This review explores TDA and TDL beyond persistent homology.
problem Limitations of persistent homology in capturing topological invariants and homotopic evolution.
method Spectral representations, sheaf theory, Mayer topology, interaction topology, differential topology, geometric topology.
result Review of topological tools for various data types.
Computational topology has recently known an important development toward data analysis, giving birth to the field of topological data analysis. Topological persistence, or persistent homology, appears as a fundamental tool in this field. In this paper, we study topological persistence in general metric spaces, with a …
A new method compares persistent cycles in topological data.
problem Comparing persistent homology representations of two spaces.
method Direct comparison of individual persistent cycles based on persistence intervals and spatial placement.
result Demonstrated the effectiveness of the method in topological inference.
Approaches for approximating persistent homology for large datasets.
problem Inability to compute persistent homology for large datasets.
method Multiple subsampling framework for statistical approximation of persistent homology.
result Derivation of finite sample convergence rates for empirical means of persistent homology.
Persistent homology reveals a topological signature of grokking in neural networks.
problem Understanding how neural networks learn and generalize from modular arithmetic tasks.
method Persistent homology on point clouds derived from embedding matrices of models trained on modular arithmetic.
result A sharp increase in first homology persistence indicates grokking, with a dominant long-lived topological feature and structured secondary features.
Persistent homology enhances graph classification by capturing long-range graph properties.
problem Lack of formal assessment of persistent homology in graph learning.
method Brief introduction and theoretical discussion of persistent homology in graph context, followed by empirical analysis.
result Persistent homology improves graph classification, especially for data with prominent topological structures.
Despite the obvious similarities between the metrics used in topological data analysis and those of optimal transport, an optimal-transport based formalism to study persistence diagrams and similar topological descriptors has yet to come. In this article, by considering the space of persistence diagrams as a space of d…
Paper proves k-means clustering works on persistence diagrams.
problem Complex geometry of persistence diagram space.
method Proves convergence of k-means on persistence diagram space. result Performance of k-means on persistence diagrams and measures is superior. Topological data analysis and its main method, persistent homology, provide a toolkit for computing topological information of high-dimensional and noisy data sets. Kernels for one-parameter persistent homology have been established to connect persistent homology with machine learning techniques. We contribute a kernel…
A method for vectorizing persistence diagrams simplifies topological data analysis.
problem Challenges in integrating persistence diagrams into machine learning pipelines.
method Quantized Persistence and Integral transforms of Diagrams (Qupid) using binning and discrete transforms.
result Qupid preserves highly competitive performances compared to state-of-the-art methods across various classification tasks.
Study cosmic structures using Topological Data Analysis and Persistence Energy.
problem Investigate cosmic web evolution in ΛCDM cosmologies. method Apply LITE method to embed persistence diagrams into vector spaces and analyze cosmic structures.
result Discover a correlation between Persistence Energy and redshift values.
New lattice path method for statistical inference of persistent diagrams.
problem Statistical inference on persistent diagrams.
method Lattice path representation and combinatorial enumerations.
result Topological changes observed in spike proteins of COVID-19 virus.
Topology applied to real world data using persistent homology has started to find applications within machine learning, including deep learning. We present a differentiable topology layer that computes persistent homology based on level set filtrations and edge-based filtrations. We present three novel applications: th…
FCM clustering adapts to persistence diagrams for topological data analysis.
problem Integrating topological data into machine learning workflows.
method Adapting Fuzzy c-Means to persistence diagrams.
result FCM clustering captures topological structure without additional processing.
New method for manifold topological learning avoids remeshing issues.
problem Persistent homology on manifolds is numerically inconsistent.
method Persistent de Rham-Hodge Laplacians in Eulerian representation.
result Avoids numerical inconsistency over multiscale manifolds.
Bayesian method classifies actin cytoskeleton networks using topological data.
problem Classifying the structure of biological networks, especially actin cytoskeleton networks.
method Transform actin cytoskeleton networks into persistence diagrams, quantify variability with Bayesian framework, estimate posterior distributions.
result Bayesian framework successfully classifies actin filament networks, outperforming state-of-the-art methods.
