Deep learning models outperform MICE in large survey imputation but with hyperparameter tuning.
problem Comparing deep learning and MICE for missing data imputation in large surveys.
method Extensive simulation studies comparing four machine learning-based MI methods: MICE with classification trees, MICE with random forests, generative adversarial imputation networks, and multiple imputation using denoising autoencoders.
result MICE with classification trees consistently outperforms deep learning methods in terms of bias, mean squared error, and coverage.
A new method for time series imputation that estimates uncertainty.
problem Substantial missing values in time series data.
method Quantile Sub-Ensembles: ensembles of quantile-regression-based task networks.
result Produces accurate and reliable imputations with computational efficiency.
This work addresses missing data imputation for MNAR scenarios with identifiable deep generative models.
problem Missing data with complex missingness mechanisms (MNAR) leading to biased imputation results.
method Systematic analysis and proposal of an identifiable deep generative model.
result Proposed model provides identifiability guarantees under mild assumptions for various MNAR mechanisms.
Missing value imputation is a fundamental problem in spatiotemporal modeling, from motion tracking to the dynamics of physical systems. Deep autoregressive models suffer from error propagation which becomes catastrophic for imputing long-range sequences. In this paper, we take a non-autoregressive approach and propose …
Autoencoder improves imputation across various missing data types.
problem Efficiently impute missing data in diverse datasets.
method Developed a deep autoencoder framework for consistent training and imputation.
result Autoencoder outperformed state-of-the-art methods in all experiments.
A deep generative model improves imputation of MNAR data by treating missing and complete data equally.
problem Missing Not At Random (MNAR) data in analysis.
method A generative model-specific joint probability decomposition method (conjunction model) and a deep generative imputation model (GNR).
result GNR surpasses state-of-the-art MNAR baselines with significant margins in RMSE and better mask reconstruction.
VAEs struggle with missing data imputation, especially for extreme values.
problem Imputation of missing data in complex, non-linear relationships.
method Investigated variational autoencoders (VAEs) for multiple imputation and improved with β-VAEs.
result β-VAEs provide better uncertainty calibration and avoid false discoveries.
HyperImpute improves iterative imputation by automatically selecting models and hyperparameters.
problem Imputing missing values in datasets with variable model specifications.
method Generalized iterative imputation framework that adapts and configures models and hyperparameters automatically.
result Demonstrates superior imputation accuracy compared to benchmarks.
Paper proposes a new method for imputing missing biomedical data.
problem Missing values in biomedical data.
method Monte Carlo Dropout within Autoencoders.
result The method improves imputation error and predictive similarity.
New ANN method for imputing rounded zeros in compositional data.
problem Imputing missing values in compositional data with rounded zeros.
method Artificial Neural Networks (ANNs) for imputation of compositional data.
result ANNs are competitive or better than conventional methods for imputing rounded zeros.
Datasets with missing values are very common on industry applications, and they can have a negative impact on machine learning models. Recent studies introduced solutions to the problem of imputing missing values based on deep generative models. Previous experiments with Generative Adversarial Networks and Variational …
Bayes-CATSI uses variational Bayesian deep learning for medical time series data imputation.
problem Missing values in medical time series data.
method Bayes-CATSI integrates variational inference for uncertainty quantification and context-aware imputation.
result Bayes-CATSI outperforms CATSI by 9.57% in imputation performance.
Multivariate time series with missing values are common in areas such as healthcare and finance, and have grown in number and complexity over the years. This raises the question whether deep learning methodologies can outperform classical data imputation methods in this domain. However, naive applications of deep learn…
Emputation learns imputation models guided by missingness assumptions.
problem Learning imputation models for missing data given observed data.
method Guided by specific missingness assumptions, Emputation trains a deep generative model to learn the extrapolation distribution of missing variables.
result The population minimizer of the emputation risk recovers the target extrapolation distribution under various identification assumptions.
MADS improves time series imputation performance across real-world datasets.
problem Time series imputation challenges due to variability in data types.
method MADS uses SIRENs for high-fidelity signal reconstruction and a hypernetwork for generalization.
result MADS outperforms state-of-the-art methods on real-world datasets.
A new method uses deep Gaussian processes to handle missing values in irregularly sampled healthcare data.
problem Missing values and irregular sampling in healthcare data.
method Deep Gaussian process emulation with stochastic imputation.
result The method outperforms conventional imputation methods in clinical datasets.
