arXiv research

Improved phylogenetic tree reconstruction using flexible branch length distributions.

Improved phylogenetic inference with normalizing flows.

Improved phylogenetic inference using VBPI-Mixtures for tree topology and branch length.

Branching Flows generates sequences of varying lengths using binary trees.

Phylogenetic tree inference using deep DNA sequencing is reshaping our understanding of rapidly evolving systems, such as the within-host battle between viruses and the immune system. Densely sampled phylogenetic trees can contain special features, including "sampled ancestors" in which we sequence a genotype along wit…

A new variational method speeds up Bayesian phylogenetic inference.

We define sink marks for branched complexes and find conditions for them to determine a branched surface structure. These will be used to construct branched surfaces in knot and tangle complements. We will extend Delman's theorem and prove that a Montesinos knot $K$ of length at least 3 has a persistently laminar branc…

New partial solution to Hurwitz problem for surface branched covers.

We prove existence and a.e. regularity of an area minimizing soap film with a bound on energy spanning a given Jordan curve in R^3. The energy of a film is defined to be the sum of its surface area and the length of its singular branched set. The class of surfaces over which area is minimized includes images of disks, …

For a branched cover between two closed orientable surfaces, the Riemann-Hurwitz formula relates the Euler characteristics of the surfaces, the total degree of the cover, and the total length of the partitions of the degree given by the local degrees at the preimages of the branching points. A very old problem asks whe…

Cube edges curves minimize systole length.

We show that a closed, connected, oriented, Riemannian $n$-manifold, admitting a branched cover of bounded length distortion from $\mathbb R^n$, has a virtually Abelian fundamental group.

\noindent Given a Riemann surface $M$, the \emph{complexity} of a branched cover of $M$ to the Riemann sphere $S^2$, of degree $d$ and with branching set of cardinality $n \geq 3$, is defined as $d$ times the hyperbolic area of the complement of its branching set in $S^2$. A branched cover $p \colon M \to S^2$ of degre…

The study introduces hyperbolic angles in Lorentzian spaces and characterizes curvature bounds.

Stability of branched immersions with energy constraints.

The study investigates how branch points affect the shape and mechanics of hyperbolic surfaces.

Study on minimal surfaces with constraints on index and branching order.

Analytic convex bodies' Poincaré series extended holomorphically.

We propose the new Top-Dog-Index to quantify the historic deviation of the supply data of many small branches for a commodity group from sales data. On the one hand, the common parametric assumptions on the customer demand distribution in the literature could not at all be supported in our real-world data set. On the o…

Closed geodesic nets on surfaces have limited branch points

BSVGD improves sampling for multimodal distributions using branching.

We find a constructive bound for the word length of a generating set for the centralizer of an element of the Mapping Class Group. As a consequence, we show that it is algorithmically decidable whether two postcritically finite branched coverings of the sphere are Thurston equivalent.

This paper extends the work in [Suzuki, 1996] and presents an efficient depth-first branch-and-bound algorithm for learning Bayesian network structures, based on the minimum description length (MDL) principle, for a given (consistent) variable ordering. The algorithm exhaustively searches through all network structures…

We consider surface branch data with base surface the sphere, odd degree d, three branching points, and two partitions of d of the form (2,...,2,1) and (2,...,2,2h+1). If the third partition has length L, this datum satisfies the Riemann-Hurwitz necessary condition for realizability if h-L is odd and at least -1. For s…

Researchers create coordinates for hyperbolic surfaces, proving a magic formula.

Given a hyperbolic 3-manifold with torus boundary, we bound the change in volume under a Dehn filling where all slopes have length at least 2π. This result is applied to give explicit diagrammatic bounds on the volumes of many knots and links, as well as their Dehn fillings and branched covers. Finally, we use this res…

VCSMC improves efficiency in Bayesian phylogenetic inference.

New method for ancestral inference in branching processes with random environments.

Study length functions on various groups and prove homomorphisms to finite groups.

Study finds a limiting distribution for free path lengths on flat surfaces with circular obstacles.

We present the Integrated Size and Price Optimization Problem (ISPO) for a fashion discounter with many branches. Based on a two-stage stochastic programming model with recourse, we develop an exact algorithm and a production-compliant heuristic that produces small optimality gaps. In a field study we show that a distr…

Random square-tiled surfaces have normal genus distribution and cover all integer vectors.

Each free homotopy class of directed closed curves on a surface with boundary can be described by a cyclic reduced word in the generators of the fundamental group and their inverses. The word length is the number of letters of the cyclic word. If the surface has a hyperbolic metric with geodesic boundary, the geometric…

Study on length distribution of random multicurves on large genus surfaces converging to Poisson-Dirichlet distribution.

Study h-principles for non-integrable distributions on manifolds.

We view closed orientable 3-manifolds as covers of S^3 branched over hyperbolic links. For a p-fold cover M \to S^3, branched over a hyperbolic link L, we assign the complexity p Vol(S^3 minus L) (where Vol is the hyperbolic volume). We define an invariant of 3-manifolds, called the link volume and denoted LV, that ass…

New method identifies causal structure in count data using cumulants and path analysis.

We present the first treatment of the arc length of the Gaussian Process (GP) with more than a single output dimension. GPs are commonly used for tasks such as trajectory modelling, where path length is a crucial quantity of interest. Previously, only paths in one dimension have been considered, with no theoretical con…

Analyzes geodesic lengths in sparse networks, deriving a distribution.

Ex ante forecast outcomes should be interpreted as counterfactuals (potential histories), with errors as the spread between outcomes. Reapplying measurements of uncertainty about the estimation errors of the estimation errors of an estimation leads to branching counterfactuals. Such recursions of epistemic uncertainty …

Rational maps structure theorem with geometric decomposition and realizability proof.

The paper extends completeness notions to low-regularity spacetimes.

Study finds saddle connections on random surfaces follow Poisson distribution.

This work studies the chord length distribution, in the case where both ends lie on a $N$-dimensional hypersphere ($N \geq 2$). Actually, after connecting this distribution to the recently estimated surface of a hyperspherical cap \cite{SLi11}, closed-form expressions of both the probability density function and the cu…

We compute exact values respectively bounds of "distances" - in the sense of (transforms of) power divergences and relative entropy - between two discrete-time Galton-Watson branching processes with immigration GWI for which the offspring as well as the immigration is arbitrarily Poisson-distributed (leading to arbitra…

This research proves guarantees on sequence models' generalization to longer and novel sequences.

We investigate the distribution of lengths obtained by intersecting a random geodesic with a geodesic lamination. We give an explicit formula for the distribution for the case of a maximal lamination and show that the distribution is independent of the surface and lamination. We also show how the moments of the distrib…

Study on moduli spaces of branched projective structures on surfaces.