Graph Interplay (GIP) improves GSSL performance by enhancing graph-level communications.
problem Improving graph self-supervised learning performance without labeled data.
method Graph Interplay (GIP) introduces random inter-graph edges within standard batches to enhance GSSL methods.
result GIP significantly outperforms existing GSSL methods across multiple benchmarks.
This paper proposes a method to learn graph representations by partitioning edges into communities.
problem Graph neural networks ignore how edges are formed, leading to suboptimal representation learning.
method Introduces a generative model to partition edges into community-specific weighted edges, then uses these for GNN-based inference and classification.
result The method learns discriminative representations for both node-level and graph-level classification tasks.
Unified benchmark for GLAD and GLOD methods across 35 datasets.
problem Gap between GLAD and GLOD research due to distinct evaluation setups.
method Comprehensive evaluation framework that unifies GLAD and GLOD.
result Multi-dimensional analyses of existing methods' strengths and limitations.
This paper studies learning the representations of whole graphs in both unsupervised and semi-supervised scenarios. Graph-level representations are critical in a variety of real-world applications such as predicting the properties of molecules and community analysis in social networks. Traditional graph kernel based me…
Study compares hypergraph and graph-level models for higher-order relational learning.
problem Evaluating effectiveness of hypergraph-level vs. graph-level models in relational learning.
method Systematic evaluation of various hypergraph and graph-level architectures.
result Graph-level models applied to hypergraph expansions outperform hypergraph-level models.
We introduce a novel approach to graph-level representation learning, which is to embed an entire graph into a vector space where the embeddings of two graphs preserve their graph-graph proximity. Our approach, UGRAPHEMB, is a general framework that provides a novel means to performing graph-level embedding in a comple…
GraphPPD models graph-level uncertainty using GNN embeddings.
problem Capturing uncertainty in graph-level predictions.
method Variational modelling for posterior predictive distribution.
result Effective uncertainty-aware predictions on graph-level tasks.
Study reveals significant performance flips in GLOD using repurposed graph classification datasets.
problem Performance discrepancies in graph-level outlier detection using repurposed classification datasets.
method Repurposed binary classification datasets for GLOD; analyzed ROC-AUC performance.
result Performance of GLOD models significantly flips depending on which class is down-sampled.
Minimal graph level sets are concave if boundary is concave.
problem Understanding curvature of minimal graph level sets.
method Proved an inequality and showed geometric properties.
result Level sets of minimal graphs are concave if boundary is concave.
Predicating macroscopic influences of drugs on human body, like efficacy and toxicity, is a central problem of small-molecule based drug discovery. Molecules can be represented as an undirected graph, and we can utilize graph convolution networks to predication molecular properties. However, graph convolutional network…
PathBoost boosts graph-level predictions using path-based features.
problem Graph-level classification and regression challenges.
method Gradient tree boosting method for graph-level prediction.
result PathBoost outperforms graph neural networks and graph kernel approaches in many cases.
Extract common latent factors from graphs for better representation learning.
problem Graph-level representation learning challenges due to limited labeled data and poor negative sample selection.
method Graph-wise Common Latent Factor Extraction (GCFX) using deepGCFX model.
result Improved graph-level and node-level tasks performance compared to state-of-the-art methods.
SHAKE-GNN scales GNNs for large graphs with multi-scale representations.
problem Scaling Graph Neural Networks (GNNs) to large graphs.
method SHAKE-GNN uses a hierarchy of Kirchhoff Forests for stochastic multi-resolution graph decompositions.
result SHAKE-GNN achieves competitive performance on large-scale graph classification benchmarks.
This work presents a novel modeling and analysis framework for graph sequences which addresses the challenge of detecting and contextualizing anomalies in labelled, streaming graph data. We introduce a generalization of the BTER model of Seshadhri et al. by adding flexibility to community structure, and use this model …
Significant progress has been made using fMRI to characterize the brain changes that occur in ASD, a complex neuro-developmental disorder. However, due to the high dimensionality and low signal-to-noise ratio of fMRI, embedding informative and robust brain regional fMRI representations for both graph-level classificati…
Graph data widely exist in many high-impact applications. Inspired by the success of deep learning in grid-structured data, graph neural network models have been proposed to learn powerful node-level or graph-level representation. However, most of the existing graph neural networks suffer from the following limitations…
Recently a variety of methods have been developed to encode graphs into low-dimensional vectors that can be easily exploited by machine learning algorithms. The majority of these methods start by embedding the graph nodes into a low-dimensional vector space, followed by using some scheme to aggregate the node embedding…
Machine learning on graph structured data has attracted much research interest due to its ubiquity in real world data. However, how to efficiently represent graph data in a general way is still an open problem. Traditional methods use handcraft graph features in a tabular form but suffer from the defects of domain expe…
PiNet improves graph classification efficiency and accuracy.
problem Graph level classification challenges.
method Attention-based pooling mechanism for graph convolution operations.
result Superior performance and high sample efficiency.
