Introduces topological deep learning for neural network classification problems.
problem Classifying neural networks using minimal topological structures.
method Formalizes classification problems in a topological setting.
result Demonstrates conditions for the feasibility of classification problems in neural networks.
In this empirical paper, we investigate how learning agents can be arranged in more efficient communication topologies for improved learning. This is an important problem because a common technique to improve speed and robustness of learning in deep reinforcement learning and many other machine learning algorithms is t…
This paper proposes a new method for learning covers of geometric datasets to improve topological inference and visualization.
problem Improving topological inference and visualization of large-scale geometric datasets.
method Proposes a method for learning topologically-faithful covers of geometric datasets using optimization.
result Simplicial complexes obtained from learned covers outperform standard methods in terms of size and representation of large-scale topology.
Topology aids in solving machine learning classification problems.
problem Machine learning classification problems.
method Classical topology applied to neural networks.
result Topology guides neural network architecture and training.
This review explores TDA and TDL beyond persistent homology.
problem Limitations of persistent homology in capturing topological invariants and homotopic evolution.
method Spectral representations, sheaf theory, Mayer topology, interaction topology, differential topology, geometric topology.
result Review of topological tools for various data types.
Novel algorithm learns sparse signal representations over topological spaces.
problem Sparse representation of signals over combinatorial topological spaces.
method Leveraging Hodge theory, the paper embeds topology into a dictionary structure via concatenated sub-dictionaries, each as a polynomial of Hodge Laplacians, and optimizes the dictionary coefficients and sparse signal representation via iterative alternating algorithms.
result Efficiently learned sparse representations and underlying relational structure of topological signals.
TDL uses topological features for deep learning models, promising new insights and solutions.
problem Lack of comprehensive theoretical foundations and practical benefits in TDL.
method Discussing open problems and potential solutions in TDL.
result TDL can complement existing graph and geometric learning methods.
Topology applied to real world data using persistent homology has started to find applications within machine learning, including deep learning. We present a differentiable topology layer that computes persistent homology based on level set filtrations and edge-based filtrations. We present three novel applications: th…
Machine learning classifies topological phases in leaky photonic lattices.
problem Classifying topological phases in leaky photonic lattices using limited data.
method A fully connected neural network trained on bulk intensity measurements.
result Accurate determination of topological properties from intensity distributions.
Pipeline learns topological features for protein stability prediction.
problem Predicting protein stability using topological features.
method Data-driven method to learn topological features, comparing with expert features.
result Topological features achieve 92%-99% of SME-based models' performance.
New method for manifold topological learning avoids remeshing issues.
problem Persistent homology on manifolds is numerically inconsistent.
method Persistent de Rham-Hodge Laplacians in Eulerian representation.
result Avoids numerical inconsistency over multiscale manifolds.
A new topology improves decentralized learning efficiency and accuracy.
problem Finding efficient decentralized learning topologies with fast consensus and low maximum degree.
method Proposed the Base-(k+1) Graph topology for decentralized learning. result The Base-(k+1) Graph enables faster convergence and better communication efficiency than the exponential graph. A common technique to improve learning performance in deep reinforcement learning (DRL) and many other machine learning algorithms is to run multiple learning agents in parallel. A neglected component in the development of these algorithms has been how best to arrange the learning agents involved to improve distributed…
PhyloVAE learns tree topologies without supervision.
problem Learning accurate tree representations from evolutionary data.
method Unsupervised learning via variational autoencoders with efficient tree generation.
result PhyloVAE generates high-resolution tree topologies efficiently.
New method integrates topological knowledge into data embeddings.
problem Lack of general tools to incorporate prior topological knowledge into embeddings.
method Introduces new topological losses to topologically regularize data embeddings.
result Natural representation of simple models like clusters and flares.
New architectures improve topological deep learning's ability to capture complex data features.
problem Current TDL architectures struggle with fundamental topological and metric invariants.
method Developed multi-cellular networks (MCN) and scalable MCN (SMCN) to enhance expressivity.
result SMCN outperforms HOMP and expressive graph methods in learning topological properties.
A novel method integrates feature and topology views for unsupervised graph representation learning.
problem Lack of mutual information across feature and topology views in graph representation learning.
method Proposes a multi-view representation learning module and a common representation learning module using mutual information maximization and reconstruction loss minimization.
result Demonstrates effectiveness in integrating feature and topology views, achieving comparable or better performance than supervised methods.
