R package stagedtrees learns staged tree structures from data.
problem Learning the structure of staged trees from data.
method Score-based and clustering-based algorithms implemented.
result Illustrated capabilities using two datasets.
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Develops rMultiNet R package for multilayer network analysis.
problem Analyzing multilayer network data.
method Two frameworks: MMSBM and MMLSM for generating multilayer networks; methods for node and layer embedding; clustering.
result Provides tools for multilayer network analysis.
New R package for NMF evaluated on real-world data.
problem Limited comprehensive evaluations of NMF packages under real-world conditions.
method Systematic performance comparison of three NMF packages using real-world data.
result New package outperforms existing ones in computational efficiency and reconstruction accuracy.
R package innsight interprets deep neural networks predictions.
problem Interpreting predictions of deep neural networks.
method Unified and user-friendly framework implementing feature attribution methods for neural networks, independent of deep learning library.
result Offers a variety of visualization tools for tabular, signal, image data or a combination.
R package sentometrics analyzes text sentiment for predictions.
problem Unlocking value from textual data using sentiment analysis.
method Optimized textual sentiment indexation with R package sentometrics.
result Forecasted CBOE Volatility Index using text sentiment data.
R package abn fits Bayesian models to observational data.
problem Analyzing complex observational datasets with Bayesian networks.
method Bayesian and information theoretic scoring, exact and greedy search algorithms.
result Effective modeling of mixed data types and prior knowledge integration.
The R Package CEC performs clustering based on the cross-entropy clustering (CEC) method, which was recently developed with the use of information theory. The main advantage of CEC is that it combines the speed and simplicity of -means with the ability to use various Gaussian mixture models and reduce unnecessary cl…
rmlnomogram: An R package to construct an explainable nomogram for any machine learning algorithmscs.LG
Developed R package for creating nomograms for any ML algorithms.
problem Creating nomograms for any machine learning algorithms.
method Formulated a function to transform ML prediction models into nomograms, requiring specific datasets.
result Created 5 types of nomograms for various ML algorithms and predictor types.
BKP R package models spatially varying binomial probabilities efficiently.
problem Modeling spatially varying binomial probabilities efficiently.
method Beta Kernel Process (BKP) combining localized kernel-weighted likelihoods with conjugate beta priors.
result Closed-form posterior inference without requiring latent variables or intensive MCMC sampling.
Background and objective: Stacking is an ensemble machine learning method that averages predictions from multiple other algorithms, such as generalized linear models and regression trees. An implementation of stacking, called super learning, has been developed as a general approach to supervised learning and has seen f…
Automated Residual Plot Assessment With the R Package autovi and the Shiny Application autovi.webstat.ML
Automate residual plot assessment with R package and Shiny application
problem Diagnosing linear models
method Computer vision model for residual plot assessment
result Predicts visual signal strength and supports model fit assessment
The R package psvmSDR: A Unified Algorithm for Sufficient Dimension Reduction via Principal Machinesstat.CO
R package psvmSDR simplifies SDR computation for machine learning.
problem Sufficient dimension reduction in machine learning.
method Principal machine (PM) generalized from PSVM.
result Efficient computation of SDR estimators in various scenarios.
DynForest R package predicts outcomes with time-dependent predictors.
problem Handling time-dependent predictors in random forest models.
method Random forests with time-dependent predictors summarized using flexible linear mixed models.
result DynForest can predict continuous, categorical, and survival outcomes.
R package for counterfactual explanation methods.
problem Lack of unified interfaces for counterfactual explanation methods.
method Developed a modular R6-based interface for three existing counterfactual methods and proposed extensions.
result Comparison of implemented methods' quality and runtime behavior.
R package for machine learning in survival analysis.
problem Limited machine learning interfaces for survival analysis.
method Provides a comprehensive machine learning interface for survival analysis.
result Systematic infrastructure for survival modeling and evaluation.
