arXiv research

The paper connects two clustering methods by showing gradient ascent flow can move up the cluster tree.

Hierarchical clustering is a popular method for analyzing data which associates a tree to a dataset. Hartigan consistency has been used extensively as a framework to analyze such clustering algorithms from a statistical point of view. Still, as we show in the paper, a tree which is Hartigan consistent with a given dens…

Defines hierarchical clustering axioms for various densities.

K-means fails catastrophically in high dimensions, Hartigan's avoids it.

The level set tree approach of Hartigan (1975) provides a probabilistically based and highly interpretable encoding of the clustering behavior of a dataset. By representing the hierarchy of data modes as a dendrogram of the level sets of a density estimator, this approach offers many advantages for exploratory analysis…

Finding the optimal $k$-means clustering is NP-hard in general and many heuristics have been designed for minimizing monotonically the $k$-means objective. We first show how to extend Lloyd's batched relocation heuristic and Hartigan's single-point relocation heuristic to take into account empty-cluster and single-poin…

Selective clustering annotated using modes of projections (SCAMP) is a new clustering algorithm for data in $\mathbb{R}^p$. SCAMP is motivated from the point of view of non-parametric mixture modeling. Rather than maximizing a classification likelihood to determine cluster assignments, SCAMP casts clustering as a searc…

Energy statistics was proposed by Sz\' ekely in the 80's inspired by Newton's gravitational potential in classical mechanics and it provides a model-free hypothesis test for equality of distributions. In its original form, energy statistics was formulated in Euclidean spaces. More recently, it was generalized to metric…

In this paper we introduce three methods for re-scaling data sets aiming at improving the likelihood of clustering validity indexes to return the true number of spherical Gaussian clusters with additional noise features. Our method obtains feature re-scaling factors taking into account the structure of a given data set…

In this paper we propose a mixture model, SparseMix, for clustering of sparse high dimensional binary data, which connects model-based with centroid-based clustering. Every group is described by a representative and a probability distribution modeling dispersion from this representative. In contrast to classical mixtur…

A new fuzzy clustering method using hyperbolic smoothing for large datasets.

Following Hartigan, a cluster is defined as a connected component of the t-level set of the underlying density, i.e., the set of points for which the density is greater than t. A clustering algorithm which combines a density estimate with spectral clustering techniques is proposed. Our algorithm is composed of two step…

Tree Index evaluates cluster quality by creating decision trees from data.

A cluster tree provides a highly-interpretable summary of a density function by representing the hierarchy of its high-density clusters. It is estimated using the empirical tree, which is the cluster tree constructed from a density estimator. This paper addresses the basic question of quantifying our uncertainty by ass…

Kauri is a novel unsupervised binary tree for clustering that outperforms existing methods.

Locally adaptive clustering for tree delineation.

A new k-means algorithm using cover trees accelerates clustering.

A new hierarchical clustering method selects representative points from sub-minimum-spanning-trees.

For a density $f$ on ${\mathbb R}^d$, a {\it high-density cluster} is any connected component of $\{x: f(x) \geq λ\}$, for some $λ> 0$. The set of all high-density clusters forms a hierarchy called the {\it cluster tree} of $f$. We present two procedures for estimating the cluster tree given samples from $f$. The first…

New clustering method recovers hidden tree structure from data.

ExKMC improves explainable $k$-means clustering by balancing accuracy and simplicity.

Many modern clustering methods scale well to a large number of data items, N, but not to a large number of clusters, K. This paper introduces PERCH, a new non-greedy algorithm for online hierarchical clustering that scales to both massive N and K--a problem setting we term extreme clustering. Our algorithm efficiently …

This paper introduces a new method to cluster qualitative attribute data using tree structures.

Improved BIRCH clustering method to avoid numeric issues.

New method embeds phylogenetic trees for clustering, recovering evolutionary relationships.

