A locally-built, LLM-digested index of recent arXiv papers in quant finance, geometry/topology, and statistical ML — keyword search served straight from SQLite on this machine.
3D U-Net improves kidney and tumor segmentation from CT scans.
Deep learning has shown its great promise in various biomedical image segmentation tasks. Existing models are typically based on U-Net and rely on an encoder-decoder architecture with stacked local operators to aggregate long-range information gradually. However, only using the local operators limits the efficiency and…
In this work we reduce undersampling artefacts in two-dimensional () golden-angle radial cine cardiac MRI by applying a modified version of the U-net. We train the network on spatio-temporal slices which are previously extracted from the image sequences. We compare our approach to two and a Deep Lear…
Automated detection of MS lesions improves to 67% with 7T MRI.
In this paper, a neural architecture search (NAS) framework is proposed for 3D medical image segmentation, to automatically optimize a neural architecture from a large design space. Our NAS framework searches the structure of each layer including neural connectivities and operation types in both of the encoder and deco…
Deep neural network models used for medical image segmentation are large because they are trained with high-resolution three-dimensional (3D) images. Graphics processing units (GPUs) are widely used to accelerate the trainings. However, the memory on a GPU is not large enough to train the models. A popular approach to …
Kidney tumor segmentation emerges as a new frontier of computer vision in medical imaging. This is partly due to its challenging manual annotation and great medical impact. Within the scope of the Kidney Tumor Segmentation Challenge 2019, that is aiming at combined kidney and tumor segmentation, this work proposes a no…
Deep learning network matches radiologists in breast cancer segmentation.
Quantitative susceptibility mapping (QSM) is a powerful MRI technique that has shown great potential in quantifying tissue susceptibility in numerous neurological disorders. However, the intrinsic ill-posed dipole inversion problem greatly affects the accuracy of the susceptibility map. We propose QSMGAN: a 3D deep con…
Accurate volume segmentation from the Computed Tomography (CT) scan is a common prerequisite for pre-operative planning, intra-operative guidance and quantitative assessment of therapeutic outcomes in robot-assisted Minimally Invasive Surgery (MIS). 3D Deep Convolutional Neural Network (DCNN) is a viable solution for t…
Convolutional neural networks are state-of-the-art for various segmentation tasks. While for 2D images these networks are also computationally efficient, 3D convolutions have huge storage requirements and therefore, end-to-end training is limited by GPU memory and data size. To overcome this issue, we introduce a netwo…
Unified framework for U-Net design and analysis.
U-Net trained to recover acoustic interference striations from distorted data.
The segmentation of the breast from the chest wall is an important first step in the analysis of breast magnetic resonance images. 3D U-nets have been shown to obtain high segmentation accuracy and appear to generalize well when trained on one scanner type and tested on another scanner, provided that a very similar T1-…
Modern weather forecast models perform uncertainty quantification using ensemble prediction systems, which collect nonparametric statistics based on multiple perturbed simulations. To provide accurate estimation, dozens of such computationally intensive simulations must be run. We show that deep neural networks can be …
U-Nets use belief propagation for efficient image denoising and classification.
We study the use of knowledge distillation to compress the U-net architecture. We show that, while standard distillation is not sufficient to reliably train a compressed U-net, introducing other regularization methods, such as batch normalization and class re-weighting, in knowledge distillation significantly improves …
The paper reformulates U-Nets as wavelet-based models and applies this to hierarchical VAEs.
Retinal vessel segmentation is an essential step for fundus image analysis. With the recent advances of deep learning technologies, many convolutional neural networks have been applied in this field, including the successful U-Net. In this work, we firstly modify the U-Net with functional blocks aiming to pursue higher…
Improves U-Net for scale equivariance in semantic segmentation.
Deep learning models trained on adult cardiac MRI data struggle to accurately segment rare congenital heart diseases.
We propose a method based on deep learning to perform cardiac segmentation on short axis MRI image stacks iteratively from the top slice (around the base) to the bottom slice (around the apex). At each iteration, a novel variant of U-net is applied to propagate the segmentation of a slice to the adjacent slice below it…
X-ray computed tomography (CT) using sparse projection views is a recent approach to reduce the radiation dose. However, due to the insufficient projection views, an analytic reconstruction approach using the filtered back projection (FBP) produces severe streaking artifacts. Recently, deep learning approaches using la…
White matter hyperintensity (WMH) is commonly found in elder individuals and appears to be associated with brain diseases. U-net is a convolutional network that has been widely used for biomedical image segmentation. Recently, U-net has been successfully applied to WMH segmentation. Random initialization is usally used…
In this paper, we present UNet++, a new, more powerful architecture for medical image segmentation. Our architecture is essentially a deeply-supervised encoder-decoder network where the encoder and decoder sub-networks are connected through a series of nested, dense skip pathways. The re-designed skip pathways aim at r…
This study improves lung tumor segmentation in mice MRI scans with nnU-Net, reducing annotation needs.
