks applied to continuous-valued time series. On the datasets analysed, we find that the best visualization technique is to learn an input deletion mask that optimally reduces the true class score. With a specific focus o…
High-dimensional time series are common in many domains. Since human cognition is not optimized to work well in high-dimensional spaces, these areas could benefit from interpretable low-dimensional representations. However, most representation learning algorithms for time series data are difficult to interpret. This is…
TadGAN detects anomalies in time series data using GANs and LSTM.
problem Challenges in detecting anomalies in time series data, especially without labeled data.
method TadGAN uses Generative Adversarial Networks (GANs) with LSTM Recurrent Neural Networks to capture temporal correlations and compute anomaly scores.
result TadGAN outperforms 8 baseline methods in most cases, achieving the highest averaged F1 score.
Opioid overdose rates have reached an epidemic level and state-level policy innovations have followed suit in an effort to prevent overdose deaths. State-level drug law is a set of policies that may reinforce or undermine each other, and analysts have a limited set of tools for handling the policy collinearity using st…
Deep learning speeds spectral density estimation for large 2D/3D grids.
problem Computational challenges in estimating spectral densities for large grids.
method Deep learning neural network for spectral density estimation.
result Deep learning estimator is a universal approximator and faster than existing methods.
DeepPPMNet forecasts EMS demand and performs causal analyses for policy-making.
problem Accurate prediction and causal analysis of EMS demand for effective policy-making.
method DeepPPMNet, a LSTM-based framework, globally forecasts and analyzes causal relationships using Granger causality.
result DeepPPMNet outperforms traditional methods in forecasting EMS demand and policy-making.