Proposes a new method for disentangling data representations using topological analysis.
problem Learning disentangled representations for better model explainability and robustness.
method Integrates a multi-scale topological loss term into the training of deep learning models.
result Improves disentanglement scores compared to state-of-the-art methods.
ICLR 2021 challenge in computational geometry and topology attracted 16 teams.
problem Designing and evaluating computational methods in differential geometry and topology.
method Designing and hosting an open-source competition with repositories Geomstats and Giotto-TDA.
result 16 teams participated in the challenge, showcasing innovative contributions to computational geometry and topology.
A new method learns node embeddings for signed directed networks by capturing both first-order and high-order topologies.
problem Learning representative node embeddings for signed directed networks considering both first-order and high-order topologies.
method Proposes a decoupled variational embedding (DVE) method that leverages a specially designed auto-encoder structure to capture both first-order and high-order topologies.
result Extensive experiments on real-world datasets show the effectiveness of DVE in link sign prediction and node recommendation tasks.
Persistent homology enhances graph classification by capturing long-range graph properties.
problem Lack of formal assessment of persistent homology in graph learning.
method Brief introduction and theoretical discussion of persistent homology in graph context, followed by empirical analysis.
result Persistent homology improves graph classification, especially for data with prominent topological structures.
Topological data analysis classifies encrypted bits with success.
problem Classifying encrypted data with traditional machine learning methods.
method Persistent homology for generating topological features, machine learning pipeline.
result Successfully classifies encrypted data, outperforming classical models.
EuLearn creates diverse 3D topological datasets for machine learning.
problem Training machine learning systems to discern topological features.
method Developed novel sampling and neural network architectures for graph and manifold data.
result Incorporating topological information improves deep learning performance on EuLearn datasets.
This paper proposes a new method for automatically selecting the optimal kernel bandwidth in density estimation.
problem The challenge of selecting the optimal kernel bandwidth in unsupervised density estimation.
method The approach uses a topology-based loss function for automated bandwidth selection.
result Demonstrates the potential of the topology-based approach across different dimensions.
A new model learns graph structures from data.
problem Learning graph topologies from data.
method Proposes a learning to optimise (L2O) approach to learn graph structures from node data.
result The proposed model learns graph structures more efficiently than classic iterative algorithms.
A new deep learning framework for topological data.
problem Developing models for data on complex topological domains.
method Introducing combinatorial complexes and developing attention-based CCNNs.
result CCNNs outperform existing models in tasks involving mesh shape analysis and graph learning.
ARTree uses deep learning to infer tree topologies efficiently.
problem Efficient phylogenetic inference from tree topologies.
method Deep autoregressive model based on graph neural networks (GNNs).
result ARTree provides a flexible family of distributions over tree topologies.
We analyze oversquashing in topological message-passing using relational structures.
problem Oversquashing in topological message-passing remains understudied.
method A unifying axiomatic framework that bridges graph and topological message-passing.
result Potential to advance topological deep learning.
Study shows topological features improve time series classification.
problem Classifying stochastic processes with varying noise and sampling.
method Topological data analysis features compared to statistical and raw features.
result Topological features lead to better classification performance.
Paper analyzes D-SGD convergence with heterogeneous data and proposes topology learning.
problem Efficiently dealing with data heterogeneity in decentralized learning.
method Revisits D-SGD analysis, introduces neighborhood heterogeneity, and proposes topology learning.
result Formulates topology learning as a tractable optimization problem and demonstrates its effectiveness.
GNNs may be limited by graph topology, affecting their learning outcomes.
problem Understanding how graph topology influences GNN behavior and performance.
method Investigating the interaction between local topological features and GNN message-passing schemes.
result Locally similar neighborhoods can lead to consistent node representations, affecting GNN performance.
Machine learning maps knots to embeddings, revealing topological invariants.
problem Learning topological invariance in knot theory.
method Contrastive and generative machine learning techniques, auto-regressive decoder Transformer network.
result Neural networks can map different knots to the same point in an embedding vector space.