Develops persistent Khovanov homology for tangles.
problem Lack of local topological features in evolutionary Khovanov homology for knots and links.
method Introduces a new mathematical framework using persistent Khovanov homology of tangles, employing functor and planar algebra.
result Provides a new method to characterize local features in curve-type data.
Topological data analysis quantifies structural dynamics using persistent homology.
problem Analyzing the shape and topology of structural dynamics data.
method Topological Data Analysis (TDA) with persistent homology to quantify shape over scales.
result Persistent homology reveals significant changes in manifold shape due to damage, not temperature.
New method for analyzing multiparameter persistence modules from smooth functions.
problem Analyzing multiparameter persistence modules from smooth functions.
method Generalized Morse theory applied to cobordism and Cerf theory.
result Complete description of persistence modules as direct sums of indecomposables.
Topology-GS improves 3D GS for better structural and feature integrity.
problem Compromised pixel-level and feature-level integrity in 3D GS.
method Incorporates Local Persistent Voronoi Interpolation (LPVI) and PersLoss based on persistent homology.
result Topology-GS outperforms existing methods in PSNR, SSIM, and LPIPS metrics.
TopInG improves graph interpretability using persistent homology.
problem Lack of interpretability in Graph Neural Networks (GNNs).
method TopInG uses persistent homology to identify persistent rationale subgraphs in graphs.
result TopInG improves predictive accuracy and interpretability compared to state-of-the-art methods.
STRAND: A single representation for hypothesis testing and vectorisation of persistence diagrams
problem Comparing persistence diagrams
method Survival topological representation analysis
result Non-parametric two-sample test with calibrated Type I error and high power
A faster, more stable method for optimizing topological functions.
problem Optimizing topological functions is computationally expensive and unstable.
method Introduces a novel backpropagation scheme for faster and more robust optimization.
result Produces more robust optima and stable visualizations.
Persistent entropy detects phase transitions in complex systems.
problem Detecting phase transitions in complex systems.
method Established a general theorem for persistent entropy to reliably detect phase transitions, introduced operational framework for finite-time computations.
result Persistent entropy exhibits an asymptotically non-vanishing gap across phases, robust numerical signatures across experiments.
Topological data analysis is an emerging mathematical concept for characterizing shapes in multi-scale data. In this field, persistence diagrams are widely used as a descriptor of the input data, and can distinguish robust and noisy topological properties. Nowadays, it is highly desired to develop a statistical framewo…
Introduces TSI, a variance-based measure for persistence barcodes.
problem Capturing structural variability in persistence barcodes.
method Variance-based scalar measure, TSI, and complementary TSigI.
result TSI captures structural variability complementary to entropy.
Persistence diagrams are two-dimensional plots that summarize the topological features of functions and are an important part of topological data analysis. A problem that has received much attention is how deal with sets of persistence diagrams. How do we summarize them, average them or cluster them? One approach -- th…
Persistence diagrams, the most common descriptors of Topological Data Analysis, encode topological properties of data and have already proved pivotal in many different applications of data science. However, since the (metric) space of persistence diagrams is not Hilbert, they end up being difficult inputs for most Mach…
Survey on optimizing topological descriptors for machine learning.
problem Optimizing topological priors in machine learning models.
method Minimizing topologically-informed losses using gradient descent.
result Various techniques enable optimization of persistence-based loss functions.
Develops robust persistence diagrams using kernel methods.
problem Persistence diagrams are sensitive to data perturbations.
method Constructs robust persistence diagrams from superlevel filtrations of robust density estimators using reproducing kernels.
result Robust persistence diagrams are consistent estimators in bottleneck distance.
In recent years there has been noticeable interest in the study of the "shape of data". Among the many ways a "shape" could be defined, topology is the most general one, as it describes an object in terms of its connectivity structure: connected components (topological features of dimension 0), cycles (features of dime…
Paper introduces a new topological loss for better convergence.
problem Optimizing topological losses for model's desired topological behavior.
method Introduces a new regularized topology-aware loss function.
result Guarantees efficient optimization of the new loss function.
