Sampling random points can reveal submanifold topology.
problem Estimating the topology of submanifolds in Riemannian manifolds.
method Sampling random points in a neighborhood of the submanifold.
result Topology of the submanifold can be recovered with high confidence.
EuLearn creates diverse 3D topological datasets for machine learning.
problem Training machine learning systems to discern topological features.
method Developed novel sampling and neural network architectures for graph and manifold data.
result Incorporating topological information improves deep learning performance on EuLearn datasets.
Study evaluates synthetic data augmentation for small datasets, highlighting inconsistencies in traditional metrics.
problem Inconsistent validation of synthetic data generated for small sample sizes.
method Proposes a normalized Bottleneck distance metric to evaluate synthetic tabular data.
result Common metrics like propensity scoring and MMD fail for small datasets, showing instability and high variability.
Study shows topological features improve time series classification.
problem Classifying stochastic processes with varying noise and sampling.
method Topological data analysis features compared to statistical and raw features.
result Topological features lead to better classification performance.
ARTree uses deep learning to infer tree topologies efficiently.
problem Efficient phylogenetic inference from tree topologies.
method Deep autoregressive model based on graph neural networks (GNNs).
result ARTree provides a flexible family of distributions over tree topologies.
Topological constraints improve neural network generalization.
problem Improving generalization in neural networks with limited data.
method Imposing topological constraints on internal representations of neural networks.
result Topological constraints lead to better mass concentration around training instances, improving generalization.
IVFS simplifies feature selection for high-dimensional data preservation.
problem Maintaining structure and pairwise distances in high-dimensional data.
method IVFS framework based on persistent diagrams from computational topology.
result IVFS well preserves pairwise distances and topological patterns of full data.
In this study, a novel topology optimization approach based on conditional Wasserstein generative adversarial networks (CWGAN) is developed to replicate the conventional topology optimization algorithms in an extremely computationally inexpensive way. CWGAN consists of a generator and a discriminator, both of which are…
Paper uses diffusion models to design electric aircraft quickly.
problem Designing electric aircraft efficiently and accurately.
method Simulation-based inference with hierarchical diffusion models.
result Rediscovers known aircraft design trends and laws.
Study shows effective resistance distance yields more accurate network barycenter than Hamming distance.
problem Identifying the best metric for computing the Fréchet mean network.
method Compared the effectiveness of Hamming distance and effective resistance distance in capturing network topology.
result Effective resistance distance produces a more accurate Fréchet mean network.
In this paper, we exploit minimal sensing information gathered from biologically inspired sensor networks to perform exploration and mapping in an unknown environment. A probabilistic motion model of mobile sensing nodes, inspired by motion characteristics of cockroaches, is utilized to extract weak encounter informati…
Combines geometry and topology for analyzing hierarchical datasets.
problem Analyzing complex, hierarchical datasets with irregular structures.
method Combines manifold learning and topological data analysis.
result Superior classification results compared to state-of-the-art methods.
Topological data analysis (TDA) has emerged as one of the most promising techniques to reconstruct the unknown shapes of high-dimensional spaces from observed data samples. TDA, thus, yields key shape descriptors in the form of persistent topological features that can be used for any supervised or unsupervised learning…
This work introduces novel methods to identify and compare cycles across topological objects.
problem Identifying and comparing topological features, particularly cycles, across different topological objects.
method Two complementary approaches: dendrogram-based merge-tree algorithms and Stratified Gradient Sampling.
result Transformed cycle matching into hierarchical clustering and topological optimization framework.
Deep learning enhances Hamiltonian Monte Carlo for sampling gauge field configurations.
problem Sampling from complex gauge field topologies efficiently.
method Stacked neural networks to generalize Hamiltonian Monte Carlo.
result Significantly reduces computational cost for generating gauge field configurations.
Study topological invariants of complexes for Riemannian manifolds.
problem Understanding topological properties of Riemannian manifolds.
method Analyzing Betti numbers and Euler characteristic of Vietoris-Rips and Čech complexes.
result Betti curve converges to manifold's Betti number within a scale parameter interval.
