A locally-built, LLM-digested index of recent arXiv papers in quant finance, geometry/topology, and statistical ML — keyword search served straight from SQLite on this machine.
Study on the structure of classifier boundaries in DNA sequencing.
Classifies intrinsically linked tournaments by their score sequences.
RS-Del provides robustness for sequence classifiers against edit distance attacks.
Differentiable language model attacks improve adversarial examples for categorical sequence classifiers.
Viral sequence classification is an important task in pathogen detection, epidemiological surveys and evolutionary studies. Statistical learning methods are widely used to classify and identify viral sequences in samples from environments. These methods face several challenges associated with the nature and properties …
New algorithm improves interpretability in sequence classification.
When analyzing the genome, researchers have discovered that proteins bind to DNA based on certain patterns of the DNA sequence known as "motifs". However, it is difficult to manually construct motifs due to their complexity. Recently, externally learned memory models have proven to be effective methods for reasoning ov…
Extends cobordism groups of immersions to projections with new results.
Proves a conjecture for a specific group using spectral sequences and homology.
New algorithm classifies and generates genomic sequences using RG-flow categorifier.
The worldwide surge of multiresistant microbial strains has propelled the search for alternative treatment options. The study of Protein-Protein Interactions (PPIs) has been a cornerstone in the clarification of complex physiological and pathogenic processes, thus being a priority for the identification of vital compon…
This belongs to a series of papers devoted to the study of the cohomology of classifying spaces of Lie groupoids. Our aim here is to introduce and study the notion of representation up to homotopy of Lie groupoids, the resulting derived category, and to show that the adjoint representation is well defined as a represen…
The dominant automatic lexical stress detection method is to split the utterance into syllable segments using phoneme sequence and their time-aligned boundaries. Then we extract features from syllable to use classification method to classify the lexical stress. However, we can't get very accurate time boundaries of eac…
Stratifying patients at risk for postoperative complications may facilitate timely and accurate workups and reduce the burden of adverse events on patients and the health system. Currently, a widely-used surgical risk calculator created by the American College of Surgeons, NSQIP, uses 21 preoperative covariates to asse…
Machine learning accurately diagnoses cancer from whole genome sequencing data.
Classifies metric lines in Engel-type groups, a step towards solving sub-Riemannian manifold problems.
Machine learning and data mining techniques have been used extensively in order to detect credit card frauds. However, most studies consider credit card transactions as isolated events and not as a sequence of transactions. In this framework, we model a sequence of credit card transactions from three different perspect…
Bayesian classifiers converge under certain exchangeability conditions with more data.
Amino acid sequence portrays most intrinsic form of a protein and expresses primary structure of protein. The order of amino acids in a sequence enables a protein to acquire a particular stable conformation that is responsible for the functions of the protein. This relationship between a sequence and its function motiv…
We construct and analyse models of equivariant cohomology for differentiable stacks with Lie group actions extending classical results for smooth manifolds due to Borel, Cartan and Getzler. We also derive various spectral sequences for the equivariant cohomology of a differentiable stack generalising among others Bott'…
Non-coding RNA (ncRNA) are RNA sequences which don't code for a gene but instead carry important biological functions. The task of ncRNA classification consists in classifying a given ncRNA sequence into its family. While it has been shown that the graph structure of an ncRNA sequence folding is of great importance for…
We describe our first-place solution to the Animal Behavior Challenge (ABC 2018) on predicting gender of bird from its GPS trajectory. The task consisted in predicting the gender of shearwater based on how they navigate themselves across a big ocean. The trajectories are collected from GPS loggers attached on shearwate…
We study the problem of classifying interval-based temporal sequences (IBTSs). Since common classification algorithms cannot be directly applied to IBTSs, the main challenge is to define a set of features that effectively represents the data such that classifiers can be applied. Most prior work utilizes frequent patter…
We classify invariant complex structures on 6-dimensional nilmanifolds up to equivalence. As an application, the behaviour of the associated Frölicher sequence is studied as well as its relation to the existence of strongly Gauduchon metrics. We also show that the strongly Gauduchon property and the balanced property a…
Promoter is a short region of DNA which is responsible for initiating transcription of specific genes. Development of computational tools for automatic identification of promoters is in high demand. According to the difference of functions, promoters can be of different types. Promoters may have both intra and inter cl…
The curve graph and related graphs are hyperbolic and have quasi-tree fibers.
