A new deep learning method for tissue-cleared image registration.
problem Efficient registration of high-resolution tissue-cleared images.
method Densely connected convolutional architecture for deformable image registration, unsupervised training.
result Comparable and superior registration performance to state-of-the-art methods, especially at higher resolutions.
NeuralFLoC unifies registration and clustering of functional data, overcoming phase variation challenges.
problem Challenges in clustering functional data due to phase variation and temporal misalignment.
method NeuralFLoC uses Neural ODE-driven diffeomorphic flows and spectral clustering for joint registration and clustering.
result NeuralFLoC effectively disentangles phase and amplitude variation, achieving state-of-the-art performance.
Paper tackles shape graph registration using neural networks.
problem Constrained registration of shape graphs with varying nodes and edges.
method Shape-Graph Matching Network (SGM-net) with an elastic shape metric loss function.
result State-of-the-art matching performance and reduced computational cost.
CycleMorph improves image registration by preserving topology with cycle consistency.
problem Preserving original topology during deformation in image registration.
method Cycle-consistent deformable image registration approach.
result Effective and accurate registration on diverse image pairs within seconds.
A new method uses Gaussian Processes for feature-based nonrigid image registration.
problem Estimating dense displacement fields for nonrigid image registration.
method Using Gaussian Processes to estimate both dense displacement field and uncertainty map.
result GP-based interpolation performs similarly to state-of-the-art B-spline interpolation.
Novel unsupervised method for fast 3D image registration using cycle-consistent CNN.
problem Medical image registration for cancer diagnosis.
method Unsupervised deep learning using cycle-consistent CNN for deformable registration.
result Very precise 3D image registration within a few seconds, improving cancer size estimation.
DET unifies geometric and functional alignment for high-dimensional scientific data.
problem Challenges in nonrigid registration for high-dimensional, irregular data.
method Domain Elastic Transform (DET) treats data as functions on irregular domains, using a Bayesian framework for elastic motion registration.
result DET achieves 92% topological preservation on MERFISH data and successfully registers whole-embryo Stereo-seq atlases.
This paper predicts registration error in medical images using a random regression forest.
problem Predicting registration error in medical images without a ground truth.
method Random regression forest trained on features related to transformation model and dissimilarity after registration.
result The method achieves good performance in automatic quality control of large-scale image analysis.
Neural network iteratively refines image registration, achieving compactness and speed.
problem Non-compact representation of deformations in image registration.
method Recurrent registration neural network that computes local deformations iteratively.
result Our method achieves similar accuracy but is more compact and faster.
We consider the problem of universal joint clustering and registration of images and define algorithms using multivariate information functionals. We first study registering two images using maximum mutual information and prove its asymptotic optimality. We then show the shortcomings of pairwise registration in multi-i…
Review of deep learning methods in medical image registration.
problem Improving accuracy and efficiency of medical image registration.
method Classification and detailed analysis of seven categories of DL-based registration methods.
result Comprehensive comparison of DL-based methods for lung and brain registration.
This paper presents a method to obtain geometric registrations between high-genus (g≥1) surfaces. Surface registration between simple surfaces, such as simply-connected open surfaces, has been well studied. However, very few works have been carried out for the registration of high-genus surfaces. The high-genus t…
Registration, which aims to find an optimal one-to-one correspondence between different data, is an important problem in various fields. This problem is especially challenging when large deformations occur. In this paper, we present a novel algorithm to obtain diffeomorphic image or surface registrations with large def…
Adversarial learning improves image registration networks without smoothness penalties.
problem Training image registration networks with weak labels and without smoothness constraints.
method Adversarial learning to regularize network predictions, using biomechanical simulations.
result End-to-end trained network predicts plausible deformations with minimal smoothness penalties.
PRNet registers partial 3D shapes using deep learning.
problem Partial-to-partial point cloud registration.
method Self-supervised deep learning network for non-convex alignment and partial correspondence.
result Outperforms existing methods on synthetic data.
Registration, which aims to find an optimal 1-1 correspondence between shapes, is an important process in different research areas. Conformal mappings have been widely used to obtain a diffeomorphism between shapes that minimizes angular distortion. Conformal registrations are beneficial since it preserves the local ge…
DeepFRC learns both alignment and classification of functional data in one model.
problem Phase variability in functional data obscures underlying patterns and degrades model performance.
method End-to-end deep learning framework that combines diffeomorphic warping functions and a classifier.
result DeepFRC outperforms state-of-the-art methods in both alignment quality and classification accuracy.