Singing Voice Separation (SVS) tries to separate singing voice from a given mixed musical signal. Recently, many U-Net-based models have been proposed for the SVS task, but there were no existing works that evaluate and compare various types of intermediate blocks that can be used in the U-Net architecture. In this pap…
In recent years, deep learning has surpassed traditional approaches to the problem of singing voice separation. The Wave-U-Net is a recent deep network architecture that operates directly on the time domain. The standard Wave-U-Net is trained with data augmentation and early stopping to prevent overfitting. Minimum hyp…
A new method predicts precipitation distributions from ensemble forecasts.
Neural net reconstructs dark matter density from halo velocities.
Deep learning speeds up pressure prediction in carbon storage reservoirs.
Background: Three-dimensional, whole heart, balanced steady state free precession (WH-bSSFP) sequences provide delineation of intra-cardiac and vascular anatomy. However, they have long acquisition times. Here, we propose significant speed ups using a deep learning single volume super resolution reconstruction, to reco…
A new method for feature fusion in U-Net decoders using difference-based gating.
Ultrasound (US) is the most widely used fetal imaging technique. However, US images have limited capture range, and suffer from view dependent artefacts such as acoustic shadows. Compounding of overlapping 3D US acquisitions into a high-resolution volume can extend the field of view and remove image artefacts, which is…
Convolutional neural networks (CNNs) with dilated filters such as the Wavenet or the Temporal Convolutional Network (TCN) have shown good results in a variety of sequence modelling tasks. However, efficiently modelling long-term dependencies in these sequences is still challenging. Although the receptive field of these…
Sound source separation has attracted attention from Music Information Retrieval(MIR) researchers, since it is related to many MIR tasks such as automatic lyric transcription, singer identification, and voice conversion. In this paper, we propose an intuitive spectrogram-based model for source separation by adapting U-…
CAggNet improves medical image segmentation by fusing coarse and fine features.
Models for audio source separation usually operate on the magnitude spectrum, which ignores phase information and makes separation performance dependant on hyper-parameters for the spectral front-end. Therefore, we investigate end-to-end source separation in the time-domain, which allows modelling phase information and…
This paper explains the method used in the segmentation challenge (Task 1) in the International Skin Imaging Collaboration's (ISIC) Skin Lesion Analysis Towards Melanoma Detection challenge held in 2018. We have trained a U-Net network to perform the segmentation. The key elements for the training were first to adjust …
Traditional human activity recognition (HAR) based on time series adopts sliding window analysis method. This method faces the multi-class window problem which mistakenly labels different classes of sampling points within a window as a class. In this paper, a HAR algorithm based on U-Net is proposed to perform activity…
Graph refinement, or the task of obtaining subgraphs of interest from over-complete graphs, can have many varied applications. In this work, we extract trees or collection of sub-trees from image data by, first deriving a graph-based representation of the volumetric data and then, posing the tree extraction as a graph …
Tract-specific diffusion measures, as derived from brain diffusion MRI, have been linked to white matter tract structural integrity and neurodegeneration. As a consequence, there is a large interest in the automatic segmentation of white matter tract in diffusion tensor MRI data. Methods based on the tractography are p…
Proposes a new deep learning model for uncertainty quantification and propagation.
The U-net is a deep-learning network model that has been used to solve a number of inverse problems. In this work, the concatenation of two-element U-nets, termed the W-net, operating in k-space (K) and image (I) domains, were evaluated for multi-channel magnetic resonance (MR) image reconstruction. The two element net…
Differentiable pipeline replaces non-differentiable CAE components for shape optimization.
Deep Convolutional Neural Networks (DCNNs) are used extensively in medical image segmentation and hence 3D navigation for robot-assisted Minimally Invasive Surgeries (MISs). However, current DCNNs usually use down sampling layers for increasing the receptive field and gaining abstract semantic information. These down s…
Study develops a new tool for assessing asphalt pavement conditions using deep learning.
Most deep learning-based models for speech enhancement have mainly focused on estimating the magnitude of spectrogram while reusing the phase from noisy speech for reconstruction. This is due to the difficulty of estimating the phase of clean speech. To improve speech enhancement performance, we tackle the phase estima…