We describe $k$-MLE, a fast and efficient local search algorithm for learning finite statistical mixtures of exponential families such as Gaussian mixture models. Mixture models are traditionally learned using the expectation-maximization (EM) soft clustering technique that monotonically increases the incomplete (expec…

Interactive steering improves hierarchical clustering for diverse user needs.

A new classification method based on Minimum Spanning Trees

Nowadays, data are generated massively and rapidly from scientific fields as bioinformatics, neuroscience and astronomy to business and engineering fields. Cluster analysis, as one of the major data analysis tools, is therefore more significant than ever. We propose in this work an effective Semi-supervised Divisive Cl…

Biclustering structures in data matrices were first formalized in a seminal paper by John Hartigan (1972) where one seeks to cluster cases and variables simultaneously. Such structures are also prevalent in block modeling of networks. In this paper, we develop a unified theory for the estimation and completion of matri…

Clustering is a popular form of unsupervised learning for geometric data. Unfortunately, many clustering algorithms lead to cluster assignments that are hard to explain, partially because they depend on all the features of the data in a complicated way. To improve interpretability, we consider using a small decision tr…

Hierarchical structure is ubiquitous in data across many domains. There are many hierarchical clustering methods, frequently used by domain experts, which strive to discover this structure. However, most of these methods limit discoverable hierarchies to those with binary branching structure. This limitation, while com…

LILI clustering reduces bias in causal inference by grouping similar counterfactual outcomes.

We introduce block-tree graphs as a framework for deriving efficient algorithms on graphical models. We define block-tree graphs as a tree-structured graph where each node is a cluster of nodes such that the clusters in the graph are disjoint. This differs from junction-trees, where two clusters connected by an edge al…

t-SNE and hierarchical clustering are popular methods of exploratory data analysis, particularly in biology. Building on recent advances in speeding up t-SNE and obtaining finer-grained structure, we combine the two to create tree-SNE, a hierarchical clustering and visualization algorithm based on stacked one-dimension…

Lumbermark clusters data robustly, slicing limbs of mutual reachability trees.

TD-GEN generates graphs using tree decomposition, improving efficiency and performance.

We studied the topology of correlation networks among 34 major currencies using the concept of a minimal spanning tree and hierarchical tree for the full years of 2007-2008 when major economic turbulence occurred. We used the USD (US Dollar) and the TL (Turkish Lira) as numeraires in which the USD was the major currenc…

A recently proposed clustering method, called the Nearest Descent (ND), can organize the whole dataset into a sparsely connected graph, called the In-tree. This ND-based Intree structure proves able to reveal the clustering structure underlying the dataset, except one imperfect place, that is, there are some undesired …

A new method for hierarchical clustering using continuous embeddings and optimization.

A new clustering algorithm for functional data using binary trees.

We propose a hierarchical correlation clustering method that extends the well-known correlation clustering to produce hierarchical clusters applicable to both positive and negative pairwise dissimilarities. Then, in the following, we study unsupervised representation learning with such hierarchical correlation clusteri…

We propose a new outline for adaptive dictionary learning methods for sparse encoding based on a hierarchical clustering of the training data. Through recursive application of a clustering method, the data is organized into a binary partition tree representing a multiscale structure. The dictionary atoms are defined ad…

We propose a new anytime hierarchical clustering method that iteratively transforms an arbitrary initial hierarchy on the configuration of measurements along a sequence of trees we prove for a fixed data set must terminate in a chain of nested partitions that satisfies a natural homogeneity requirement. Each recursive …

A new method, tree-SNE, solves the scale problem in t-SNE.

Nearest neighbor (k-NN) graphs are widely used in machine learning and data mining applications, and our aim is to better understand what they reveal about the cluster structure of the unknown underlying distribution of points. Moreover, is it possible to identify spurious structures that might arise due to sampling va…

nTreeClus clusters categorical sequences using tree-based learners and k-mers.

New framework estimates staged tree models using hierarchical clustering on the probability simplex.