Graph Convolutional Neural Networks (Graph CNNs) are generalizations of classical CNNs to handle graph data such as molecular data, point could and social networks. Current filters in graph CNNs are built for fixed and shared graph structure. However, for most real data, the graph structures varies in both size and con…
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48 results for “graph data structure”
GraphToken encodes structured data for LLMs, improving graph reasoning tasks.
problem Efficiently encoding structured data for large language models.
method GraphToken learns an encoding function to extend prompts with explicit structured information.
result Significant improvements across node, edge, and graph-level tasks on the GraphQA benchmark.
Graph learning from data represents a canonical problem that has received substantial attention in the literature. However, insufficient work has been done in incorporating prior structural knowledge onto the learning of underlying graphical models from data. Learning a graph with a specific structure is essential for …
Paper introduces HGSL for heterogeneous graphs, improving edge type and weight recovery.
problem Learning structure in heterogeneous graphs with multiple node and edge types.
method Proposes H2MN model for DGPs and derives alternating optimization method.
result Demonstrates superior performance on synthetic and real-world datasets.
Study breaks down graphs into structural and featural components for task-agnostic data valuation.
problem Lack of methods to assess the value of graphs in data marketplaces.
method Introduces blind message passing framework to evaluate graphs without specific task metrics.
result Demonstrates effectiveness in capturing structural disparities, relevance, and diversity of seller data for buyers.
Graph data augmentation improves GNN performance in node classification.
problem Improving generalizability of graph neural networks (GNNs) in semi-supervised node classification.
method Introduces GAug framework for graph data augmentation using neural edge predictors.
result GAug framework improves GNN-based node classification performance across various architectures and datasets.
A new method generates graphs with hierarchical structures.
problem Generating graphs with natural hierarchical structures.
method Recursively generates community structures at multiple resolutions, parallel generation of all sub-structures.
result Improves generative performance on multiple graph datasets.
Proposes HypCSE for enhanced hierarchical clustering.
problem Challenges in existing hierarchical clustering methods.
method Hyperbolic Continuous Structural Entropy (HypCSE) neural networks.
result Superior performance on seven datasets.
Numerous pattern recognition applications can be formed as learning from graph-structured data, including social network, protein-interaction network, the world wide web data, knowledge graph, etc. While convolutional neural network (CNN) facilitates great advances in gridded image/video understanding tasks, very limit…
A new model learns graph structures from data.
problem Learning graph topologies from data.
method Proposes a learning to optimise (L2O) approach to learn graph structures from node data.
result The proposed model learns graph structures more efficiently than classic iterative algorithms.
Structure inference is an important task for network data processing and analysis in data science. In recent years, quite a few approaches have been developed to learn the graph structure underlying a set of observations captured in a data space. Although real-world data is often acquired in settings where relationship…
A new metric compares true and learned causal graphs considering data and graph structure.
problem Comparing true and learned causal graphs accurately.
method Continuous Structural Intervention Distance (CSID) using conditional mean embeddings and maximum mean discrepancy.
result Validated the CSID with synthetic data, showing its effectiveness in comparing causal graphs.
As a new approach to train generative models, \emph{generative adversarial networks} (GANs) have achieved considerable success in image generation. This framework has also recently been applied to data with graph structures. We propose labeled-graph generative adversarial networks (LGGAN) to train deep generative model…
Graphs are fundamental mathematical structures used in various fields to represent data, signals and processes. In this paper, we propose a novel framework for learning/estimating graphs from data. The proposed framework includes (i) formulation of various graph learning problems, (ii) their probabilistic interpretatio…
Graph embedding is an effective method to represent graph data in a low dimensional space for graph analytics. Most existing embedding algorithms typically focus on preserving the topological structure or minimizing the reconstruction errors of graph data, but they have mostly ignored the data distribution of the laten…
Neural network learns causal graph structure from data.
problem Inferring causal graph structure from observational and interventional data.
method Supervised training of a neural network on synthetic graphs.
result Learned model generalizes to new graphs, robust to distribution shifts, and outperforms existing methods.
