Mapper and Ball Mapper tools for complex data analysis.
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Optimizes cover parameter in Mapper algorithm for better visualization.
The construction of Mapper has emerged in the last decade as a powerful and effective topological data analysis tool that approximates and generalizes other topological summaries, such as the Reeb graph, the contour tree, split, and joint trees. In this paper, we study the parallel analysis of the construction of Mappe…
Mapper is an unsupervised machine learning algorithm generalising the notion of clustering to obtain a geometric description of a dataset. The procedure splits the data into possibly overlapping bins which are then clustered. The output of the algorithm is a graph where nodes represent clusters and edges represent the …
Mapper-GIN simplifies 3D point cloud classification with lightweight structure.
Improved Mapper algorithm for datasets with varying density.
Bi-filtration stabilizes TDA mapper results under noise.
A new Mapper algorithm optimizes data visualization through automatic parameter tuning.
Topological data analysis aims to extract topological quantities from data, which tend to focus on the broader global structure of the data rather than local information. The Mapper method, specifically, generalizes clustering methods to identify significant global mathematical structures, which are out of reach of man…
Reeb spaces, as well as their discretized versions called Mappers, are common descriptors used in Topological Data Analysis, with plenty of applications in various fields of science, such as computational biology and data visualization, among others. The stability and quantification of the rate of convergence of the Ma…
New tool helps analyze complex financial data.
Node-link diagrams are a popular method for representing graphs that capture relationships between individuals, businesses, proteins, and telecommunication endpoints. However, node-link diagrams may fail to convey insights regarding graph structures, even for moderately sized data of a few hundred nodes, due to visual …
Recent advancements in graph representation learning have led to the emergence of condensed encodings that capture the main properties of a graph. However, even though these abstract representations are powerful for downstream tasks, they are not equally suitable for visualisation purposes. In this work, we merge Mappe…
AuToMATo clusters data without tuning parameters, outperforming others.
This paper proposes a new method for learning covers of geometric datasets to improve topological inference and visualization.
We present ShapeVis, a scalable visualization technique for point cloud data inspired from topological data analysis. Our method captures the underlying geometric and topological structure of the data in a compressed graphical representation. Much success has been reported by the data visualization technique Mapper, th…
New algorithm explains neural network extrema for better model generalization.
Firm financials are well established as return predictors, being the inspiration for a large set of anomalies in the asset pricing literature. Employing topological data analysis we revisit the question of association between seven of the most commonly studied financial ratios and stock returns. Specifically the TDA Ba…
Strong regulations in the financial industry mean that any decisions based on machine learning need to be explained. This precludes the use of powerful supervised techniques such as neural networks. In this study we propose a new unsupervised and semi-supervised technique known as the topological hierarchical decomposi…
Pediatric obstructive sleep apnea affects an estimated 1-5% of elementary-school aged children and can lead to other detrimental health problems. Swift diagnosis and treatment are critical to a child's growth and development, but the variability of symptoms and the complexity of the available data make this a challenge…
DCoM uses deep neural networks to detect semantic data types from raw column values.
Neural encoding and decoding, which aim to characterize the relationship between stimuli and brain activities, have emerged as an important area in cognitive neuroscience. Traditional encoding models, which focus on feature extraction and mapping, consider the brain as an input-output mapper without inner states. In th…
This study uses TDA to map corporate failure, revealing distinct regions of risk.
NM-VQTSG improves synthetic time series fidelity by aligning distributions.
Survey of embedding methods for high-dimensional and network data.
Recent automated crop mapping via supervised learning-based methods have demonstrated unprecedented improvement over classical techniques. However, most crop mapping studies are limited to same-year crop mapping in which the present year's labeled data is used to predict the same year's crop map. Classification accurac…
Metagenomics characterizes the taxonomic diversity of microbial communities by sequencing DNA directly from an environmental sample. One of the main challenges in metagenomics data analysis is the binning step, where each sequenced read is assigned to a taxonomic clade. Due to the large volume of metagenomics datasets,…