Learning knowledge representation is an increasingly important technology applicable in many domain-specific machine learning problems. We discuss the effectiveness of traditional Link Prediction or Knowledge Graph Completion evaluation protocol when embedding knowledge representation for categorised multi-relational d…
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48 results for “clinical domains”
Proposes a method to improve treatment policies in data-scarce clinical settings.
problem Improving treatment policies in data-scarce clinical settings with unobserved confounding.
method Uses a causal mechanism to model the underlying generative process and augments counterfactual trajectories with source domain priors.
result Significantly improves treatment policy performance in a simulated sepsis treatment task.
The hypothesis that computational models can be reliable enough to be adopted in prognosis and patient care is revolutionizing healthcare. Deep learning, in particular, has been a game changer in building predictive models, thus leading to community-wide data curation efforts. However, due to inherent variabilities in …
New deep learning method improves 4D Flow MRI super-resolution under domain shift.
problem Domain shift in low-resolution 4D Flow MRI data.
method Distributional deep learning framework for domain generalization.
result Framework significantly outperforms traditional methods in real data applications.
Deep learning for integrating diverse clinical measurements.
problem Combining data from different measurement instruments in longitudinal clinical registries.
method Domain adaptation using deep learning for mapping items from different instruments.
result Domain adaptation can recover latent trajectories even with limited data and misalignment.
Deep neural networks have shown promising results for various clinical prediction tasks. However, training deep networks such as those based on Recurrent Neural Networks (RNNs) requires large labeled data, significant hyper-parameter tuning effort and expertise, and high computational resources. In this work, we invest…
Convolutional neural network improves assertion detection in multi-label clinical text.
problem Detecting assertions in multi-label clinical text with rich descriptions.
method Developed a CNN architecture for multi-label scope detection.
result At least 12% improvement over state-of-the-art on multi-label clinical text.
Personalized Risk Scoring for Critical Care Patients using Mixtures of Gaussian Process Expertscs.LG
We develop a personalized real time risk scoring algorithm that provides timely and granular assessments for the clinical acuity of ward patients based on their (temporal) lab tests and vital signs. Heterogeneity of the patients population is captured via a hierarchical latent class model. The proposed algorithm aims t…
Automated extraction of concepts from patient clinical records is an essential facilitator of clinical research. For this reason, the 2010 i2b2/VA Natural Language Processing Challenges for Clinical Records introduced a concept extraction task aimed at identifying and classifying concepts into predefined categories (i.…
Febrile neutropenia (FN) has been associated with high mortality, especially among adults with cancer. Understanding the patient and provider level heterogeneity in FN hospital admissions has potential to inform personalized interventions focused on increasing survival of individuals with FN. We leverage machine learni…
C3T-Budget optimizes drug efficacy in dose-finding trials with budget and safety constraints.
problem Heterogeneous patient populations and budget constraints make dose-finding clinical trials challenging.
method Contextual constrained clinical trial algorithm that maximizes drug efficacy while learning subgroup responses.
result Demonstrates efficient budget usage and balanced learning-treatment trade-off in simulated trials.
Clinical notes are a rich source of information about patient state. However, using them to predict clinical events with machine learning models is challenging. They are very high dimensional, sparse and have complex structure. Furthermore, training data is often scarce because it is expensive to obtain reliable labels…
Framework combines HMM and MTGCN for spatiotemporal causal inference in clinical data.
problem Challenges in observing direct treatment effects in clinical domains.
method Integrates Hidden Markov Model and Multi Task and Multi Graph Convolutional Network for spatiotemporal data.
result Advances predictive causal inference by structurally adapting to spatiotemporal complexities.
The discovery of adversarial examples has raised concerns about the practical deployment of deep learning systems. In this paper, we demonstrate that adversarial examples are capable of manipulating deep learning systems across three clinical domains. For each of our representative medical deep learning classifiers, bo…
Improved 3D ECG feature attributions for clinical interpretation.
problem Lack of interpretability in deep learning models for 12-lead ECG analysis.
method Cross-modal mapping of feature attributions from 12-lead ECG models onto CineECG 3D space.
result Mapped feature attributions yield higher Dice scores than standard 12-lead attributions.
