arXiv research

Study homology of periodic cell complexes using quotient spaces and spectral sequences.

Compact Kähler manifold minus a divisor is projective space.

Let $\mathbb{F}_{Θ}=G/P_{Θ}$ be a generalized flag manifold, where $G$ is a real noncompact semi-simple Lie group and $P_{Θ}$ a parabolic subgroup. A classical result says the Schubert cells, which are the closure of the Bruhat cells, endow $\mathbb{F}_Θ$ with a cellular CW structure. In this paper we exhibit explicit …

In the framework of homological characterizations of relative hyperbolicity, Groves and Manning posed the question of whether a simply connected $2$-complex $X$ with a linear homological isoperimetric inequality, a bound on the length of attaching maps of $2$-cells and finitely many $2$-cells adjacent to any edge must …

This article introduces descriptive cellular homology on cell complexes, which is an extension of J.H.C. Whitehead's CW topology. A main result is that a descriptive cellular complex is a topology on fibres in a fibre bundle. An application of two forms of cellular homology is given in terms of the persistence of shape…

Study of Betti numbers in prodsimplicial complexes for directed graphs, focusing on DNA recombination.

We study the problem of computing the homology of the configuration spaces of a finite cell complex $X$. We proceed by viewing $X$, together with its subdivisions, as a subdivisional space--a kind of diagram object in a category of cell complexes. After developing a version of Morse theory for subdivisional spaces, we …

A qualgebra $G$ is a set having two binary operations that satisfy compatibility conditions which are modeled upon a group under conjugation and multiplication. We develop a homology theory for qualgebras and describe a classifying space for it. This space is constructed from $G$-colored prisms (products of simplices) …

Let Map(K,X) denote the space of pointed continuous maps from a finite cell complex K to a space X. Let E_* be a generalized homology theory. We use Goodwillie calculus methods to prove that under suitable conditions on K and X, Map(K, X) will send a E_*--isomorphism in either variable to a map that is monic in E_* hom…

Spatial refinement of Bar-Natan homology constructed.

This article is one of three highly influential articles on the topology of manifolds written by Robert D. Edwards in the 1970's but never published. It presents the initial solutions of the fabled Double Suspension Conjecture. (The other two articles are: 'Approximating certain cell-like maps by homeomorphisms' and 'T…

New framework for sutured manifolds using handleslides and Heegaard invariants.

We introduce a construction adding low-dimensional cells to a space that satisfies certain low-dimensional conditions; it preserves high-dimensional homology with appropriate coefficients. This includes as special cases Quillen's plus construction, Bousfield's integral homology localization, the existence of Moore spac…

Study positive 3-braids to compute Khovanov homology.

Examples of Morse functions with integrable gradient flows on some classical Riemannian manifolds are considered. In particular, we show that a generic height function on the symmetric embeddings of classical Lie groups and certain symmetric spaces is a perfect Morse function, i.e. has as many critical points as the ho…

New insights into data geometry reveal manifold structure in grid-cell activity.

This is the first of two papers in which we prove that a cell model of the moduli space of curves with marked points and tangent vectors at the marked points acts on the Hochschild co--chains of a Frobenius algebra. We also prove that a there is dg--PROP action of a version of Sullivan Chord diagrams which acts on the …

We present new, unified proofs for the cell-like, $\mathbb{Z}/p$-, and $\mathbb{Q}$-resolution theorems. Our arguments employ extensions that are much simpler then those used by our predecessors. The techniques allow us to solve problems involving cohomology groups by converting them into problems about homology groups…

The paper examines topological features of ReLU networks and their relation to decision boundaries and training loss.

Script Geometry offers a new approach to discrete differential geometry.

Study homology manifolds using spectral sheaves and spectral six functor formalism.

Fintushel and Stern defined the rational blow-down construction [FS] for smooth 4-manifolds, where a linear plumbing configuration of spheres $C_n$ is replaced with a rational homology ball $B_n$, $n \geq 2$. Subsequently, Symington [Sy] defined this procedure in the symplectic category, where a symplectic $C_n$ (given…

The paper develops methods for calculating equivariant homology from Morse functions.

This is the second of two papers in which we prove that a cell model of the moduli space of curves with marked points and tangent vectors at the marked points acts on the Hochschild co--chains of a Frobenius algebra. We also prove that a there is dg--PROP action of a version of Sullivan Chord diagrams which acts on the…

The main results of this paper are: (1) If a space $X$ can be embedded as a cellular subspace of $\mathbb{R}^n$ then $X$ admits arbitrary fine open coverings whose nerves are homeomorphic to the $n$-dimensional cube $\mathbb{D}^n$; (2) Every $n$-dimensional cell-like compactum can be embedded into $(2n+1)$-dimensional …

Kernel testing compares cell states in single-cell data.

The issue of computing (co)homology generators of a cell complex is gaining a pivotal role in various branches of science. While this issue can be rigorously solved in polynomial time, it is still overly demanding for large scale problems. Drawing inspiration from low-frequency electrodynamics, this paper presents a ph…

We create a 3-skeleton for a symmetric group's classifying space.

Let A be an essential complex hyperplane arrangement in an n-dimensional complex vector space V. Let H denote the union of the hyperplanes, and M denote the complement to H in V. We develop the real-valued and circle-valued Morse theory for M and prove, in particular, that M has the homotopy type of a space obtained fr…

This study reviews and evaluates clustering methods for single-cell RNA-seq data.

Cell detection and cell type classification from biomedical images play an important role for high-throughput imaging and various clinical application. While classification of single cell sample can be performed with standard computer vision and machine learning methods, analysis of multi-label samples (region containi…

Forest Fire Clustering discovers cell types from single-cell data.

Proposes CCCVAE for better single-cell clustering with cell-cell communication.

Matching cells over time has long been the most difficult step in cell tracking. In this paper, we approach this problem by recasting it as a classification problem. We construct a feature set for each cell, and compute a feature difference vector between a cell in the current frame and a cell in a previous frame. Then…

Improved GPLVM model for single-cell RNA-seq data.

The study identifies all possible vector field structures on specific 2D shapes.

Study configuration spaces of punctured spaces, focusing on homology and group actions.

New model identifies cell-specific genes for cancer prognosis.

MarkerMap selects key genes for cell type analysis in single-cell RNA-seq.

Proposes CXNs for neural network computations on cell complexes.

New metric scores perturbations across populations, not cells, improving model comparison.

Cataloging the neuronal cell types that comprise circuitry of individual brain regions is a major goal of modern neuroscience and the BRAIN initiative. Single-cell RNA sequencing can now be used to measure the gene expression profiles of individual neurons and to categorize neurons based on their gene expression profil…

The process of morphogenesis, which can be defined as an evolution of the form of an organism, is one of the most intriguing mysteries in the life sciences. It is clear, that gene expression patterns cannot explain the development of the precise geometry of an organism and its parts in space. Here, we suggest a set of …

Hippocampal dentate granule cells are among the few neuronal cell types generated throughout adult life in mammals. In the normal brain, new granule cells are generated from progenitors in the subgranular zone and integrate in a typical fashion. During the development of epilepsy, granule cell integration is profoundly…

The kth finite subset space of a topological space X is the space exp_k X of non-empty finite subsets of X of size at most k, topologised as a quotient of X^k. The construction is a homotopy functor and may be regarded as a union of configuration spaces of distinct unordered points in X. We show that the finite subset …

NESS improves neighbor embedding for smooth cell-state transitions in single-cell data.

New method enhances graph neural networks using contractions and hourglass persistence.

We extend cell decomposition to moduli space of convex projective structures.