Graph Posterior Network improves uncertainty estimation for node classification in interdependent graphs.
problem Uncertainty quantification for non-independent node-level predictions in graphs.
method Derives axioms for expected predictive uncertainty, proposes Graph Posterior Network (GPN) which performs Bayesian posterior updates.
result GPN outperforms existing approaches for uncertainty estimation in semi-supervised node classification.
ABI adapts to graph data for fast, scalable inference.
problem Challenges in inference on graph-structured data.
method Amortized Bayesian Inference (ABI) framework for graph data.
result ABI successfully addresses challenges in graph data inference.
CUQ-GNN adapts uncertainty quantification for graph data, improving on GPN.
problem Defining meaningful uncertainty on graph data with domain-specific characteristics.
method Combines Graph Neural Networks with Posterior Networks using Normalizing Flows.
result CUQ-GNN produces more flexible and effective uncertainty estimates.
Bayesian graph learning improves graph representation accuracy.
problem Inaccurate graph construction from noisy data.
method Non-parametric Bayesian graph model for posterior inference of graph adjacency matrices.
result Model scales well to large graphs and improves node classification, link prediction, and recommendation tasks.
Neighborhood sampling affects graph neural network training outcomes.
problem Understanding the impact of neighborhood sampling on graph neural network training.
method Theoretical analysis using neural tangent kernels and Gaussian processes.
result Posterior covariance differs for different neighborhood sampling approaches, indicating no dominant approach.
A new method infers graph structure and parameters using a single generative flow network.
problem Bayesian Network structure and parameter inference from data.
method Single GFlowNet with two-phase sampling: DAG generation followed by parameter assignment.
result Accurate approximation of joint posterior distribution over graph structure and parameters.
GraphPPD models graph-level uncertainty using GNN embeddings.
problem Capturing uncertainty in graph-level predictions.
method Variational modelling for posterior predictive distribution.
result Effective uncertainty-aware predictions on graph-level tasks.
Bayesian models for networks are often misspecified, leading to overconfident inference.
problem Real-world networks violate assumptions of geometry and link function in latent space models.
method Proposes a generalized posterior framework for random geometric graphs, using Link-Sequential R-SafeBayes to adaptively tune posterior regularization.
result Improved calibration and better link prediction performance demonstrated on synthetic and real-world networks.
The paper analyzes distributed Bayesian inference and its Frequentist guarantees.
problem Analyzing large decentralized datasets with distributed Bayesian inference.
method Establishes Frequentist properties for distributed (non-)Bayesian inference.
result Distributed Bayesian inference retains parametric efficiency and enhances robustness.
New method handles structural uncertainty in graphs better than existing models.
problem Handling heterophily and structural noise in semi-supervised learning on graphs.
method Sparse signed message passing network that models a posterior distribution over signed adjacency matrices.
result Our method outperforms strong baseline models on heterophilic benchmarks under both synthetic and real-world structural noise.
BiDAG R package learns and samples Bayesian network structures efficiently.
problem Efficiently learning and sampling Bayesian network structures.
method Hybrid approach combining PC algorithm, iterative order MCMC, and partition MCMC.
result BiDAG can handle both discrete and continuous data.
DiBS learns Bayesian network structure and parameters efficiently.
problem Bayesian structure learning with uncertainty reasoning.
method Differentiable framework for continuous latent graph representation, agnostic to local conditional distributions.
result Significantly outperforms related approaches in posterior inference.
Bayesian network structure learning is often performed in a Bayesian setting, evaluating candidate structures using their posterior probabilities for a given data set. Score-based algorithms then use those posterior probabilities as an objective function and return the maximum a posteriori network as the learned model.…
Improved community detection in graphs with probabilistic models.
problem Lack of probabilistic formulation and fixed number of communities in GNN-based methods.
method Combines GNNs with amortized clustering for variable numbers of clusters.
result Improved performance on synthetic and real datasets compared to previous methods.
Paper introduces HGSL for heterogeneous graphs, improving edge type and weight recovery.
problem Learning structure in heterogeneous graphs with multiple node and edge types.
method Proposes H2MN model for DGPs and derives alternating optimization method.
result Demonstrates superior performance on synthetic and real-world datasets.