PC-GAIN improves GAIN's imputation by incorporating category information.
problem Missing data in incomplete datasets.
method Pre-training with pseudo-labels and incorporating an auxiliary classifier into GAIN.
result Significantly improved imputation quality compared to GAIN.
New method for fMRI missing value imputation improves robustness.
problem High frequency of missing values in fMRI data.
method Spatial and time-dependent regularization with a novel recurrent layer.
result Improved robustness against state-of-the-art alternatives.
DRIO improves time series imputation by minimizing reconstruction error and distributional divergence.
problem Bias in imputation due to mismatch between observed and true data distributions.
method DRIO minimizes reconstruction error and worst-case divergence using Wasserstein ambiguity set.
result DRIO consistently provides robust imputation and improved forecasting.
CFMI improves missing data imputation across various data types and dimensions.
problem Imputing missing data in complex, high-dimensional datasets.
method Combines normalising flows, flow-matching, and shared conditional modelling.
result Outperforms traditional and modern imputation methods across multiple metrics.
Proposes a novel imputation network for clinical time series data.
problem Missing value imputation in clinical time series data with sparsity, irregularity, and high-dimensionality.
method Variational-recurrent imputation network that considers correlated features, temporal dynamics, and uncertainty.
result The proposed method outperformed state-of-the-art methods on real-world EHR datasets.
Lung segmentation from abnormal CXRs using data imputation.
problem Segmenting lungs from CXRs with high opacity caused by respiratory ailments.
method Modified CNN-based segmentation network with deep generative model for data imputation.
result The model can segment lungs from abnormal CXRs, extending to cases with extreme abnormalities.
UnmaskingTrees improves tabular data imputation and generation using gradient-boosted decision trees.
problem Traditional methods outperform advanced deep learning techniques on tabular data imputation benchmarks.
method UnmaskingTrees employs gradient-boosted decision trees to incrementally unmask features for imputation and generation.
result UnmaskingTrees outperforms state-of-the-art methods on tabular imputation and generation benchmarks.
IRTCI uses IRT for categorical imputation, outperforming other methods in various datasets.
problem Missing data in datasets limits model testing and statistical inference.
method Item Response Theory for Categorical Imputation (IRTCI) based on IRT.
result IRTCI outperformed kNN, MICE, and Datawig in various datasets.
Fed-MIWAE improves federated learning by imputing missing data.
problem Handling missing data in federated learning models.
method Federated version of MIWAE, a deep latent variable model for missing data imputation.
result Fed-MIWAE achieves imputation accuracy comparable to centralized methods in federated scenarios.
Deep latent variable models (DLVMs) combine the approximation abilities of deep neural networks and the statistical foundations of generative models. Variational methods are commonly used for inference; however, the exact likelihood of these models has been largely overlooked. The purpose of this work is to study the g…
MCFlow uses Monte Carlo sampling and flow models for imputing missing data.
problem Missing data in machine learning datasets.
method MCFlow combines normalizing flow and Monte Carlo sampling to iteratively update data imputation.
result MCFlow outperforms state-of-the-art methods in imputing data quality and semantic structure preservation.
Imputation-free method learns tabular data with missing values using transformer.
problem Machine learning on tabular data with missing values often leads to unreliable outcomes due to synthetic imputation.
method Incremental attention learning (IFIAL) using transformer with attention masks.
result IFIAL outperforms state-of-the-art methods in 17 diverse tabular data sets.
We consider the problem of handling missing data with deep latent variable models (DLVMs). First, we present a simple technique to train DLVMs when the training set contains missing-at-random data. Our approach, called MIWAE, is based on the importance-weighted autoencoder (IWAE), and maximises a potentially tight lowe…
Missing values widely exist in many real-world datasets, which hinders the performing of advanced data analytics. Properly filling these missing values is crucial but challenging, especially when the missing rate is high. Many approaches have been proposed for missing value imputation (MVI), but they are mostly heurist…
Missing data is a significant problem impacting all domains. State-of-the-art framework for minimizing missing data bias is multiple imputation, for which the choice of an imputation model remains nontrivial. We propose a multiple imputation model based on overcomplete deep denoising autoencoders. Our proposed model is…
A new algorithm for missing data imputation with low RMSE and explainability.
problem Missing data in various domains, especially in critical applications requiring low RMSE and explainability.
method DIMV algorithm that uses conditional distribution of features based on fully observed features.
result DIMV provides low RMSE, scalability, and explainability for imputed values.
