Proposes a method to derive knowledge graphs from EHR data.
arXiv research
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We introduce block-tree graphs as a framework for deriving efficient algorithms on graphical models. We define block-tree graphs as a tree-structured graph where each node is a cluster of nodes such that the clusters in the graph are disjoint. This differs from junction-trees, where two clusters connected by an edge al…
Extends VAEs to handle complex Bayesian network structures.
Clusterpath estimator simplifies graphical model interpretation for large datasets.
This paper shows how to perform likelihood inference for complex graphical models efficiently.
New method learns graphical models with latent variables for extreme events.
Paper relaxes identifiability conditions for causal models with latent variables.
Graphical lasso models ASR utterance dependencies for consistent WER estimation.
New method for fitting graphical models with latent variables using regularized conditional likelihood.
Paper compares two methods for inferring network structures in presence of latent confounders.
AutoBayes automates Bayesian graph exploration for robust machine learning.
Rejoinder to "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Novel graphical models for time series with latent confounders improve causal inference.
Study provides selective inference method for latent block models.
Gaussian graphical models are widely utilized to infer and visualize networks of dependencies between continuous variables. However, inferring the graph is difficult when the sample size is small compared to the number of variables. To reduce the number of parameters to estimate in the model, we propose a non-asymptoti…
Graphical models use graphs to compactly capture stochastic dependencies amongst a collection of random variables. Inference over graphical models corresponds to finding marginal probability distributions given joint probability distributions. In general, this is computationally intractable, which has led to a quest fo…
A simple thresholding technique improves graph selection in neural connectivity studies.
Motivated by modern applications in which one constructs graphical models based on a very large number of features, this paper introduces a new class of cluster-based graphical models, in which variable clustering is applied as an initial step for reducing the dimension of the feature space. We employ model assisted cl…
Traditional learning methods for training Markov random fields require doing inference over all variables to compute the likelihood gradient. The iteration complexity for those methods therefore scales with the size of the graphical models. In this paper, we propose \emph{block belief propagation learning} (BBPL), whic…
We investigate probabilistic graphical models that allow for both cycles and latent variables. For this we introduce directed graphs with hyperedges (HEDGes), generalizing and combining both marginalized directed acyclic graphs (mDAGs) that can model latent (dependent) variables, and directed mixed graphs (DMGs) that c…
New taxonomy and improved solvers for discrete energy minimization.
Gaussian graphical models (GGM) have been widely used in many high-dimensional applications ranging from biological and financial data to recommender systems. Sparsity in GGM plays a central role both statistically and computationally. Unfortunately, real-world data often does not fit well to sparse graphical models. I…
Graphical models are a rich language for describing high-dimensional distributions in terms of their dependence structure. While there are algorithms with provable guarantees for learning undirected graphical models in a variety of settings, there has been much less progress in the important scenario when there are lat…
The latent Dirichlet allocation (LDA) model is a widely-used latent variable model in machine learning for text analysis. Inference for this model typically involves a single-site collapsed Gibbs sampling step for latent variables associated with observations. The efficiency of the sampling is critical to the success o…
Latent Block-Diffusion Temporal Point Processes (LBDTPP) is a semi-autoregressive framework for generating asynchronous event sequences.
New method controls latent variables in graphical models to improve causal inference and prediction.
New solver MPLP++ outperforms existing solvers for dense graph models.
The Bitcoin transaction graph is a public data structure organized as transactions between addresses, each associated with a logical entity. In this work, we introduce a complete probabilistic model of the Bitcoin Blockchain. We first formulate a set of conditional dependencies induced by the Bitcoin protocol at the bl…
Develops a method to identify causal effects in linear models with latent variables.
Learning general latent-variable probabilistic graphical models is a key theoretical challenge in machine learning and artificial intelligence. All previous methods, including the EM algorithm and the spectral algorithms, face severe limitations that largely restrict their applicability and affect their performance. In…
Paper models graph edge dependencies using latent variables for community detection.
Identifies causal effects in LiNGAM models with latent variables.
New neural network approach for optimizing latent variable models.
A novel MCMC method clusters data faster and more accurately.
We analyze the information-theoretic limits for the recovery of node labels in several network models. This includes the Stochastic Block Model, the Exponential Random Graph Model, the Latent Space Model, the Directed Preferential Attachment Model, and the Directed Small-world Model. For the Stochastic Block Model, the…
Proposes a Latent Block Model for analyzing missing data.
BEGIN network models binary data without parametric assumptions.
Latent block models are used for probabilistic biclustering, which is shown to be an effective method for analyzing various relational data sets. However, there has been no statistical test method for determining the row and column cluster numbers of latent block models. Recent studies have constructed statistical-test…
VFG model embeds flow-based models with hierarchical structures using variational inference.
We generalize the stochastic block model to the important case in which edges are annotated with weights drawn from an exponential family distribution. This generalization introduces several technical difficulties for model estimation, which we solve using a Bayesian approach. We introduce a variational algorithm that …
New method for mixed data types in graphical models.
Tests if vertices in graphs have the same latent positions.
A new model learns latent spaces for graph data.
This paper studies the partial estimation of Gaussian graphical models from high-dimensional empirical observations. We derive a convex formulation for this problem using -regularized maximum-likelihood estimation, which can be solved via a block coordinate descent algorithm. Statistical estimation performance …