Chain of neural networks learns scale-specific features for fast multimodal image registration.
problem Non-rigid registration of multimodal images, especially in remote sensing.
method Chain of fully-convolutional neural networks designed to learn scale-specific features, predicting deformation directly.
result Global registration in linear time, outperforming current methods in remote sensing tasks.
A new metric for comparing HMMs, especially GMM-HMMs, without Monte Carlo samples.
problem Comparing Hidden Markov Models (HMMs) with Gaussian conditional distributions.
method Aggregated Wasserstein metric based on optimal transport between Gaussian mixtures.
result The Aggregated Wasserstein metric is a semi-metric that can be computed efficiently and is invariant to state relabeling.
Hybrid CNN improves segmentation and registration of white matter tracts.
problem Accurate analysis of longitudinal brain imaging data.
method A hybrid CNN integrating segmentation and registration into a single procedure.
result Hybrid CNN outperforms multistage pipelines in segmentation accuracy, consistency, and speed.
SparseVM registers clinical 3D scans faster and more accurately.
problem Inaccurate and slow registration of sparse clinical 3D scans.
method Learning-based registration method tailored for clinical sparse MRI.
result Orders of magnitude faster and more accurate than existing methods.
Optimizes metric in LDDMM for better image registration and classification.
problem Improving image registration and predictive modeling in medical imaging.
method Machine learning approach using kernel Fischer Linear Discriminant Analysis (KLDA) to optimize the Riemannian metric on diffeomorphisms.
result Significant improvement in ROC AUC for schizophrenia control prediction.
A new method monitors unstructured 3D shapes without registration.
problem Error-prone registration and mesh reconstruction steps in PCD monitoring.
method Intrinsic geometric properties of shapes, using Laplacian and geodesic distances.
result Effective monitoring of defects without registration and mesh reconstruction.
High-dimensional ConvNets detect patterns in 32+ dimensions for geometric registration.
problem Detecting geometric patterns in high-dimensional spaces.
method High-dimensional convolutional networks applied to geometric registration problems.
result High-dimensional ConvNets outperform global pooling approaches in 3D registration and image correspondence.
Gradient flow on diffeomorphisms for image registration, with well-posedness proven.
problem Image registration with metric tensor deformation penalization.
method Gradient flow on Sobolev diffeomorphisms for a specific energy functional.
result Well-posedness of the gradient flow established.
These lecture notes explain the geometry and discuss some of the analytical questions underlying image registration within the framework of large deformation diffeomorphic metric mapping (LDDMM) used in computational anatomy.
A new method combines metrics for shape registration, inheriting advantages from both curve and surface approaches.
problem Designing effective Riemannian metrics for diffeomorphic shape registration.
method Combining parametrization-invariant metrics on immersions with metrics from Riemannian submersions from diffeomorphism groups.
result The hybrid approach inherits advantages from both methods and provides additional flexibility.
A new method for 3D surface registration using dynamic programming.
problem Elastic shape registration of 3D surfaces.
method Optimization over a subset of reparametrizations using dynamic programming.
result Proposes an algorithm that produces a solution closer to optimal than gradient-based methods.
New method uses image registration to recover complex signals from amplitude data.
problem Recovering complex-valued signals from amplitude measurements.
method Indirect registration using LDDMM formalism with exterior calculus.
result Algorithm performs well under various conditions including noise and topology.
The paper extends LDDMM framework to include Lie group actions in large deformation shape registration.
problem Modeling smooth, invertible transformations between shapes using Lie groups and diffeomorphisms.
method Develops a registration model that decouples the actions of Lie groups and diffeomorphisms, using semidirect products and right-invariant sub-Riemannian structures.
result Joint optimization over both deformation groups improves registration accuracy and disentangles contributions.
A novel 3D shape registration method using spectral graph embedding and probabilistic matching.
problem Challenges in 3D shape analysis and registration, especially with large variability.
method Combining spectral graph matching with Laplacian embedding for large graphs, using commute-time embedding and PCA.
result A method to register shapes with different samplings and isometric deformations.
A new method for automatically aligning and clustering time series data.
problem Challenges in aligning and clustering time series data, especially without a template signal.
method TROUT (Temporal Registration using Optimal Unitary Transformations) method based on a novel dissimilarity measure.
result TROUT outperforms competitors in clustering time series data.