Unified toolkit for comparing neural representations using SRTD and NTS.
problem Heuristic asymmetry and unbounded scores in existing divergences.
method Developed SRTD and NTS to address these issues.
result Unified, robust, and scale-invariant metric for comparing neural representations.
Topology guidance controls generative model outputs by specifying topological features.
problem Lack of control in generative models for visual analysis.
method Coupling a coordinate-based neural network with a diffusion model to guide sampling.
result Generated fields adhere to specified topological features while staying within the generative distribution.
The paper explores statistical and topological properties of sliced probability divergences.
problem Understanding the topological, statistical, and computational consequences of slicing divergences.
method Deriving theoretical properties of sliced probability divergences, including metric axioms preservation and weak continuity.
result Sliced divergences share similar topological properties and have stable sample complexity.
The paper studies the convergence of SAA for systemic risk measures.
problem Theoretical convergence of SAA for set-valued systemic risk measures.
method General theory and specific case study with mixed-integer programming formulations.
result Theoretical convergence results for SAA under Wijsman and Hausdorff topologies.
Neural nets learn robust geometric data representations.
problem Ensuring neural networks are robust to adversarial attacks.
method Topological Data Analysis via persistence diagrams, Lipschitz stability.
result Certified ε-robustness on ORBIT5K dataset. New model learns from random graph samples to estimate graph parameters.
problem Scalability issues in graph learning methods for large graphs.
method Develops a graph classification model working on randomly sampled subgraphs.
result Validates mini-batch learning on graphs and provides generalization bounds.
Estimates network topologies from shared graphon models across different networks.
problem Estimating the topology of multiple networks from nodal observations.
method Combining maximum likelihood penalty with graphon estimation schemes.
result Validated performance against competing methods in synthetic and real-world datasets.
Machine learning models for repeated measurements are limited. Using topological data analysis (TDA), we present a classifier for repeated measurements which samples from the data space and builds a network graph based on the data topology. When applying this to two case studies, accuracy exceeds alternative models wit…
Paper tackles few-shot class-incremental learning with a neural gas network.
problem Incrementally learn new classes from very few labelled samples without forgetting old classes.
method Proposes TOPIC framework using a neural gas network to preserve class topology and adapt to new samples.
result Significantly outperforms other methods on CIFAR100, miniImageNet, and CUB200 datasets.
Topological Flow Matching: A Generative Modeling Framework for Structured Spaces
problem Handling structured spaces in generative modeling
method Introducing topological flow matching
result Captures the structure of the underlying domain while preserving desirable properties
We implement methods from computational homology to obtain a topological signal of singularity formation in a selection of geometries evolved numerically by Ricci flow. Our approach, based on persistent homology, produces precise, quantitative measures describing the behavior of an entire collection of data across a di…
Data samples collected for training machine learning models are typically assumed to be independent and identically distributed (iid). Recent research has demonstrated that this assumption can be problematic as it simplifies the manifold of structured data. This has motivated different research areas such as data poiso…
PhyloVAE learns tree topologies without supervision.
problem Learning accurate tree representations from evolutionary data.
method Unsupervised learning via variational autoencoders with efficient tree generation.
result PhyloVAE generates high-resolution tree topologies efficiently.
Paper speeds up topological signal identification and cycle matching.
problem Efficiently identifying and matching topological signals across datasets.
method Cohomological approach to persistent homology computation.
result Significantly faster performance on large-scale datasets.
We present an algorithm for learning a latent variable generative model via generative adversarial learning where the canonical uniform noise input is replaced by samples from a graphical model. This graphical model is learned by a Boltzmann machine which learns low-dimensional feature representation of data extracted …
HLTF generates chemically valid 3D molecules with improved topology control.
problem Generating chemically valid 3D molecules is challenging due to bond topology errors.
method HLTF uses a latent multi-scale plan for global context and a constraint-aware sampler to suppress topology-driven failures.
result HLTF achieves high validity and uniqueness on QM9 and GEOM-DRUGS datasets.