This work proposes a new algorithm for automated and simultaneous phenotyping of multiple co-occurring medical conditions, also referred as comorbidities, using clinical notes from the electronic health records (EHRs). A basic latent factor estimation technique of non-negative matrix factorization (NMF) is augmented wi…
ABC improves uncertainty quantification in LLMs for clinical diagnostics.
problem Overconfident and poorly calibrated estimates of LLMs in clinical domains.
method Approximate Bayesian Computation (ABC) for likelihood-free inference.
result Improves accuracy by up to 46.9%, reduces Brier scores by 74.4%, and enhances calibration.
Neural SDEs model suicide risk with compact state space constraints.
problem Modeling suicide risk with irregular, noisy, and partially observed data.
method Developed neural SDEs confined to compact state spaces, addressing domain constraints and numerical stability.
result Improved forecasts and optimization dynamics over standard models on EMA datasets.
AI generates a sequence of death causes from hospital records.
problem Accurate death reporting for vital statistics and policy formulation.
method Neural machine translation models to generate causal chains, incorporating medical domain knowledge.
result Achieved 16.04 BLEU score for generating accurate causal chains.
Dynamic memory prevents forgetting in continuous learning of medical images.
problem Catastrophic forgetting in machine learning models over time due to domain shifts.
method Dynamic memory to store and replay diverse training data subsets.
result Dynamic memory mitigates forgetting without knowing when shifts occur.
Develops a machine learning model to predict ALS progression and assistive device use.
problem Challenges in predicting clinically meaningful milestones in ALS.
method Integrates longitudinal ALSFRS-R trajectories with survival modeling.
result Generates individualized survival curves and predicts wheelchair-free survival.
The reliability of a deep learning model in clinical out-of-distribution MRI data: a multicohort studyphysics.med-ph
Deep learning (DL) methods have in recent years yielded impressive results in medical imaging, with the potential to function as clinical aid to radiologists. However, DL models in medical imaging are often trained on public research cohorts with images acquired with a single scanner or with strict protocol harmonizati…
Approach for biosensor condition detection using domain adaptation.
problem Limited clinical data for biosensor condition detection.
method Teacher-student adaptation of deep learning models.
result Significantly outperforms other methods on synthetic and real-world datasets.
New method forecasts values and timing in irregular time series.
problem Forecasting values and timing in sparse, irregularly sampled multivariate time series.
method Proposes a novel approach for forecasting values and timing in irregular time series.
result Successfully forecasts values and timing in irregular time series.
Electronic Health Records (EHRs) have been heavily used to predict various downstream clinical tasks such as readmission or mortality. One of the modalities in EHRs, clinical notes, has not been fully explored for these tasks due to its unstructured and inexplicable nature. Although recent advances in deep learning (DL…
Self-supervised learning improves ECG classification performance.
problem Label scarcity in clinical 12-lead ECG data.
method Adapted self-supervised methods to ECG domain, focusing on contrastive representations and latent forecasting.
result Contrastive predictive coding adaptation yields linear evaluation performance only 0.5% below supervised performance.
Performance evaluation of predictive AI models to support medical decisions: Overview and guidancecs.LG
The study evaluates AI model performance measures for medical use.
problem Selecting appropriate performance measures for AI models in medical practice.
method Assessed 32 performance measures across five domains for binary outcomes.
result 17 measures are both proper and reflect decision-analytic performance.
Deep learning based medical image diagnosis has shown great potential in clinical medicine. However, it often suffers two major difficulties in practice: 1) only limited labeled samples are available due to expensive annotation costs over medical images; 2) labeled images may contain considerable label noises (e.g., mi…
Survival analysis has been developed and applied in the number of areas including manufacturing, finance, economics and healthcare. In healthcare domain, usually clinical data are high-dimensional, sparse and complex and sometimes there exists few amount of time-to-event (labeled) instances. Therefore building an accur…
Framework for AI healthcare products from concept to market.
problem Failure of AI products to reach clinics despite promising potential.
method Decision-making framework for AI healthcare product development.
result Guides through a three-phase process to market launch of validated AI products.
Bayesian model enhances phenotype discovery in asthma EHRs.
problem Lack of interpretability in unsupervised learning phenotyping of EHR data.
method Operationalized a Bayesian latent class framework with clinical knowledge priors.
result Identified an asthma sub-phenotype with elevated eosinophil levels and allergy markers.
Bayesian approach models neurodegenerative diseases without clinical labels.
problem Personalized, predictive modeling of neurodegenerative diseases.
method Probabilistic programmed deep kernel learning combining Gaussian processes and neural networks.
result Surpasses deep learning in accuracy and timeliness of predicting neurodegeneration.
