arXiv research

Bayesian approach improves network lasso for multi-task learning.

The Bayesian Lasso is constructed in the linear regression framework and applies the Gibbs sampling to estimate the regression parameters. This paper develops a new sparse learning model, named the Bayesian Lasso Sparse (BLS) model, that takes the hierarchical model formulation of the Bayesian Lasso. The main differenc…

Scalable Bayesian LASSO using variational inference for large p and n.

The fused lasso penalizes a loss function by the $L_1$ norm for both the regression coefficients and their successive differences to encourage sparsity of both. In this paper, we propose a Bayesian generalized fused lasso modeling based on a normal-exponential-gamma (NEG) prior distribution. The NEG prior is assumed in…

High-dimensional feature selection arises in many areas of modern science. For example, in genomic research we want to find the genes that can be used to separate tissues of different classes (e.g. cancer and normal) from tens of thousands of genes that are active (expressed) in certain tissue cells. To this end, we wi…

In this article, we propose a new class of priors for Bayesian inference with multiple Gaussian graphical models. We introduce fully Bayesian treatments of two popular procedures, the group graphical lasso and the fused graphical lasso, and extend them to a continuous spike-and-slab framework to allow self-adaptive shr…

MicroRNAs (miRNAs) are small RNA molecules composed of 19-22 nt, which play important regulatory roles in post-transcriptional gene regulation by inhibiting the translation of the mRNA into proteins or otherwise cleaving the target mRNA. Inferring miRNA targets provides useful information for understanding the roles of…

PliableBVS extends Bayesian lasso for modeling interactions with modifying variables.

Bayesian method improves portfolio management with limited data.

New method reduces bias in sparse Bayesian learning.

Complex network reconstruction is a hot topic in many fields. Currently, the most popular data-driven reconstruction framework is based on lasso. However, it is found that, in the presence of noise, lasso loses efficiency for weighted networks. This paper builds a new framework to cope with this problem. The key idea i…

Bayesian pliable lasso with horseshoe prior models interactions in GLMs with missing data.

New method corrects selection bias in post-selective inference for Group LASSO.

Bayesian GAMs improve predictive performance for high-dimensional data.

Study evaluates scikit-learn regularization frameworks for machine learning models.

A reciprocal LASSO (rLASSO) regularization employs a decreasing penalty function as opposed to conventional penalization approaches that use increasing penalties on the coefficients, leading to stronger parsimony and superior model selection relative to traditional shrinkage methods. Here we consider a fully Bayesian f…

We investigate the choice of tuning parameters for a Bayesian multi-level group lasso model developed for the joint analysis of neuroimaging and genetic data. The regression model we consider relates multivariate phenotypes consisting of brain summary measures (volumetric and cortical thickness values) to single nucleo…

Novel Bayesian method for high-dimensional count data prediction.

We consider a joint processing of $n$ independent sparse regression problems. Each is based on a sample $(y_{i1},x_{i1})...,(y_{im},x_{im})$ of $m$ \iid observations from $y_{i1}=x_{i1}\tβ_i+\eps_{i1}$, $y_{i1}\in \R$, $x_{i 1}\in\R^p$, $i=1,...,n$, and $\eps_{i1}\dist N(0,\sig^2)$, say. $p$ is large enough so that the…

We describe a simple, efficient, permutation based procedure for selecting the penalty parameter in the LASSO. The procedure, which is intended for applications where variable selection is the primary focus, can be applied in a variety of structural settings, including generalized linear models. We briefly discuss conn…

The thesis tackles structure learning and parameter estimation for PGMs using penalized maximum likelihood methods.

Random forests and LASSO methods improve small area estimation using auxiliary data.

Bayesian method for estimating functional graphical models from neuroimaging data.

In this paper, we consider modelling interaction between a set of variables in the context of time series and high dimension. We suggest two approaches. The first is similar to the neighborhood lasso when the lasso model is replaced by a support vector machine (SVMs). The second is a restricted Bayesian network adapted…

Bayesian Tobit model tackles high-dimensional censored data with Horseshoe prior.

Bayesian method discovers PDEs with variable coefficients robustly.

New method recovers relative rates in spatial compositional data from IMS.

Paper proposes new Bayesian neural network models for efficient learning.

Statistical models with constrained probability distributions are abundant in machine learning. Some examples include regression models with norm constraints (e.g., Lasso), probit, many copula models, and latent Dirichlet allocation (LDA). Bayesian inference involving probability distributions confined to constrained d…

Discovering interaction effects on a response of interest is a fundamental problem faced in biology, medicine, economics, and many other scientific disciplines. In theory, Bayesian methods for discovering pairwise interactions enjoy many benefits such as coherent uncertainty quantification, the ability to incorporate b…

Bayesian transfer learning improves predictive performance with limited source data.

A new method learns DAG structures from data without false edges.

Sparse convex clustering is to cluster observations and conduct variable selection simultaneously in the framework of convex clustering. Although a weighted $L_1$ norm is usually employed for the regularization term in sparse convex clustering, its use increases the dependence on the data and reduces the estimation acc…

HALO learns to prune neural networks by adaptively shrinking weights.

For large scale on-line inference problems the update strategy is critical for performance. We derive an adaptive scan Gibbs sampler that optimizes the update frequency by selecting an optimum mini-batch size. We demonstrate performance of our adaptive batch-size Gibbs sampler by comparing it against the collapsed Gibb…

A new framework detects changepoints in complex data.

One of the fundamental tasks of science is to find explainable relationships between observed phenomena. One approach to this task that has received attention in recent years is based on probabilistic graphical modelling with sparsity constraints on model structures. In this paper, we describe two new approaches to Bay…

A common strategy for sparse linear regression is to introduce regularization, which eliminates irrelevant features by letting the corresponding weights be zeros. However, regularization often shrinks the estimator for relevant features, which leads to incorrect feature selection. Motivated by the above-mentioned issue…

We analyze mixing times of three DA algorithms for regression models.

ADVI speeds up Bayesian inference for bridge regression models.

The efficacy of family-based approaches to mixture model-based clustering and classification depends on the selection of parsimonious models. Current wisdom suggests the Bayesian information criterion (BIC) for mixture model selection. However, the BIC has well-known limitations, including a tendency to overestimate th…

PLS-Lasso integrates dimension reduction into regression for financial index tracking.

The paper examines Adaptive Lasso and Transfer Lasso, highlighting their differences and proposing a new method.

Bayesian autoencoders discover physics from noisy data.

Bayesian model improves cure fraction estimation in survival analysis.

Clustering with variable selection is a challenging yet critical task for modern small-n-large-p data. Existing methods based on sparse Gaussian mixture models or sparse K-means provide solutions to continuous data. With the prevalence of RNA-seq technology and lack of count data modeling for clustering, the current pr…

DFR reduces the computational cost of sparse-group lasso and adaptive sparse-group lasso.

A fast method for Lasso and Logistic Lasso problems.