Proposes TSBP for matching topological signal distributions.
problem Matching signal distributions on topological domains.
method Topological Schrödinger Bridge (TSBP) with linear topology-aware stochastic dynamics.
result Derives closed-form topological SB (TSB) for Gaussian boundary distributions.
Paper tackles dynamic graph topology identification in time-varying graphs.
problem Dynamic graph topology identification in time-varying graphs.
method Proposes an online algorithm for time-varying optimization, with intrinsic temporal regularization.
result Demonstrates performance on Gaussian graphical model problem.
Paper introduces topological eigenvalue theorems for tensor analysis in multi-modal data.
problem Lack of deep understanding of tensor structures in multi-modal data fusion.
method Introduces topological perspective to tensor eigenvalue analysis, linking eigenvalues to topological features.
result Establishes new theorems that enhance understanding of tensor structures in data fusion.
TopoFisher learns topological summaries by maximizing Fisher information, improving parameter efficiency and inference quality.
problem Simulation-based inference misses key information in low-order statistics, especially for non-Gaussian fields.
method TopoFisher uses a differentiable persistent-homology pipeline that learns topological summaries by maximizing local Gaussian Fisher information.
result TopoFisher recovers much of the available information and outperforms fixed topological vectorizations in weak gravitational lensing.
FCM clustering adapts to persistence diagrams for topological data analysis.
problem Integrating topological data into machine learning workflows.
method Adapting Fuzzy c-Means to persistence diagrams.
result FCM clustering captures topological structure without additional processing.
Survey on optimizing topological descriptors for machine learning.
problem Optimizing topological priors in machine learning models.
method Minimizing topologically-informed losses using gradient descent.
result Various techniques enable optimization of persistence-based loss functions.
Neural nets learn robust geometric data representations.
problem Ensuring neural networks are robust to adversarial attacks.
method Topological Data Analysis via persistence diagrams, Lipschitz stability.
result Certified ε-robustness on ORBIT5K dataset. The paper uses topological concepts to analyze neural networks, revealing complex structure and dynamics.
problem Understanding the structure and dynamics of deep learning models.
method Topological dynamical systems, index theory, and computational homology.
result Neurons correspond to simplexes in a simplicial complex, and topological invariants can be computed.
Graph neural network using Beltrami flow for feature and topology evolution.
problem Efficient feature learning and topology evolution on graphs.
method Discretized Beltrami flow applied to graph neural networks with positional encodings.
result Achieves state-of-the-art results on various benchmarks.
This paper refines understanding of decentralized learning by considering graph topology.
problem Current theory fails to predict performance in decentralized learning settings.
method Quantifies how graph topology influences convergence in decentralized learning.
result Graph topology significantly impacts convergence in decentralized learning, contrary to spectral gap theory.
This paper is first-line research expanding GANs into graph topology analysis. By leveraging the hierarchical connectivity structure of a graph, we have demonstrated that generative adversarial networks (GANs) can successfully capture topological features of any arbitrary graph, and rank edge sets by different stages a…
Topological Data Analysis (TDA) is a recent and growing branch of statistics devoted to the study of the shape of the data. In this work we investigate the predictive power of TDA in the context of supervised learning. Since topological summaries, most noticeably the Persistence Diagram, are typically defined in comple…
Paper tackles RL for power grid topology optimization.
problem Managing large action spaces in growing power networks.
method Hierarchical multi-agent reinforcement learning (MARL) framework.
result MARL framework outperforms single-agent RL methods.
Recently, in the paper "Weight Agnostic Neural Networks" Gaier & Ha utilized architecture search to find networks where the topology completely encodes the knowledge. However, architecture search in topology space is expensive. We use the existing framework of binarized networks to find performant topologies by constra…
Improved phylogenetic inference using VBPI-Mixtures for tree topology and branch length.
problem Multimodality of tree-topology posterior distributions in phylogenetic inference.
method VBPI-Mixtures algorithm that uses mixture learning within the BBVI framework.
result VBPI-Mixtures captures tree-topology distributions better than VBPI.
TopInG improves graph interpretability using persistent homology.
problem Lack of interpretability in Graph Neural Networks (GNNs).
method TopInG uses persistent homology to identify persistent rationale subgraphs in graphs.
result TopInG improves predictive accuracy and interpretability compared to state-of-the-art methods.