A new encoding framework predicts brain activity from visual stimuli and intrinsic brain connections.
problem Traditional encoding models ignore brain inner states, limiting their performance in natural image identification.
method Proposes a novel encoding framework combining external stimuli and brain inner states, using a forward encoding model and an inner state model.
result The framework achieves better performance on natural image identification from fMRI responses than traditional models.
fMRI semantic category understanding using linguistic encoding models attempt to learn a forward mapping that relates stimuli to the corresponding brain activation. Classical encoding models use linear multi-variate methods to predict the brain activation (all voxels) given the stimulus. However, these methods essentia…
Develops a new method to analyze brain networks for cognitive traits.
problem Challenges in summarizing and relating brain connectomes to human traits.
method Graph Auto-Encoding (GATE) model using deep learning.
result GATE improves prediction accuracy and efficiency over existing methods.
Stochastic encoding improves gender classification of brain networks from UK Biobank data.
problem Complexity and bias in interpreting deep learning models of brain connectivity.
method Stochastic encoding in ensemble of CNNs, multivariate balancing algorithm.
result AUROC of 0.8459, with resting-state data more accurate than task data.
Brain networks in fMRI are typically identified using spatial independent component analysis (ICA), yet mathematical constraints such as sparse coding and positivity both provide alternate biologically-plausible frameworks for generating brain networks. Non-negative Matrix Factorization (NMF) would suppress negative BO…
The paper proposes a new model to capture specialized brain regions using mixture of regression experts.
problem Learning a forward mapping that relates stimuli to brain activation assumes all regions respond similarly, ignoring brain specialization.
method Clustering brain regions, learning different linear regression models for each cluster, using a mixture of linear experts.
result The proposed model predicts brain activation more accurately than conventional models.
SiamJEPA uses Siamese student encoders to improve JEPA-based representation learning.
problem Improving self-supervised representation learning in JEPA models.
method Proposes SiamJEPA with masked Siamese student encoders and EMA teacher network.
result Siamese student encoders improve representation separability and learning speed.
Generative model predicts multiple brain graphs from one, preserving topology.
problem Predicting multiple brain graphs from a single one, preserving topology.
method MultiGraphGAN architecture, graph adversarial auto-encoder, cluster-specific decoders, topological loss.
result Significantly outperformed variants in multi-view brain graph generation.
DBGDGM models dynamic brain graphs for better understanding brain function.
problem Previous brain graph models ignore temporal dynamics, limiting their usefulness.
method DBGDGM clusters brain regions into evolving communities and learns dynamic node embeddings.
result DBGDGM outperforms baselines in graph generation, dynamic link prediction, and graph classification.
Study uses simulation-based inference to decode brain activity from synthetic stimuli.
problem Reversing the process of brain activity emulation to recover stimuli or their properties.
method Pairing brain emulator with LLMs to learn a probabilistic mapping from brain maps to stimulus parameters.
result LLMs can serve as controllable stimulus generators and parameters can be recovered from brain maps.
Inverse inference, or "brain reading", is a recent paradigm for analyzing functional magnetic resonance imaging (fMRI) data, based on pattern recognition and statistical learning. By predicting some cognitive variables related to brain activation maps, this approach aims at decoding brain activity. Inverse inference ta…
The paper uses neural networks to segment brain tumors and predict patient survival.
problem Brain tumor segmentation and survival prediction.
method Fully convolutional neural network with encoder-decoder architecture, radiomic features, and random forest regression.
result 55.4% classification accuracy for predicting survival of patients with gross-total resection.
Survey of deep learning methods for fMRI natural image reconstruction.
problem Reconstructing natural images from fMRI brain activity.
method Survey of deep learning approaches, including architectural design, datasets, and evaluation metrics.
result Performance evaluation across standardized metrics.
Graph embedding improves fMRI classification and reveals brain region differences in ASD.
problem Difficult to embed informative brain fMRI representations due to high dimensionality and low SNR.
method Modelled fMRI as a graph, used GNN to learn from graph data, incorporated mutual information loss (Infomax).
result Infomax graph embedding improves classification performance and reveals separable nodal representations of ASD and HC groups.
SFCNeXt estimates brain age from small MRI datasets.
problem Efficiently estimating brain age from limited MRI data.
method Simple fully convolutional network (SFCNeXt) with SPEC and HRL.
result SFCNeXt outperforms complex models in small sample size scenarios.