Suffering from the multi-view data diversity and complexity for semi-supervised classification, most of existing graph convolutional networks focus on the networks architecture construction or the salient graph structure preservation, and ignore the the complete graph structure for semi-supervised classification contri…
Graph Mixture Density Networks model multimodal data on graphs.
problem Challenging conditional density estimation problems with structured data.
method Combining mixture models and graph representation learning.
result Significant improvement in likelihood of epidemic outcomes.
A new graph-based approach for estimating complex data with manifold structure.
problem Regression of large-scale, complex data with underlying geometric structure and noises.
method Constructing a skeleton graph to capture geometric structure, defining metrics, and applying nonparametric regression.
result Statistical guarantees and effectiveness demonstrated through simulations and real data examples.
Auto-encoders have emerged as a successful framework for unsupervised learning. However, conventional auto-encoders are incapable of utilizing explicit relations in structured data. To take advantage of relations in graph-structured data, several graph auto-encoders have recently been proposed, but they neglect to reco…
Graph Information Bottleneck (GIB) optimizes graph representations for robustness against adversarial attacks.
problem Challenges in learning graph representations due to structure and feature information.
method GIB is an information-theoretic principle that balances expressiveness and robustness by maximizing mutual information between representation and target, while constraining mutual information with input data.
result GIB-based models are more robust to adversarial attacks, achieving up to 31% improvement.
DynDepNet learns dynamic brain graphs from fMRI data for better prediction performance.
problem Static brain graphs from fMRI data lead to poor GNN performance.
method Dynamic Graph Structure Learning for time-varying brain connectivity.
result DynDepNet achieves state-of-the-art sex classification accuracy on real-world fMRI data.
Pointer Graph Networksstat.ML
PGNs dynamically infer and use graph structures to improve model generalization.
problem Static graph structures inferred by machine learning practitioners are often suboptimal for tasks.
method PGNs augment graphs with dynamically inferred pointers for improved model generalization.
result PGNs outperform unrestricted GNNs and Deep Sets on dynamic graph connectivity tasks.
Proposes a model combining graph networks and variational Bayes for graph data.
problem Probabilistic modeling of graph structured data.
method Combines graph networks and variational Bayes for probabilistic modeling of graph data.
result Demonstrates effectiveness on wind farm monitoring and Gaussian Process data.
This paper introduces Graph Convolutional Recurrent Network (GCRN), a deep learning model able to predict structured sequences of data. Precisely, GCRN is a generalization of classical recurrent neural networks (RNN) to data structured by an arbitrary graph. Such structured sequences can represent series of frames in v…
The paper defines conditions for learning causal graphs from data with unobserved variables.
problem Learning causal graphs from data with unobserved variables.
method Formalizes constraint-based structure learning algorithms under conditions and assumptions.
result Natural family of algorithms output Markov equivalent graphs to the causal graph under faithfulness assumption.
This paper presents a novel method for structural data recognition using a large number of graph models. In general, prevalent methods for structural data recognition have two shortcomings: 1) Only a single model is used to capture structural variation. 2) Naive recognition methods are used, such as the nearest neighbo…
Data Augmentation View on Graph Convolutional Network and the Proposal of Monte Carlo Graph Learningcs.LG
Introduces data augmentation for graph convolutional networks, proposing Monte Carlo Graph Learning.
problem Lack of transparency in graph convolutional networks.
method Data augmentation through graph structure, training traditional classifiers on expanded training set.
result MCGL shows better tolerance to graph structure noise than GCN on noisy graphs.
Graphs are fundamental data structures which concisely capture the relational structure in many important real-world domains, such as knowledge graphs, physical and social interactions, language, and chemistry. Here we introduce a powerful new approach for learning generative models over graphs, which can capture both …
Processes such as disease propagation and information diffusion often spread over some latent network structure which must be learned from observation. Given a set of unlabeled training examples representing occurrences of an event type of interest (e.g., a disease outbreak), our goal is to learn a graph structure that…
e-GGPs learn graph vertex transitions over time.
problem Static graph Gaussian Processes cannot handle dynamic graph structures.
method Proposes e-GGPs with a transition function and neighbourhood kernel.
result e-GGPs outperform static GGPs on time-series regression.