New approach uses distributed persistence for stable, parallelizable topological analysis of large point clouds.
problem Estimating the full persistence diagram of large point clouds is expensive, unstable, and not a sufficient statistic.
method Proposes distributed persistence as a new invariant, which is perfectly parallelizable, more stable, and has a rich inverse theory.
result The map from point clouds to distributed persistence invariants is a global quasi-isometry, interpolating between purely geometric and topological invariants.
Paper introduces DP TDA for near-optimal private persistence diagrams.
problem Challenges in privatizing topological data analysis.
method Sensitivity analysis of persistence diagrams, use of exponential mechanism.
result Proposes near-optimal privacy mechanism for TDA.
Proposes deep graph persistence to address neural persistence issues in deep learning.
problem Variance of weights and lack of spatial structure in deep neural networks impact neural persistence.
method Extends neural persistence to the whole network, considering interactions between layers.
result Deep graph persistence alleviates variance-related issues and captures persistent paths through the network.
Paper speeds up topological signal identification and cycle matching.
problem Efficiently identifying and matching topological signals across datasets.
method Cohomological approach to persistent homology computation.
result Significantly faster performance on large-scale datasets.
Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of existing Bayesian optimization algorithms can only handle vector data and canno…
Topological method detects Hopf bifurcations from time series.
problem Detecting Hopf bifurcations in nonlinear systems from time series data.
method Persistent homology applied to Takens embedding for phase space reconstructions.
result A simple scalar topological functional identifies critical bifurcation points.
Paper uses TDA to assess cryptocurrency risk by measuring phase space instability.
problem Traditional risk measures fail to capture market dynamics' geometric structure.
method Applied Takens' Delay Embedding Theorem to generate point cloud, computed persistent homology groups, defined Topological Persistence Norm.
result Proposed leverage calibration heuristic based on persistence of 1-dimensional cycles.
Z-GCNETs uses topological data to improve time series forecasting.
problem Improving time series forecasting accuracy.
method Integrates topological data into graph convolutional networks (GCNs) using zigzag persistence.
result Z-GCNETs outperforms 13 state-of-the-art methods in traffic forecasting and Ethereum price prediction.
Topology-based information retrieval improves query accuracy.
problem Query accuracy in databases with complex structures.
method Dilation-invariant comparative measures of persistent homology.
result Topology-based retrieval outperforms standard methods.
New metric improves clustering in persistent homology.
problem Improving clustering accuracy in persistent homology.
method Defined a new non-archimedean cophenetic metric.
result Cophenetic metric enhances clustering quality and inter-relations.
Regularizes persistent homology gradients for neural network integration.
problem Ill-posed inverse problem in computing gradients of persistent homology.
method Regularization through a grouping term to define gradients for larger entities.
result Ensures gradients are defined with respect to larger entities, not individual points.
This paper presents a new clustering algorithm for space-time data based on the concepts of topological data analysis and in particular, persistent homology. Employing persistent homology - a flexible mathematical tool from algebraic topology used to extract topological information from data - in unsupervised learning …
Improved modeling of persistence diagrams for data analysis.
problem Determining significant outliers in persistence diagrams.
method Modification of the RST (Replicating Statistical Topology) model using MCMC Metropolis-Hastings algorithm.
result The modified RST model improves the goodness of fit in persistence diagram analysis.
New method enhances graph neural networks using contractions and hourglass persistence.
problem Limitations of traditional persistent homology in graph neural networks.
method Hourglass Persistence, Contraction Homology, contractions as a topological operation.
result Hourglass Persistence boosts expressivity, learnability, and stability in graph representation learning.
Generates random persistence diagrams for data analysis.
problem Generating random persistence diagrams for data analysis.
method Based on pairwise interacting point processes and RJ-MCMC algorithm.
result Demonstrates the efficacy and utility of RPDG in materials science.
Paper compares dimension reduction methods using topological analysis on EEG data.
problem Comparing dimension reduction methods on EEG data.
method Topological data analysis, including persistent homology, Wasserstein distance, and hypothesis tests.
result Different dimension reduction methods show significant qualitative differences across topological homologies.