Resting-state functional MRI (rs-fMRI) in functional neuroimaging techniques have improved in brain disorders, dysfunction studies via mapping the topology of the brain connections, i.e. connectopic mapping. Since, there are the slight differences between healthy and unhealthy brain regions and functions, investigation…
The main goal of this study is to extract a set of brain networks in multiple time-resolutions to analyze the connectivity patterns among the anatomic regions for a given cognitive task. We suggest a deep architecture which learns the natural groupings of the connectivity patterns of human brain in multiple time-resolu…
Deep neural networks map brain lesions to deficits for better brain function understanding.
problem Mapping the functional brain organization from pathological lesions.
method Deep generative neural network architectures, specifically variational convolutional volumetric auto-encoders.
result Our model outperforms established methods in lesion-deficit inference across various scenarios.
Embodied cognition states that semantics is encoded in the brain as firing patterns of neural circuits, which are learned according to the statistical structure of human multimodal experience. However, each human brain is idiosyncratically biased, according to its subjective experience history, making this biological s…
Pattern recognition in neuroimaging distinguishes between two types of models: encoding- and decoding models. This distinction is based on the insight that brain state features, that are found to be relevant in an experimental paradigm, carry a different meaning in encoding- than in decoding models. In this paper, we a…
Meta-active learning optimizes control of safety-critical systems by efficiently learning dynamics and configurations.
problem Efficiently learning system dynamics and optimal configurations for safety-critical systems like deep brain stimulation.
method Meta-learning an acquisition function using LSTM, cast as meta-learning, with a mixed-integer linear program policy.
result Achieved a 46% increase in information gain and a 20% speedup in computation time over baselines.
Brain2Char decodes text from brain recordings, achieving state-of-the-art performance.
problem Directly decoding text from brain recordings for communication.
method Combines 3D Inception layers, bidirectional recurrent layers, and language model weighted beam search. Uses CTC loss and auxiliary losses for regularization.
result Achieves 10.6%, 8.5%, and 7.0% WER on vocabulary sizes from 1200 to 1900 words.
Bayesian variational inference improves medical image segmentation confidence.
problem Improving interpretability and confidence in deep learning models for medical image segmentation.
method Encoder-decoder architecture based on variational inference for segmenting brain tumor images.
result The model segments brain tumors with both aleatoric and epistemic uncertainty.
In this paper, we propose a novel structure for a cross-modal data association, which is inspired by the recent research on the associative learning structure of the brain. We formulate the cross-modal association in Bayesian inference framework realized by a deep neural network with multiple variational auto-encoders …
Improved detection of brain tumours in MRIs using latent space dissimilarities.
problem Detecting tumours in brain MRIs using unsupervised learning.
method Slice-wise semi-supervised method based on dissimilarity between latent representations of images and their reconstructions.
result Improved detection results with higher resolution images and better reconstructions.
A novel topological method analyzes fMRI data over time.
problem Analyzing time-varying fMRI data due to noise and person-to-person variation.
method Encoding each time point as a persistence diagram of topological features.
result Time-varying persistence diagrams can cluster participants and study brain state trajectories.
TMNs model brain memory systems for continual learning.
problem Catastrophic forgetting in neural networks.
method Triple Network architecture of GANs, incorporating brain-inspired algorithms.
result New state-of-the-art performance on class-incremental learning benchmarks.
We propose a non-parametric regression methodology, Random Forests on Distance Matrices (RFDM), for detecting genetic variants associated to quantitative phenotypes representing the human brain's structure or function, and obtained using neuroimaging techniques. RFDM, which is an extension of decision forests, requires…
CI-GNN uses GNNs to diagnose psychiatric disorders by identifying causally relevant brain regions.
problem Leveraging GNNs for psychiatric diagnosis requires interpretable models to understand decision-making.
method CI-GNN integrates Granger causality into GNNs to identify causally relevant subgraphs.
result CI-GNN provides more reliable and concise explanations of psychiatric diagnoses.
Statistical machine learning methods are increasingly used for neuroimaging data analysis. Their main virtue is their ability to model high-dimensional datasets, e.g. multivariate analysis of activation images or resting-state time series. Supervised learning is typically used in decoding or encoding settings to relate…
New algorithm learns switching dynamics from multiple neural signals.
problem Learning accurate switching dynamical system models from multimodal neural data.
method Unsupervised learning algorithm for multiscale switching dynamical system models.
result Switching multiscale dynamical system models outperform single-scale models in behavior decoding.