LLT transforms time series features based on linear laws.
problem Classifying univariate and multivariate time series.
method Time-delay embedding, spectral decomposition, and feature transformation.
result Transformed features improve classification accuracy.
fmeffects package interprets non-linear models in plain language.
problem Interpreting complex non-linear models.
method Forward marginal effects for model-agnostic explanations.
result First software implementation of forward marginal effects.
Rdimtools simplifies DR and IDE for high-dimensional data analysis.
problem Discovering patterns in complex high-dimensional data.
method Provides an R package with 133 DR and 17 IDE algorithms.
result Facilitates geometric understanding of high-dimensional data.
R package for online forecasting in various fields.
problem Frequent updates of forecasts in online settings.
method Generalized setup for time-adaptive fitting of dynamical and non-linear models.
result Effective use of forecasts as model inputs in operational settings.
BiDAG R package learns and samples Bayesian network structures efficiently.
problem Efficiently learning and sampling Bayesian network structures.
method Hybrid approach combining PC algorithm, iterative order MCMC, and partition MCMC.
result BiDAG can handle both discrete and continuous data.
grangersearch: An R Package for Exhaustive Granger Causality Testing with Tidyverse Integrationstat.CO
grangersearch tests causal relationships in time series data.
problem Testing causal relationships between multiple time series.
method Exhaustive pairwise search, automatic lag order optimization, tidyverse integration.
result Automated Granger causality testing simplifies causal analysis.
R package for multi-objective model selection in statistics.
problem Model selection challenges in statistics, especially for penalized models.
method Multi-objective optimization using Gaussian process-based optimization.
result Identification of hyperparameter values that represent desirable trade-offs.
diproperm tests differences in HDLSS data with binary classifiers.
problem Testing differences in HDLSS data with binary classifiers.
method DiProPerm test for binary linear classifiers.
result Validates the DiProPerm test on real-world data.
stCEG models spatial events using Chain Event Graphs in R.
problem Modeling events over spatial areas.
method Full specification of CEG models from data, interactive plots, web GUI.
result First software for CEGs with full model customisation.
ctsfeatures R package analyzes categorical time series data.
problem Lack of tools for analyzing categorical time series data.
method Provides functions for extracting statistical features and constructing graphs.
result Package enables traditional machine learning tasks on categorical time series.
OpenML is an online machine learning platform where researchers can easily share data, machine learning tasks and experiments as well as organize them online to work and collaborate more efficiently. In this paper, we present an R package to interface with the OpenML platform and illustrate its usage in combination wit…
R package otsfeatures analyzes ordinal time series data.
problem Lack of tools for analyzing ordinal time series data.
method Provides functions for extracting statistical features and performing inferential tasks.
result Package enables traditional machine learning tasks on ordinal time series.
This paper presents the R package gRapHD for efficient selection of high-dimensional undirected graphical models. The package provides tools for selecting trees, forests and decomposable models minimizing information criteria such as AIC or BIC, and for displaying the independence graphs of the models. It has also some…
FSinR is a comprehensive R package for feature selection.
problem Feature selection in machine learning.
method Filter and wrapper methods, search algorithms.
result Provides a variety of feature selection methods and search algorithms.
bnlearn is an R package which includes several algorithms for learning the structure of Bayesian networks with either discrete or continuous variables. Both constraint-based and score-based algorithms are implemented, and can use the functionality provided by the snow package to improve their performance via parallel c…
ecpc R-package improves high-dimensional prediction with co-data.
problem High-dimensional prediction with more variables than samples.
method Adaptive ridge penalised models with co-data, including continuous co-data.
result Improved variable selection and prediction performance.
xtdml: Double Machine Learning Estimation to Static Panel Data Models with Fixed Effects in Recon.EM
R package xtdml uses DML for panel data models with fixed effects.
problem Estimating structural parameters in panel data models with fixed effects.
method Combines machine learning with statistical estimation for inference.
result Demonstrates improved performance in learning nuisance functions.
The flare Package for High Dimensional Linear Regression and Precision Matrix Estimation in Rstat.ML
A new R package for high-dimensional regression and precision matrix estimation.
problem High-dimensional linear regression and precision matrix estimation challenges.
method flare package implements various regression methods and extensions for sparse precision matrix estimation.
result The flare package is efficient and scalable for large problems.