Bayesian network structure learning is often performed in a Bayesian setting, by evaluating candidate structures using their posterior probabilities for a given data set. Score-based algorithms then use those posterior probabilities as an objective function and return the maximum a posteriori network as the learned mod…
We propose a framework that lifts the capabilities of graph convolutional networks (GCNs) to scenarios where no input graph is given and increases their robustness to adversarial attacks. We formulate a joint probabilistic model that considers a prior distribution over graphs along with a GCN-based likelihood and devel…
New MCMC methods improve efficiency for large network inference.
problem Efficiency of Metropolis within Gibbs for large networks.
method Combination of split Hamiltonian Monte Carlo and Firefly Monte Carlo.
result New methods outperform Metropolis within Gibbs on synthetic and real networks.
We present a new Markov chain Monte Carlo method for estimating posterior probabilities of structural features in Bayesian networks. The method draws samples from the posterior distribution of partial orders on the nodes; for each sampled partial order, the conditional probabilities of interest are computed exactly. We…
Bayesian method learns network structure from Gaussian process priors.
problem Computational infeasibility of Bayesian structure learning in GPNs.
method Monte Carlo and MCMC methods for sampling network structures.
result Method outperforms state-of-the-art algorithms in recovering network structure.
Bayesian structure learning improved using GFlowNets.
problem Inferring Bayesian network structure from data.
method Using Generative Flow Networks (GFlowNets) for approximating posterior DAG distributions.
result DAG-GFlowNet provides an accurate approximation of the posterior over DAGs.
NPE improves scalability and efficiency for ERGMs.
problem Scalability and efficiency issues in Bayesian ERGM estimation.
method Neural posterior estimation (NPE) for ERGMs using neural network density estimation.
result NPE provides more efficient and scalable inference for ERGMs.
Bayesian meta-learning on relation graphs improves few-shot relation extraction.
problem Predicting relations in sentences with limited labeled examples.
method Bayesian meta-learning on a global relation graph, using graph neural networks and Langevin dynamics.
result Framework effectively learns and generalizes to new relations.
This paper studies semi-supervised object classification in relational data, which is a fundamental problem in relational data modeling. The problem has been extensively studied in the literature of both statistical relational learning (e.g. relational Markov networks) and graph neural networks (e.g. graph convolutiona…
STAG injects noise into graph neural networks to improve performance.
problem Graph neural networks suffer from over-smoothing and limited discrimination.
method Introduces a stochastic aggregation framework (STAG) with adaptive noise injection.
result STAG models correct both over-smoothing and discrimination issues.
Graph convolutional neural networks (GCNN) have been successfully applied to many different graph based learning tasks including node and graph classification, matrix completion, and learning of node embeddings. Despite their impressive performance, the techniques have a limited capability to incorporate the uncertaint…
Bayesian inference of discrete component states in civil infrastructures using PGMs and GNNs.
problem Inferring discrete states of civil infrastructure components from measurable responses is an ill-posed inverse problem.
method The study proposes a novel Bayesian inversion paradigm based on Probabilistic Graphical Models (PGMs) and Graph Neural Networks (GNNs). PGMs are used to model the problem, with parameters learned from data and structural topology prior. Inference is accomplished by GNNs, and a graph property-based training strategy is developed.
result The proposed framework effectively solves the challenges of inferring the posterior PDF for discrete variables in high-dimensional problems.
Bayesian methods estimate regression functions on submanifolds using graph Laplacian eigenbasis.
problem Estimating regression functions on unknown smooth submanifolds.
method Random geometric graph structure, Bayesian priors based on random basis expansion in graph Laplacian eigenbasis.
result Posterior contraction rates are minimax optimal for any positive smoothness index.
Estimates marginal independence structure of Bayesian networks from data.
problem Learning the marginal independence structure of Bayesian networks from observational data.
method Using Gröbner basis and MCMC method (GrUES) to connect and recover the true structure.
result GrUES recovers the true marginal independence structure at a higher rate than simple independence tests.
We propose a novel statistical model for sparse networks with overlapping community structure. The model is based on representing the graph as an exchangeable point process, and naturally generalizes existing probabilistic models with overlapping block-structure to the sparse regime. Our construction builds on vectors …
Graphical model learning and inference are often performed using Bayesian techniques. In particular, learning is usually performed in two separate steps. First, the graph structure is learned from the data; then the parameters of the model are estimated conditional on that graph structure. While the probability distrib…
We consider a family of problems that are concerned about making predictions for the majority of unlabeled, graph-structured data samples based on a small proportion of labeled samples. Relational information among the data samples, often encoded in the graph/network structure, is shown to be helpful for these semi-sup…
GC-Flow uses graph flows for better clustering than traditional GCNs.
problem Traditional GCNs miss useful clustering information.
method Designing normalizing flows to replace GCN layers, creating a generative model.
result GC-Flow produces well-separated clusters while maintaining predictive power.
