Deep learning automates bacterial image classification.
problem Manual bacterial classification is time-consuming and error-prone.
method ResNet-50 pre-trained CNN architecture with transfer learning.
result Average classification accuracy of 99.2%.
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48 results for “bacterial classification”
Logistic regression with wavelets achieves bacterial infection detection accuracy.
problem Interpreting complex biomedical signal models for high-stakes decisions.
method Wavelet features and knockoff variables for feature selection.
result Logistic regression outperforms neural networks in bacterial infection detection.
Rapid identification of bacteria is essential to prevent the spread of infectious disease, help combat antimicrobial resistance, and improve patient outcomes. Raman optical spectroscopy promises to combine bacterial detection, identification, and antibiotic susceptibility testing in a single step. However, achieving cl…
Identification of feasible pathway information for c-di-GMP binding proteins in cellulose productionq-bio.QM
Paper uses machine learning to identify key pathways for c-di-GMP in bacterial genomes.
problem Understanding pathways essential for c-di-GMP in bacterial cellulose production.
method Applied Lasso and Random Forests for feature selection and modeling gene count data.
result Bacterial chemotaxis is identified as the most essential pathway for c-di-GMP encoding domains.
Machine learning identifies key metabolic control circuits in bacterial pathways.
problem Identifying regulated metabolic pathways in bacteria.
method Machine learning approach analyzing multi-omics data.
result Identification of E. coli Glycolysis regulatory circuits.
We introduce a new method for estimating the support size of an unknown distribution which provably matches the performance bounds of the state-of-the-art techniques in the area and outperforms them in practice. In particular, we present both theoretical and computer simulation results that illustrate the utility and p…
Increasingly complex generative models are being used across disciplines as they allow for realistic characterization of data, but a common difficulty with them is the prohibitively large computational cost to evaluate the likelihood function and thus to perform likelihood-based statistical inference. A likelihood-free…
Study uses machine learning to optimize antibiotic therapy for MRSA skin infections.
problem Optimizing antibiotic choice for MRSA skin infections due to reduced treatment options and side effects.
method Propensity score matching, machine learning models (SVM, RF, LASSO), counterfactual analysis.
result RF model shows stronger treatment heterogeneity and potential for therapy change.
Bayesian model fuses diverse microbiome data types.
problem Challenges in fusing different types of microbiome data.
method Flexible multinomial-Gaussian generative model with variational EM algorithm.
result Inferred latent variables provide common dimensionality reduction and predictive posterior distribution.
Bayesian deep learning ensemble improves pneumonia diagnosis accuracy.
problem Manual, time-consuming pneumonia diagnosis with high inter-observer variability.
method Multi-level ensemble classification system using Bayesian Deep Learning.
result Accuracy of 98.06% in differentiating four pathologies.
Machine learning model diagnoses COVID-19 from routine blood tests.
problem Difficulty in diagnosing COVID-19 due to inconsistent blood parameter changes.
method Constructed a machine learning model using 5,333 patients with various infections and 160 COVID-19-positive patients.
result Cross-validated AUC of 0.97, sensitivity of 81.9%, specificity of 97.9%.
We consider the problem of joint modelling of metabolic signals and gene expression in systems biology applications. We propose an approach based on input-output factorial hidden Markov models and propose a structured variational inference approach to infer the structure and states of the model. We start from the class…
Deep learning ensembles improve COVID-19 detection from chest X-rays.
problem Detecting COVID-19 from chest X-rays using machine learning.
method Custom CNN and ImageNet models, transfer learning, iterative pruning, ensemble learning.
result 99.01% accuracy in detecting COVID-19 from chest X-rays.
Antimicrobial resistance is an important public health concern that has implications in the practice of medicine worldwide. Accurately predicting resistance phenotypes from genome sequences shows great promise in promoting better use of antimicrobial agents, by determining which antibiotics are likely to be effective i…
CoroNet: A deep neural network for detection and diagnosis of COVID-19 from chest x-ray imageseess.IV
CoroNet detects COVID-19 from chest X-rays with high accuracy.
problem Detecting COVID-19 from chest X-rays using limited testing kits.
method Proposes CoroNet, a deep neural network based on Xception architecture trained on a combined dataset of COVID-19 and pneumonia X-rays.
result CoroNet achieved an overall accuracy of 89.6% and precision/recall rates of 93%/98.2% for 4-class cases (COVID vs Pneumonia bacterial vs pneumonia viral vs normal).