Classifier chain (CC) is a multi-label learning approach that constructs a sequence of binary classifiers according to a label order. Each classifier in the sequence is responsible for predicting the relevance of one label. When training the classifier for a label, proceeding labels will be taken as extended features. …
Adversarial consistency depends on the uniqueness of adversarial Bayes classifiers.
Auto-regressive sequence-to-sequence models with attention mechanism have achieved state-of-the-art performance in many tasks such as machine translation and speech synthesis. These models can be difficult to train. The standard approach, teacher forcing, guides a model with reference output history during training. Th…
The study classifies tilings of the sphere by congruent quadrilaterals.
Paper presents IMRCs for evolving tasks with forward and backward learning.
We study sequences of 3-dimensional solutions to the Ricci flow with almost nonnegative sectional curvatures and diameters tending to infinity. Such sequences may arise from the limits of dilations about singularities of Type IIb. In particular, we study the case when the sequence collapses, which may occur when dilati…
Avian Influenza breakouts cause millions of dollars in damage each year globally, especially in Asian countries such as China and South Korea. The impact magnitude of a breakout directly correlates to time required to fully understand the influenza virus, particularly the interspecies pathogenicity. The procedure requi…
We explore the possibility of using machine learning to identify interesting mathematical structures by using certain quantities that serve as fingerprints. In particular, we extract features from integer sequences using two empirical laws: Benford's law and Taylor's law and experiment with various classifiers to ident…
A novel transformer model improves classification of partially ordered sequences.
The standard approach to supervised classification involves the minimization of a log-loss as an upper bound to the classification error. While this is a tight bound early on in the optimization, it overemphasizes the influence of incorrectly classified examples far from the decision boundary. Updating the upper bound …
Paper constructs a spectral sequence linking annular Khovanov homology to reduced Khovanov homology.
Microbial clades modeling is a challenging problem in biology based on microarray genome sequences, especially in new species gene isolates discovery and category. Marker family genome sequences play important roles in describing specific microbial clades within species, a framework of support vector machine (SVM) base…
Improved incremental sequence classification with temporal consistency.
Deep learning models based on CNNs are predominantly used in image classification tasks. Such approaches, assuming independence of object categories, normally use a CNN as a feature learner and apply a flat classifier on top of it. Object classes in many settings have hierarchical relations, and classifiers exploiting …
Given the emerging global threat of antimicrobial resistance, new methods for next-generation antimicrobial design are urgently needed. We report a peptide generation framework PepCVAE, based on a semi-supervised variational autoencoder (VAE) model, for designing novel antimicrobial peptide (AMP) sequences. Our model l…
Future predictions on sequence data (e.g., videos or audios) require the algorithms to capture non-Markovian and compositional properties of high-level semantics. Context-free grammars are natural choices to capture such properties, but traditional grammar parsers (e.g., Earley parser) only take symbolic sentences as i…
Artificial neural networks (ANNs) have gained a well-deserved popularity among machine learning tools upon their recent successful applications in image- and sound processing and classification problems. ANNs have also been applied for predicting the family or function of a protein, knowing its residue sequence. Here w…
Classifies colored links and spatial graphs up to colored link-homotopy.
We construct and classify, in the case of two complex dimensions, the possible tangent cones at points of limit spaces of non-collapsed sequences of Kähler-Einstein metrics with cone singularities.
Numbers and numerical vectors account for a large portion of data. However, recently the amount of string data generated has increased dramatically. Consequently, classifying string data is a common problem in many fields. The most widely used approach to this problem is to convert strings into numerical vectors using …
New methods tackle adversarial attacks on categorical sequences, improving model security.
Motivated by real-world machine learning applications, we consider a statistical classification task in a sequential setting where test samples arrive sequentially. In addition, the generating distributions are unknown and only a set of empirically sampled sequences are available to a decision maker. The decision maker…