Vulnerability identification is crucial to protect the software systems from attacks for cyber security. It is especially important to localize the vulnerable functions among the source code to facilitate the fix. However, it is a challenging and tedious process, and also requires specialized security expertise. Inspir…
SubGNN tackles subgraph prediction challenges in graphs.
problem Subgraphs in graphs are challenging to predict due to their internal topology and external connectivity.
method SubGNN introduces a novel subgraph routing mechanism to learn disentangled subgraph representations.
result SubGNN achieves considerable performance gains on subgraph classification tasks, outperforming strong baseline methods.
We propose an approach to learning with graph-structured data in the problem domain of graph classification. In particular, we present a novel type of readout operation to aggregate node features into a graph-level representation. To this end, we leverage persistent homology computed via a real-valued, learnable, filte…
PatchGT uses non-trainable graph patches to improve graph representation learning.
problem Learning high-level information in graph tasks with direct Transformer models.
method PatchGT segments graphs into non-trainable patches, uses GNN for patch-level learning, and Transformer for graph-level learning.
result PatchGT achieves higher expressiveness and competitive performance on benchmark datasets.
AWARE improves graph prediction by aggregating walks with attention schemes.
problem Improving graph prediction accuracy using walk aggregation.
method Integrates attention schemes into walk-aggregating GNNs.
result AWARE outperforms existing methods in graph-level prediction tasks.
A new aggregation strategy improves GNN performance and learning dynamics.
problem Improving expressivity and learning dynamics of GNNs.
method Proposes a variance-preserving aggregation function (VPA) for GNNs.
result VPA leads to increased predictive performance and improved learning dynamics.
Graph Kalman filters adapt classical filters to graph data.
problem Adapting classical Kalman filters to graph data.
method Generalizes Kalman filters to attributed graphs, learning state-transition and readout functions end-to-end.
result Adapted Kalman filters can predict graph outputs.
CHILI datasets tackle inorganic nanomaterials, advancing graph machine learning.
problem Challenges in modelling inorganic crystalline materials and nanomaterials with graph ML.
method Presented two large-scale datasets of inorganic nanomaterials, defined property and structure prediction tasks.
result Benchmarked performance of graph ML methods on inorganic nanomaterials, highlighting areas for future work.
GraphToken encodes structured data for LLMs, improving graph reasoning tasks.
problem Efficiently encoding structured data for large language models.
method GraphToken learns an encoding function to extend prompts with explicit structured information.
result Significant improvements across node, edge, and graph-level tasks on the GraphQA benchmark.
Deep learning on graph structures has shown exciting results in various applications. However, few attentions have been paid to the robustness of such models, in contrast to numerous research work for image or text adversarial attack and defense. In this paper, we focus on the adversarial attacks that fool the model by…
Characterizes graphs with leveled embeddings and introduces new graph invariants.
problem Understanding the properties of leveled embeddings in spatial graphs.
method Characterization of graphs with leveled embeddings, introduction of new invariants.
result Characterization of graphs with low level number and determination of specific invariants for complete graphs and complete bipartite graphs.
GraphBench creates a unified benchmark for graph learning tasks.
problem Fragmented benchmarking practices and inconsistent evaluation protocols in graph learning.
method Developed a comprehensive benchmark suite with standardized evaluation protocols.
result Established principled baselines for future research in graph learning.
SpeqNets improve graph neural networks by scaling and adapting to graph sparsity.
problem Graph neural networks struggle with permutation-equivariant functions and scalability to large graphs.
method Introducing sparsity-aware, permutation-equivariant graph networks with heuristics for graph isomorphism.
result Significantly improved predictive performance and reduced computation times compared to existing methods.