Improved likelihood-free inference for high-dimensional models.
problem Challenges in likelihood-free inference for high-dimensional parameter spaces.
method Bayesian optimization-based approach with misspecification-robust characterisation.
result Efficient inference in 100-dimensional space with real data application.
Coregulation of the expression of groups of genes has been extensively demonstrated empirically in bacterial and eukaryotic systems. Such coregulation can arise through the use of shared regulatory motifs, which allow the coordinated expression of modules (and module groups) of functionally related genes across the gen…
Many complex ecosystems, such as those formed by multiple microbial taxa, involve intricate interactions amongst various sub-communities. The most basic relationships are frequently modeled as co-occurrence networks in which the nodes represent the various players in the community and the weighted edges encode levels o…
Sparse Functional Singular Value Decomposition for Biclustering and Triclustering Longitudinal Datastat.ML
Unified method for discovering biclusters and triclusters in longitudinal data.
problem High-dimensional, sparsely sampled, irregularly observed longitudinal data.
method Tri-SfSVD, a unified sparse functional Singular Value Decomposition framework.
result Identified localized structures at the subject, subject-feature, and subject-feature-time levels.
Proposes TPIS for early and low-cost TB vs. pneumonia diagnosis.
problem Challenges in differentiating TB from pneumonia.
method Two-step decision support system with stacked ensemble classifiers.
result TPIS outperforms other methods in early and final diagnosis.
Dual-stage sEMG classification improves gesture recognition accuracy.
problem Improving accuracy in hand gesture recognition from sEMG signals.
method Dual-stage classification approach: first stage groups similar activities, second stage classifies within groups.
result Dual-stage classification yields significantly higher accuracy than single-stage approach.
A novel method for classification with rejection using ensemble of cost-sensitive classifiers.
problem Avoid risky misclassification in error-critical applications.
method Learning an ensemble of cost-sensitive classifiers.
result Improved classification accuracy and flexibility in loss selection.
Multi-borders classificationstat.ML
The number of possible methods of generalizing binary classification to multi-class classification increases exponentially with the number of class labels. Often, the best method of doing so will be highly problem dependent. Here we present classification software in which the partitioning of multi-class classification…
Sequence classification is an important data mining task in many real world applications. Over the past few decades, many sequence classification methods have been proposed from different aspects. In particular, the pattern-based method is one of the most important and widely studied sequence classification methods in …
Few-shot image classification is improved by correcting CNNs' texture bias.
problem Few-shot image classification performance is hindered by CNNs' texture bias.
method Corrected CNNs' texture bias using a simpler method than state-of-the-art approaches.
result State-of-the-art performance on miniImageNet task achieved.
New NHCAs improve multi-category classification efficiency.
problem Efficient multi-category classification for real-world problems.
method Twin SVM (TWSVM), Generalized eigenvalue proximal SVM (GEPSVM), Regularized GEPSVM (RegGEPSVM), and Improved GEPSVM (IGEPSVM) with OAA, BT, and TDS approaches.
result TDS-TWSVM outperforms other methods in classification accuracy.
Paper compares XGB and BPNN for music style classification.
problem Efficient music style classification using different methods.
method Feature extraction for timbral texture, rhythmic content, and pitch content; comparative evaluation of XGB and BPNN.
result XGB outperforms BPNN for small datasets in music classification.
Classification outperforms regression in portfolio construction, yielding higher Sharpe ratios.
problem Determining which machine learning approach (classification vs. regression) is more effective for portfolio construction.
method Used stacking ensemble of gradient boosted tree, random forest, and neural network models.
result Classification yields higher Sharpe ratios and economically significant alphas compared to regression.
C-HMCNN(h) improves HMC classification by leveraging class hierarchy.
problem Hierarchical multi-label classification with class hierarchy constraints.
method Exploits class hierarchy to produce coherent predictions for multi-label classification.
result C-HMCNN(h) outperforms state-of-the-art models in HMC classification.
Advances few-shot classification by treating it as supervised learning and proposing new training techniques.
problem Formulating the ability of humans to learn from limited data in machine learning.
method Formulated few-shot classification as a supervised learning problem and introduced multi-episode and cross-way training techniques.
result Proposed training strategies accelerate the training process without accuracy loss.
Improves NILM with multi-label SRC, outperforming state-of-the-art.
problem Non-intrusive load monitoring (NILM) for energy disaggregation.
method Modified multi-label sparse representation based classification (SRC).
result Significant improvement over state-of-the-art techniques with minimal training data.