A new method for non-rigid point set registration reduces computational complexity.
problem Efficiently registering non-rigid point sets with large numbers of points.
method Structured Analytic Coherent Point Drift (Analytic-CPD) reformulates CPD for structured analytic mappings.
result Analytic-CPD reduces computational complexity by controlling the deformation model's dimensionality.
A registration-free framework monitors shape and color in 4D point clouds.
problem Monitoring shape and color changes in complex parts without registration.
method Laplace-Beltrami operator spectral properties for geometric and color feature capture; combined monitoring scheme for shape and color anomalies.
result Effective detection of shape deformations and color anomalies without registration or mesh reconstruction.
Information theoretical measures, such as entropy, mutual information, and various divergences, exhibit robust characteristics in image registration applications. However, the estimation of these quantities is computationally intensive in high dimensions. On the other hand, consistent estimation from pairwise distances…
We survey the role of symmetry in diffeomorphic registration of landmarks, curves, surfaces, images and higher-order data. The infinite dimensional problem of finding correspondences between objects can for a range of concrete data types be reduced resulting in compact representations of shape and spatial structure. Th…
Improved race prediction model outperforms existing methods.
problem Improving race prediction using voter registration data.
method Trained BiLSTM model on voter registration data and created an ensemble.
result Achieved up to 36.8% higher OOS F1 scores than previous models.
Study shows registration regime improves IPO pricing efficiency in China.
problem Improving IPO pricing efficiency in China's entrepreneurial boards.
method Examined the impacts of regime changes and rule implementations on IPO pricing efficiency.
result The registration regime is most efficient in Chinese IPO pricing.
We propose a framework, named Aggregated Wasserstein, for computing a dissimilarity measure or distance between two Hidden Markov Models with state conditional distributions being Gaussian. For such HMMs, the marginal distribution at any time spot follows a Gaussian mixture distribution, a fact exploited to softly matc…
Unified approach for predicting missing segments in partially observed functions.
problem Predicting missing segments in partially observed functions with complex dependence and irregular noise.
method Unified registration and prediction approach under the conformal prediction framework, integrating amplitude and phase components.
result Effective prediction bands with finite-sample marginal coverage guarantees under weak assumptions.
Diffusion magnetic resonance imaging (dMRI) and tractography provide means to study the anatomical structures within the white matter of the brain. When studying tractography data across subjects, it is usually necessary to align, i.e. to register, tractographies together. This registration step is most often performed…
A new method resolves permutation issues in shuffled linear regression for large-scale applications.
problem Estimating latent features through linear transformation with unknown permutations.
method Spectral matching method to align spectral components of measurement and feature covariances.
result Achieves accurate estimates in shuffled LS and LASSO settings with sufficient samples.
A novel score decouples shape deformations for better shape analysis.
problem High-dimensional deformations absorb lower-dimensional components, affecting statistical analysis.
method Introduces a coupling score using varifold representation of vector fields to quantify and decouple deformation modes.
result The coupling score effectively decouples distinct deformation modes during registration, improving shape analysis.
A new tensor model merges curve registration and tensor decomposition.
problem Retrieving latent factors and diffeomorphisms from data slices.
method Introduced a registered CP tensor model with a diffeomorphism constraint.
result Simulation results show registered CP outperforms other models.
MarmoNet automates analysis of marmoset brain axonal projections.
problem Automatically detect and segment axonal tracer signals in noisy, cluttered images.
method Uses machine learning, specifically CNNs and image registration, to process and map axonal projections.
result Automated pipeline extracts and maps axonal projections robustly.
Radiological imaging of the prostate is becoming more popular among researchers and clinicians in searching for diseases, primarily cancer. Scans might be acquired with different equipment or at different times for prognosis monitoring, with patient movement between scans, resulting in multiple datasets that need to be…
The paper registers noisy curves using M-estimation for rotation and scaling parameters.
problem Registration of noisy curves with rotation and scaling parameters.
method M-estimation procedure for estimating rotation and scaling parameters.
result Consistency and asymptotic normality of the estimators proved.
Optimizes PDE-constrained LDDMM for efficient non-rigid registration.
problem Inexact Newton-Krylov optimization in PDE-constrained LDDMM leads to poor geodesic paths.
method Band-limited vector field parameterization to optimize computational complexity.
result Optimized method shows competitive performance with reduced memory load and computational time.