New approach learns graph representations by contrasting first-order neighbors and graph diffusion views.
problem Learning node and graph level representations from graph data.
method Self-supervised approach using contrastive learning of multi-scale encodings.
result Achieves state-of-the-art performance on 8 out of 8 benchmarks.
A new framework maximizes influence spread in social networks by accounting for inter-community diffusion.
problem Real-world social networks have inter-community influence that is often overlooked in community-based IM approaches.
method Community-IM++ uses a heuristic based on community-based diffusion degree and progressive budgeting to model and prioritize cross-community diffusion.
result Community-IM++ achieves near-greedy influence spread at up to 100 times lower runtime than existing methods.
WEGL embeds graphs in a vector space for faster machine learning.
problem Efficiently embedding graphs for machine learning tasks.
method Wasserstein distance for node embedding similarity, Monge maps for graph representation.
result State-of-the-art classification performance with superior computational efficiency.
We introduce the concept of community trees that summarizes topological structures within a network. A community tree is a tree structure representing clique communities from the clique percolation method (CPM). The community tree also generates a persistent diagram. Community trees and persistent diagrams reveal topol…
AgentNet is a graph neural network that learns to walk graphs intelligently, outperforming traditional methods.
problem Graph-level tasks, especially distinguishing and classifying graphs.
method AgentNet uses a computational model inspired by sublinear algorithms, where neural agents walk the graph and collectively decide the output.
result AgentNet can distinguish and separate graphs that are hard to distinguish, outperforming traditional graph neural networks.
Propagation-regularization improves GNN performance by infusing extra graph information.
problem The effectiveness of graph Laplacian regularization in GNNs is questioned and improved upon.
method Introducing Propagation-regularization (P-reg) to enhance GNN performance.
result P-reg boosts GNN performance on various tasks across multiple datasets.
Community detection improves stock market portfolio optimization.
problem Improving portfolio optimization in financial markets.
method Community detection in correlation-based networks of worldwide stock markets.
result Portfolios constructed using community detection outperform traditional methods.
We introduce a new paradigm that is important for community detection in the realm of network analysis. Networks contain a set of strong, dominant communities, which interfere with the detection of weak, natural community structure. When most of the members of the weak communities also belong to stronger communities, t…
Study exact community detection in k-community Gaussian mixtures with different intensities.
problem Community detection in k-community Gaussian mixtures with varying intensities.
method Explicitly find the threshold for exact recovery of maximum likelihood estimation.
result Threshold for exact recovery of maximum likelihood estimation is identified.
The paper introduces a method for detecting principal communities and embedding vertices.
problem Detecting and embedding vertices in graphs with community structure.
method Principal graph encoder embedding method that detects principal communities and produces vertex embeddings.
result The method successfully detects principal communities and produces accurate vertex embeddings.
SLIM model tackles graph classification by resolving part-interaction dilemmas.
problem Difficulty in modeling graph parts and their interactions in graph classification.
method SLIM model, which solves resolution dilemmas and leverages explicit interactions.
result SLIM offers improved interpretability, accuracy, and new insights in graph representation learning.
Improved distributed learning with reduced communication costs.
problem Efficient communication in resource-constrained environments for distributed learning.
method Proposed a cost-effective partial communication protocol.
result Communication cost is reduced to O(logT), improving significantly on full communication. Statistical estimates can often be improved by fusion of data from several different sources. One example is so-called ensemble methods which have been successfully applied in areas such as machine learning for classification and clustering. In this paper, we present an ensemble method to improve community detection by…
iGCL preserves graph semantics in latent space augmentations.
problem Manual tuning of augmentation ratios and unexpected graph changes.
method iGCL uses a Variational Graph Auto-Encoder to learn augmentations in the latent space, optimizing an upper bound for contrastive loss.
result iGCL achieves state-of-the-art performance on graph-level and node-level tasks.
MACC learns communication protocols by adapting counterfactual reasoning.
problem Credit assignment and non-stationarity in communication environments.
method Adapts counterfactual reasoning to overcome credit assignment and uses action policy and Q-function of other agents to handle non-stationarity.
result MACC outperforms state-of-the-art baselines in four scenarios.
A novel framework for adaptive multi-agent communication in reinforcement learning.
problem Manual specification of communication structures in multi-agent reinforcement learning.
method Learning Structured Communication (LSC) framework using hierarchical graph neural networks.
result Adaptive hierarchical formations and efficient message propagation among agents.