This paper catalogs R packages for explaining AI models.
problem Ensuring safe and effective functioning of predictive models.
method Taxonomy of model explanations and comparison of R packages.
result 27 R packages for XAI identified and compared.
Responds to comments on Bayesian Logic Regression algorithm, provides extensions and tutorial.
problem Improving Bayesian Logic Regression algorithm and its applications.
method Summarizes and responds to discussants' comments, provides extensions and tutorial.
result Extensions and tutorial for the Bayesian Logic Regression algorithm.
Unified R packages for forecast reconciliation of constrained series.
problem Improving accuracy and coherence of forecasts for linearly constrained multiple time series.
method Classical and machine learning-based linear reconciliation approaches for cross-sectional, temporal, and cross-temporal frameworks.
result Unified toolbox for forecast reconciliation in R.
RFpredInterval: An R Package for Prediction Intervals with Random Forests and Boosted Forestsstat.ML
RFpredInterval package builds prediction intervals for random forests and boosted forests.
problem Quantifying uncertainty in random forest and boosted forest point predictions.
method 16 methods to build prediction intervals with random forests and boosted forests.
result The proposed method outperforms existing methods in building prediction intervals.
latrend simplifies longitudinal clustering for numeric measurements.
problem Clustering of longitudinal data to identify common trends over time.
method Unified framework for applying various clustering methods.
result Facilitates comparison and rapid prototyping of new methods.
R package huge simplifies graph estimation for high-dimensional data.
problem Estimating high-dimensional undirected graphs from data.
method Uses recent results in literature, including recent graph estimation methods.
result Improves on existing package glasso by providing more features and better efficiency.
pmsims R package uses Gaussian process for flexible sample size estimation in clinical models.
problem Determining adequate sample size for clinical prediction models.
method Simulation-based Gaussian process search for flexible sample size estimation.
result Gaussian process-based method produces more stable sample size estimates, especially in challenging settings.
R package spca computes sparse principal components efficiently.
problem Sparse principal components analysis (SPCA) for interpretable data.
method Least squares sparse principal component analysis (LS-SPCA) with efficient C++ backend.
result Computes sparse principal components that maximize variance and maintain strong correlations with PCs.
RKUM is an R package for robust kernel-based unsupervised methods.
problem Robust analysis under contaminated or noisy data conditions.
method Robust kernel covariance and cross-covariance operators using generalized loss functions.
result RKUM reduces sensitivity to contamination and effectively identifies outliers.
DoubleML implements machine learning for causal inference in R.
problem Estimating causal effects in regression models with high-dimensional data.
method Double machine learning framework with Neyman orthogonality and sample splitting.
result Valid inference on causal parameters using machine learning methods.
FBMS R package simplifies Bayesian model selection and averaging.
problem Complex regression settings with multi-modal posterior landscapes.
method Efficient MJMCMC and GMJMCMC algorithms for Bayesian model exploration.
result FBMS effectively handles Bayesian generalized linear and nonlinear models.
DPpack offers R tools for private data analysis and machine learning.
problem Ensuring privacy in statistical analysis and machine learning.
method Differential privacy mechanisms (Laplace, Gaussian, exponential).
result User-friendly implementation of privacy-preserving models.
Bayesian synthetic likelihood (BSL) is a popular method for estimating the parameter posterior distribution for complex statistical models and stochastic processes that possess a computationally intractable likelihood function. Instead of evaluating the likelihood, BSL approximates the likelihood of a judiciously chose…
Penalized regression models such as the lasso have been extensively applied to analyzing high-dimensional data sets. However, due to memory limitations, existing R packages like glmnet and ncvreg are not capable of fitting lasso-type models for ultrahigh-dimensional, multi-gigabyte data sets that are increasingly seen …
Oddnet detects anomalies in dynamic networks using time series methods.
problem Detecting anomalies in temporal networks (e.g., transport, social networks).
method Feature-based network anomaly detection using time series methods.
result Demonstrated effectiveness on synthetic and real-world datasets.