Algorithm estimates graph structure with prior information and Langevin diffusion.
problem Support estimation of partially known Gaussian graphical models.
method Proposes an algorithm using annealed Langevin diffusion and graph neural networks to estimate the posterior distribution of the graph.
result Demonstrates the benefits of the approach through numerical experiments.
Paper improves robustness of GNNs against adversarial attacks.
problem Understanding robust generalization of GNNs in adversarial settings.
method Develops a sensitivity-aware PAC-Bayesian framework for MPGNNs.
result Derives tighter robust generalization bounds for MPGNNs.
Develops scalable autoencoder for document networks.
problem Sparse and skewed latent node representations in document relational networks.
method Combines graph Poisson factor analysis with Weibull-based graph inference networks.
result Extracts high-quality hierarchical latent document representations.
Recently, techniques for applying convolutional neural networks to graph-structured data have emerged. Graph convolutional neural networks (GCNNs) have been used to address node and graph classification and matrix completion. Although the performance has been impressive, the current implementations have limited capabil…
In this paper we investigate the geometry of the likelihood of the unknown parameters in a simple class of Bayesian directed graphs with hidden variables. This enables us, before any numerical algorithms are employed, to obtain certain insights in the nature of the unidentifiability inherent in such models, the way pos…
Bayesian method learns graph structures from Gaussian data efficiently.
problem Scalability issue in Bayesian Gaussian graphical model inference.
method Marginal pseudo-likelihood, birth-death and reversible jump MCMC algorithms.
result Efficient graph structure learning for large graphs with over 1,000 nodes.
Graph-based kernels improve GP performance on graph data.
problem Improving Gaussian process performance on graph-structured data.
method Introduced graph neural network-inspired kernels into Gaussian processes.
result Graph convolutional networks are equivalent to certain GP kernels when infinitely wide.
The paper improves uncertainty quantification for node classification using distance-based regularization.
problem Uncertainty in deep learning models, especially for node classification tasks.
method Graph posterior networks (GPNs) with UCE loss function, followed by a distance-based regularization.
result The proposed distance-based regularization outperforms state-of-the-art methods in OOD detection and misclassification detection.
Improved error correction using neural networks and belief propagation.
problem Inference in factor graphs with loops or poor approximations.
method Hybrid model combining FG-GNN and belief propagation.
result Hybrid model outperforms belief propagation in error correction tasks.
CGRL improves graph neural networks' OOD generalization by blocking spurious correlations.
problem Graph Neural Networks struggle with out-of-distribution data due to learning spurious correlations.
method Formulates a causal graph, uses backdoor adjustment, and introduces a loss replacement strategy.
result Significantly improves OOD generalization of GNNs, stabilizing mutual information learning.
Inference for GP models with non-Gaussian noises is computationally expensive when dealing with large datasets. Many recent inference methods approximate the posterior distribution with a simpler distribution defined on a small number of inducing points. The inference is accurate only when data points have strong corre…
Statistical network modeling has focused on representing the graph as a discrete structure, namely the adjacency matrix, and considering the exchangeability of this array. In such cases, the Aldous-Hoover representation theorem (Aldous, 1981;Hoover, 1979} applies and informs us that the graph is necessarily either dens…
Variational Causal Networks approximate Bayesian inference over causal structures.
problem Quantifying uncertainty in causal structure inference from finite data.
method Parametric variational family over DAGs, using Evidence Lower Bound (ELBO) for tractable learning.
result Approximation of the true posterior over DAGs is demonstrated to be good.
Proposes a new CBO method without known causal graphs.
problem Optimizing outcomes with unknown causal graphs.
method New CBO method focusing on direct causal parents, learning Bayesian posterior over them.
result Empirical validation and competitive performance with GP approximation.
Improved phylogenetic tree reconstruction using flexible branch length distributions.
problem Inefficient Markov chain Monte Carlo methods for large sequence datasets.
method Variational Bayesian phylogenetic inference with semi-implicit branch length distributions.
result Proposed method improves marginal likelihood estimation and branch length posterior approximation.