Machine Learning and Visualization in Clinical Decision Support: Current State and Future Directionscs.LG
Deep learning, an area of machine learning, is set to revolutionize patient care. But it is not yet part of standard of care, especially when it comes to individual patient care. In fact, it is unclear to what extent data-driven techniques are being used to support clinical decision making (CDS). Heretofore, there has …
In this paper, we propose a new feature selection method for unsupervised domain adaptation based on the emerging optimal transportation theory. We build upon a recent theoretical analysis of optimal transport in domain adaptation and show that it can directly suggest a feature selection procedure leveraging the shift …
Numeracy is the ability to understand and work with numbers. It is a necessary skill for composing and understanding documents in clinical, scientific, and other technical domains. In this paper, we explore different strategies for modelling numerals with language models, such as memorisation and digit-by-digit composi…
This study proposes an exercise fatigue detection model based on real-time clinical data which includes time domain analysis, frequency domain analysis, detrended fluctuation analysis, approximate entropy, and sample entropy. Furthermore, this study proposed a feature extraction method which is combined with an analyti…
FIGS improves prediction performance while maintaining interpretability, especially in medical domains.
problem Lack of interpretability in machine learning models, particularly in high-stakes domains like medicine.
method Generalizes CART algorithm to grow multiple trees in summation, combining logical rules with addition.
result FIGS achieves state-of-the-art prediction performance and derives interpretable clinical decision instruments (CDIs).
Flexible co-data learning improves clinical prediction models.
problem High-dimensional clinical data challenges prediction accuracy.
method Combining domain knowledge and external studies to estimate adaptive multi-group ridge penalties.
result Improves prediction performance and variable selection stability.
Despite continuing medical advances, the rate of newborn morbidity and mortality globally remains high, with over 6 million casualties every year. The prediction of pathologies affecting newborns based on their cry is thus of significant clinical interest, as it would facilitate the development of accessible, low-cost …
The paper predicts diseases using both clinical and genomics data.
problem Clinical predictions using genomics data are not common.
method Integrated clinical and genomics datasets, machine learning, Principal Component Analysis for feature selection.
result 73% accuracy in predicting 75 disease classes.
Study improves predictive models for ICU data across hospitals.
problem Degradation of predictive model performance in new hospitals.
method Anchor regression and anchor boosting for domain generalization.
result Anchor regularization enhances out-of-distribution performance.
Early recognition of risky trajectories during an Intensive Care Unit (ICU) stay is one of the key steps towards improving patient survival. Learning trajectories from physiological signals continuously measured during an ICU stay requires learning time-series features that are robust and discriminative across diverse …
Capturing sentence semantics plays a vital role in a range of text mining applications. Despite continuous efforts on the development of related datasets and models in the general domain, both datasets and models are limited in biomedical and clinical domains. The BioCreative/OHNLP organizers have made the first attemp…
This research improves uncertainty estimation for medical predictions, enhancing model trust and decision support.
problem Improving model uncertainty estimation for rare medical conditions.
method Developed and refined heuristics for selecting uncertainty estimation techniques, distinguishing them by clinical use-case. Also, compared ensembles vs. auto-encoders for detecting out-of-domain examples.
result Auto-encoders outperform ensembles in detecting out-of-domain examples, highlighting their importance for medical tabular data.
Effective modeling of electronic health records presents many challenges as they contain large amounts of irregularity most of which are due to the varying procedures and diagnosis a patient may have. Despite the recent progress in machine learning, unsupervised learning remains largely at open, especially in the healt…
Exponential growth in Electronic Healthcare Records (EHR) has resulted in new opportunities and urgent needs for discovery of meaningful data-driven representations and patterns of diseases in Computational Phenotyping research. Deep Learning models have shown superior performance for robust prediction in computational…
Clinical notes contain a large amount of clinically valuable information that is ignored in many clinical decision support systems due to the difficulty that comes with mining that information. Recent work has found success leveraging deep learning models for the prediction of clinical outcomes using clinical notes. Ho…
CLIP dataset helps extract action items from hospital discharge notes.
problem Lost action items in long discharge notes hinder information sharing.
method Created CLIP dataset of annotated discharge notes, used multi-aspect extractive summarization, trained models on pre-trained language models and context.
result Best models improved by incorporating context and pre-trained language models.