Network sampling is integral to the analysis of social, information, and biological networks. Since many real-world networks are massive in size, continuously evolving, and/or distributed in nature, the network structure is often sampled in order to facilitate study. For these reasons, a more thorough and complete unde…
Flexible outlier detection using graph communities for robust performance.
problem Outlier detection in small sample size unbalanced problems.
method Local measure of label heterogeneity in a weighted graph topology.
result Overall outperforms local and global strategies in multi and single view settings.
Generative Topological Networks (GTNs) simplify latent space generation.
problem Complex latent space generation in generative models.
method GTNs use topology theory for a simple, supervised learning approach.
result GTNs improve upon VAEs and converge quickly, generating realistic samples.
New method for inferring network topology from partial data.
problem Inferring network topology from limited node data.
method Vector autoregressive model and Gaussian mixture algorithm.
result The proposed method converges to the network combination matrix in probability.
With the rapid adoption of machine learning techniques for large-scale applications in science and engineering comes the convergence of two grand challenges in visualization. First, the utilization of black box models (e.g., deep neural networks) calls for advanced techniques in exploring and interpreting model behavio…
We propose two related unsupervised clustering algorithms which, for input, take data assumed to be sampled from a uniform distribution supported on a metric space X, and output a clustering of the data based on the selection of a topological model for the connected components of X. Both algorithms work by selectin…
Proposes faster neural network learning by using subsets of training data.
problem Manual design and validation of network topologies is time-consuming.
method Exploits subsets of training data at each incremental training step and performs online hyperparameter selection.
result Significantly reduces overall training time while maintaining performance.
A new model for graph sampling that preserves structure without explicit targeting.
problem Graphs are often not fully representative of true relationships, leading to biased machine learning models.
method Node copying model: randomly replaces each node's neighbors with those of a randomly sampled similar node.
result The model achieves higher accuracy in node classification and mitigates adversarial attacks.
Bayesian method infers network topology and dynamics from noisy, sparse measurements.
problem Learning network topology and dynamics from partial, noisy data.
method Developed method uses dynamical structure functions derived from linear stochastic differential equations.
result Method outperforms state-of-the-art methods in various network types.
Improved phylogenetic inference using VBPI-Mixtures for tree topology and branch length.
problem Multimodality of tree-topology posterior distributions in phylogenetic inference.
method VBPI-Mixtures algorithm that uses mixture learning within the BBVI framework.
result VBPI-Mixtures captures tree-topology distributions better than VBPI.
New method detects uncertainty in neural networks for out-of-distribution detection.
problem Detecting out-of-distribution inputs to ensure model reliability.
method Predictive topological uncertainty (pTU) based on persistent homology.
result pTU provides a statistical framework for OOD detection.
We present a new family of zero-field Ising models over N binary variables/spins obtained by consecutive "gluing" of planar and O(1)-sized components and subsets of at most three vertices into a tree. The polynomial-time algorithm of the dynamic programming type for solving exact inference (computing partition func…
The topological information is essential for studying the relationship between nodes in a network. Recently, Network Representation Learning (NRL), which projects a network into a low-dimensional vector space, has been shown their advantages in analyzing large-scale networks. However, most existing NRL methods are desi…
In the aftermath of the financial crisis, the growing literature on financial networks has widely documented the predictive power of topological characteristics (e.g. degree centrality measures) to explain the systemic impact or systemic vulnerability of financial institutions. In this work, we show that considering al…
SOM-VQ tokenizes discrete models with semantic structure and navigable topology.
problem Lack of semantic structure in vector quantized representations limits interpretable human control.
method Combines vector quantization with Self-Organizing Maps to learn discrete codebooks with explicit topology.
result SOM-VQ produces more learnable token sequences and provides an explicit navigable geometry in code space.
Recent studies classify the topology of proteins by analysing the distribution of their projections using knotoids. The approximation of this distribution depends on the number of projection directions that are sampled. Here we investigate the relation between knotoids differing only by small perturbations of the direc…