We present GraphTSNE, a novel visualization technique for graph-structured data based on t-SNE. The growing interest in graph-structured data increases the importance of gaining human insight into such datasets by means of visualization. Among the most popular visualization techniques, classical t-SNE is not suitable o…
Graph convolutional kernel networks generalize CNNs to graph data.
problem Representing graph-structured data for machine learning.
method Convolutional kernel networks applied to graph data.
result Competitive performance on graph classification benchmarks.
New metrics improve uncertainty estimation on graph data.
problem Current GNNs focus only on nodewise scores, limiting uncertainty estimation.
method Proposed edgewise metrics for uncertainty estimation on graphs.
result GNN models with structured prediction perform better in uncertainty estimation.
Generative Adversarial Graph Neural Network (Sig-Graph GAN) models financial time series data.
problem Challenges in generating synthetic data for non-stationary financial time series.
method Integrates time-series signature, LSTM, and GNNs with visibility graph algorithm.
result Sig-Graph GAN outperforms baseline methods in replicating time series data distributions.
Learning a graph with a specific structure is essential for interpretability and identification of the relationships among data. It is well known that structured graph learning from observed samples is an NP-hard combinatorial problem. In this paper, we first show that for a set of important graph families it is possib…
Graph data widely exist in many high-impact applications. Inspired by the success of deep learning in grid-structured data, graph neural network models have been proposed to learn powerful node-level or graph-level representation. However, most of the existing graph neural networks suffer from the following limitations…
Graph signals offer a very generic and natural representation for data that lives on networks or irregular structures. The actual data structure is however often unknown a priori but can sometimes be estimated from the knowledge of the application domain. If this is not possible, the data structure has to be inferred f…
Benchmark data sets are an indispensable ingredient of the evaluation of graph-based machine learning methods. We release a new data set, compiled from International Planning Competitions (IPC), for benchmarking graph classification, regression, and related tasks. Apart from the graph construction (based on AI planning…
Bi-GNN models drug interactions using a bi-level graph approach.
problem Predicting drug-drug interactions using machine learning.
method Bi-level graph neural networks that consider both interaction graph and representation graphs of drugs.
result Bi-GNN model improves DDI prediction accuracy compared to existing methods.
Many scientific datasets are of high dimension, and the analysis usually requires visual manipulation by retaining the most important structures of data. Principal curve is a widely used approach for this purpose. However, many existing methods work only for data with structures that are not self-intersected, which is …
Adaptive graph auto-encoder improves general data clustering.
problem Extending graph convolution networks to general clustering tasks.
method Adaptive graph construction based on generative perspective, novel decoder design.
result Model performs well in weighted graph scenarios.
A new method for graph-structured data improves transformer performance by incorporating topology.
problem Improving transformer performance on graph-structured data.
method Parameterizing topological masks as a learnable function of a weighted adjacency matrix, approximated with graph random features.
result Efficient masking algorithms provide strong performance gains for tasks on image and point cloud data.
Combinatorial and algebraic perspectives on the marginal independence structure of Bayesian networksstat.ME
Estimates marginal independence structure of Bayesian networks from data.
problem Learning the marginal independence structure of Bayesian networks from observational data.
method Using Gröbner basis and MCMC method (GrUES) to connect and recover the true structure.
result GrUES recovers the true marginal independence structure at a higher rate than simple independence tests.
A guide to using low-pass graph filters for network data.
problem Understanding and processing graph data with low-pass filters.
method Definition and application of low-pass graph filters to graph data.
result Low-pass filters effectively retain lower frequency graph data contents.
Generating graph structures is a challenging problem due to the diverse representations and complex dependencies among nodes. In this paper, we introduce Graph Variational Recurrent Neural Network (GraphVRNN), a probabilistic autoregressive model for graph generation. Through modeling the latent variables of graph data…
We study the effect of structural variation in graph data on the predictive performance of graph kernels. To this end, we introduce a novel, noise-robust adaptation of the GraphHopper kernel and validate it on benchmark data, obtaining modestly improved predictive performance on a range of datasets. Next, we investigat…
Graph neural networks (GNNs) are an emerging model for learning graph embeddings and making predictions on graph structured data. However, robustness of graph neural networks is not yet well-understood. In this work, we focus on node structural identity predictions, where a representative GNN model is able to achieve n…