New approach improves classification guarantees by focusing on direction rather than regression risk.
problem Improving classification guarantees in binary classification problems.
method Establishing a geometric distinction between classification and regression, leveraging scale invariance.
result Improved guarantees for classification risk compared to regression risk.
We study realizations of Lie algebras by vector fields. A correspondence between classification of transitive local realizations and classification of subalgebras is generalized to the case of regular local realizations. A reasonable classification problem for general realizations is rigorously formulated and an algori…
Study selective classification with halfspaces, achieving error bounds under Gaussian distributions.
problem Modeling relationships in subsets of data defined by selection rules.
method Sparse linear classifiers for subsets defined by halfspaces, focusing on Gaussian feature distributions.
result First PAC-learning algorithm for homogeneous halfspace selectors with error guarantee $\bigO*{\sqrt{\mathrm{opt}}}$.
A new network-based high-level data classification method using betweenness centrality.
problem Traditional data classification techniques focus on physical features, while high-level classification considers semantic meaning.
method Proposes a network-based high-level classification technique using betweenness centrality.
result Competent classification performance in nine real datasets compared to traditional models.
This thesis evaluates text-based vs audio-based classification of mental health interviews.
problem Classifying psychiatric illness using text-based methods.
method Design and evaluate a text classification network on mental health interviews, using belabBERT.
result Text-based classification is a strong alternative to audio-based methods.
Study on error probability for classification of heavy-tailed renewal processes.
problem Error probability in classification of heavy-tailed renewal processes.
method Asymptotic expressions for Bhattacharyya bound on misclassification error probabilities.
result Obtained asymptotic expressions for misclassification error probabilities.
Directly compute classification by learning features with class scores.
problem Classification efficiency and accuracy on various datasets.
method PCA for feature encoding, supervised learning model with encoder-decoder structure.
result Effective classification performance on multiple datasets.
This review explores resampling techniques for imbalanced binary classification.
problem Imbalanced classes lead to poor prediction results in classification.
method Classical, cost-sensitive, and Neyman-Pearson paradigms with resampling techniques and classification methods.
result Complex dynamics among resampling techniques, base methods, metrics, and imbalance ratios.
Conventional techniques for supervised classification constrain the classification rules considered and use surrogate losses for classification 0-1 loss. Favored families of classification rules are those that enjoy parametric representations suitable for surrogate loss minimization, and low complexity properties suita…
This paper tackles tweet classification by identifying purpose and position.
problem Difficulties in determining user intention and attitude in short, informal tweets.
method Transformed tweet classification into a multi-label problem and applied a multi-label classification method with post-processing.
result The method effectively classifies tweet purpose and position, outperforming individual classification methods.
Text classification on drug SMILES strings yields competitive drug type classification results.
problem Classifying drug types using conventional text classification methods.
method Treated drug SMILES as sentences and applied basic NLP methods for classification.
result Competitive drug type classification results achieved.
Paper proposes fully Bayesian approach for RVM classification, improving accuracy especially in imbalanced data.
problem Difficulty in conducting RVM classification due to lack of closed-form solution for weight parameter posterior.
method Proposes Generic Bayesian and Fully Bayesian approaches with hierarchical hyperprior structure.
result Improves classification performance, especially in imbalanced data.
This work bounds classification error in machine learning for low Bayes error conditions.
problem Understanding the error mismatch between Bayes error and model-based classification error.
method Applying classification error bounds to study the relationship with Kullback-Leibler divergence and proposing a linear approximation for low Bayes error conditions.
result A linear approximation of the classification error bound for low Bayes error conditions is proposed.
Proposes an angle-based framework for multicategory cost-sensitive classification.
problem Cost-sensitive multicategory classification challenges.
method Angle-based cost-sensitive classification framework without sum-to-zero constraint.
result Proposed boosting algorithms yield competitive classification performances.
Optimal fuzzy classification aggregation functions are weighted means.
problem Characterizing optimal fuzzy classification aggregation functions.
method Proving optimality of weighted arithmetic means for fuzzy classification.
result Optimal fuzzy classification aggregation functions are weighted means.
Set classification problems arise when classification tasks are based on sets of observations as opposed to individual observations. In set classification, a classification rule is trained with sets of observations, where each set is labeled with class information, and the prediction of a class label is performed a…
Interactive tool helps choose and understand classification metrics.
problem Common metrics for binary classification have limitations.
method Graphical application to visualize and explore evaluation metrics.
result Promotes careful attention to interpretation of metrics.