DeepIFSAC uses attention mechanisms and contrastive learning to impute missing values in tabular data.
problem Missing values in tabular data, especially when high and not random.
method Row and column attention in a contrastive learning framework with CutMix data augmentation.
result Proposed method outperforms state-of-the-art methods for missing rates between 10% and 90% and various missing value types.
DNI recovers missing brain data from corrupted recordings.
problem Corrupted neural recordings from multielectrode systems.
method Deep Neural Imputation framework using autoencoders.
result DNI recovers both time series and frequency content from corrupted data.
New model handles missing data effectively in autoregressive models.
problem Handling missing data in autoregressive models.
method Reinterpret existing models through missing data lens, introduce principled framework for incomplete datasets, active information acquisition.
result MO-ARM consistently outperforms imputation baselines across real-world benchmarks.
A new method for training deep Gaussian processes using stochastic imputation.
problem Efficiently training deep Gaussian processes with varying regimes or sharp changes.
method Stochastic imputation to transform DGPs into linked GPs for efficient training.
result The method produces fast and analytically tractable predictions from DGP emulators.
DIVE learns video representations even with missing data.
problem Missing data in video sequences.
method Disentangled Imputed Video autoEncoder (DIVE) with missingness latent variable.
result DIVE outperforms state-of-the-art baselines in imputing and predicting missing video frames.
IB-GAN improves multivariate time series classification under imbalance.
problem Class imbalance in multivariate time series classification.
method Unified approach combining data augmentation and classification via GANs.
result Significant performance gains for under-observed classes.
IGANI uses iterative GANs to improve traffic data imputation.
problem Imputation of traffic data in the absence of sensor data.
method Iterative Generative Adversarial Networks (IGANI) for unsupervised learning.
result IGANI produces more accurate imputation results compared to previous methods.
A deep learning framework discovers causal relationships from incomplete data.
problem Discovering causal knowledge from incomplete observational data.
method Imputated Causal Learning (ICL) framework for iterative missing data imputation and causal structure discovery.
result ICL outperforms state-of-the-art methods in various missing data scenarios.
Spatial studies of transcriptome provide biologists with gene expression maps of heterogeneous and complex tissues. However, most experimental protocols for spatial transcriptomics suffer from the need to select beforehand a small fraction of genes to be quantified over the entire transcriptome. Standard single-cell RN…
A new imputation method MissARF uses adversarial random forests for fast and accurate missing value imputation.
problem Handling missing values in biostatistical analyses.
method Adversarial Random Forests (ARF) for density estimation and data synthesis.
result MissARF performs comparably to state-of-the-art methods in imputation quality and runtime.
Gaussian Processes improve missing value imputation in datasets.
problem Handling missing values in large datasets.
method Sparse Gaussian Processes combined with stochastic variational inference.
result MGP significantly outperforms other imputation methods.
This review synthesizes missing data imputation across diverse fields.
problem Missing data hinders analysis across various disciplines.
method Systematic review of imputation methods and their application across domains.
result Critical challenges and future directions identified.
HH-VAEM improves imputation and acquisition of missing data using hierarchical models and Hamiltonian Monte Carlo.
problem Imputation and acquisition of missing heterogeneous data.
method Hierarchical VAE model with Hamiltonian Monte Carlo and automatic hyper-parameter tuning.
result HH-VAEM outperforms existing methods in imputation and supervised learning tasks.
IFGAN uses feature-specific GANs for missing value imputation.
problem Missing value imputation in data mining.
method Feature-specific Generative Adversarial Networks (GAN).
result IFGAN outperforms state-of-the-art algorithms in various missing conditions.
GATGPT uses LLMs with graph attention for spatiotemporal data imputation.
problem Missing values in spatiotemporal data due to sensor malfunctions and data transmission errors.
method Integrates pre-trained large language models with graph attention mechanisms.
result GATGPT achieves comparable results to deep learning benchmarks on real-world datasets.
MTSCI uses diffusion models to impute multivariate time series data with consistency.
problem Imputation of missing values in multivariate time series data.
method MTSCI employs a contrastive complementary mask and mixup mechanism to ensure intra-consistency and inter-consistency.
result MTSCI achieves state-of-the-art performance on multivariate time series imputation tasks.