NAS improves gliomas segmentation on MRI scans.
problem Designing optimal deep learning architectures for brain tumor segmentation.
method Neural architecture search with probabilistic parameter learning for MRI brain tumor segmentation.
result Two optimal neural architectures for brain tumor segmentation were discovered.
Proposes a method to improve skull stripping accuracy in MRI images.
problem Skull stripping accuracy in MRI images is improved.
method Context-encoding method to empower 2D networks with 3D semantic information.
result Achieves superior accuracy (dice score 99.6% on NFBS, 99.09% on LPBA40, 99.17% on OASIS) compared to state-of-the-art methods.
We propose a method to predict the subject-specific longitudinal progression of brain structures extracted from baseline MRI, and evaluate its performance on Alzheimer's disease data. The disease progression is modeled as a trajectory on a group of diffeomorphisms in the context of large deformation diffeomorphic metri…
A Python package for GLHMM, a flexible HMM framework.
problem Handling diverse HMM applications in neuroscience.
method Stochastic variational inference for large datasets.
result Enables statistical testing and out-of-sample prediction.
Framework identifies brain connectivity alterations for MDD patients using limited rs-fMRI data.
problem Difficult to analyze brain connectivity alterations from limited rs-fMRI data.
method Proposed a multitask Gaussian Bayesian network (MTGBN) framework to learn individual disease-induced alterations.
result Framework efficiently learns Bayesian network structures from limited data, showing improved performance.
New algorithm allows IGL to work with action-inclusive feedback.
problem IGL's failure in scenarios with action-inclusive feedback.
method Developed an algorithm and provided theoretical guarantees.
result Demonstrated effectiveness on large-scale experiments.
Principal component analysis (PCA) is an exploratory tool widely used in data analysis to uncover dominant patterns of variability within a population. Despite its ability to represent a data set in a low-dimensional space, the interpretability of PCA remains limited. However, in neuroimaging, it is essential to uncove…
New method reconstructs images from fMRI data using unlabeled data.
problem Challenges in acquiring labeled data for fMRI-to-image reconstruction.
method Self-supervised training with Encoder-Decoder and Decoder-Encoder networks.
result Reconstruction network adapts to new unlabeled test data.
A new method detects anomalies in images without needing model adjustments.
problem Automatic detection of medical image anomalies for radiologists.
method Complementing VAEs with KL-divergence for anomaly localization.
result The method outperforms existing techniques in various settings.
Mining discriminative subgraph patterns from graph data has attracted great interest in recent years. It has a wide variety of applications in disease diagnosis, neuroimaging, etc. Most research on subgraph mining focuses on the graph representation alone. However, in many real-world applications, the side information …
Multi-view learning can provide self-supervision when different views are available of the same data. The distributional hypothesis provides another form of useful self-supervision from adjacent sentences which are plentiful in large unlabelled corpora. Motivated by the asymmetry in the two hemispheres of the human bra…
The brain optimizes memory by forgetting what's predictable, improving generalization.
problem Memory consolidation struggles with representational drift, semanticisation, and offline replay.
method Proposes predictive forgetting as a mechanism to optimize generalization by reducing complexity.
result Predictive forgetting improves information-theoretic generalization bounds on stored representations.
DAM with MRL improves relational reasoning in MANNs.
problem Limited performance of associative memory networks on complex relational reasoning tasks.
method Distributed Associative Memory architecture with Memory Refreshing Loss.
result Enhanced relation reasoning performance of MANNs on long temporal sequence data.
Local semi-supervised method improves brain tissue classification in child MRI.
problem Inaccurate detection of brain tissue classes due to intensity variations in early developing brains.
method Kernel Fisher Discriminant Analysis (KFDA) combined with SSIM for perceptual image quality assessment.
result Optimal brain partitioning into subdomains with different average intensity values and separating surfaces between brain parts.
Deep learning models brain deformations based on atrophy and growth data.
problem Simulating brain deformations due to atrophy and growth.
method Differentiable biomechanical model using deep learning.
result Trained model can rapidly simulate new brain deformations with minimal residuals.
Neural coding is one of the central questions in systems neuroscience for understanding how the brain processes stimulus from the environment, moreover, it is also a cornerstone for designing algorithms of brain-machine interface, where decoding incoming stimulus is highly demanded for better performance of physical de…
Brain decoding is a popular multivariate approach for hypothesis testing in neuroimaging. It is well known that the brain maps derived from weights of linear classifiers are hard to interpret because of high correlations between predictors, low signal to noise ratios, and the high dimensionality of neuroimaging data. T…