arXiv research

In this paper, we study a new graph learning problem: learning to count subgraph isomorphisms. Different from other traditional graph learning problems such as node classification and link prediction, subgraph isomorphism counting is NP-complete and requires more global inference to oversee the whole graph. To make it …

Exploratory analysis over network data is often limited by the ability to efficiently calculate graph statistics, which can provide a model-free understanding of the macroscopic properties of a network. We introduce a framework for estimating the graphlet count---the number of occurrences of a small subgraph motif (e.g…

New bootstraps improve speed and accuracy for graph count functionals.

A new algorithm identifies interpretable network representations via subgraph count statistics.

The ability to detect and count certain substructures in graphs is important for solving many tasks on graph-structured data, especially in the contexts of computational chemistry and biology as well as social network analysis. Inspired by this, we propose to study the expressive power of graph neural networks (GNNs) v…

Applied researchers often construct a network from a random sample of nodes in order to infer properties of the parent network. Two of the most widely used sampling schemes are subgraph sampling, where we sample each vertex independently with probability $p$ and observe the subgraph induced by the sampled vertices, and…

In this work we propose R-GPM, a parallel computing framework for graph pattern mining (GPM) through a user-defined subgraph relation. More specifically, we enable the computation of statistics of patterns through their subgraph classes, generalizing traditional GPM methods. R-GPM provides efficient estimators for thes…

Learning properties of large graphs from samples has been an important problem in statistical network analysis since the early work of Goodman \cite{Goodman1949} and Frank \cite{Frank1978}. We revisit a problem formulated by Frank \cite{Frank1978} of estimating the number of connected components in a large graph based …

New exact tests detect changepoints in binary and count data, especially when normal approximations fail.

Networks are a fundamental tool for modeling complex systems in a variety of domains including social and communication networks as well as biology and neuroscience. Small subgraph patterns in networks, called network motifs, are crucial to understanding the structure and function of these systems. However, the role of…

Due to the limited resources and the scale of the graphs in modern datasets, we often get to observe a sampled subgraph of a larger original graph of interest, whether it is the worldwide web that has been crawled or social connections that have been surveyed. Inferring a global property of the original graph from such…

Graphlets are defined as k-node connected induced subgraph patterns. For an undirected graph, 3-node graphlets include close triangle and open triangle. When k = 4, there are six types of graphlets, e.g., tailed-triangle and clique are two possible 4-node graphlets. The number of each graphlet, called graphlet count, i…

The sizes of Markov equivalence classes of directed acyclic graphs play important roles in measuring the uncertainty and complexity in causal learning. A Markov equivalence class can be represented by an essential graph and its undirected subgraphs determine the size of the class. In this paper, we develop a method to …

Network-assisted regression uses conformal prediction for valid inference.

Graph Substructure Networks (GSN) improves GNN expressivity by counting subgraph isomorphisms.

GraphMoE generates random graphs using neural networks and graphlets.

When each data point is a large graph, graph statistics such as densities of certain subgraphs (motifs) can be used as feature vectors for machine learning. While intuitive, motif counts are expensive to compute and difficult to work with theoretically. Via graphon theory, we give an explicit quantitative bound for the…

Graphlets are induced subgraphs of a large network and are important for understanding and modeling complex networks. Despite their practical importance, graphlets have been severely limited to applications and domains with relatively small graphs. Most previous work has focused on exact algorithms, however, it is ofte…

Polynomial-time test for detecting dense subgraphs in heterogeneous networks.

The problem of finding itemsets that are statistically significantly enriched in a class of transactions is complicated by the need to correct for multiple hypothesis testing. Pruning untestable hypotheses was recently proposed as a strategy for this task of significant itemset mining. It was shown to lead to greater s…

This paper introduces a novel graph-analytic approach for detecting anomalies in network flow data called GraphPrints. Building on foundational network-mining techniques, our method represents time slices of traffic as a graph, then counts graphlets -- small induced subgraphs that describe local topology. By performing…

Efficiently matches subgraphs in noisy data without node labels.

Mining discriminative features for graph data has attracted much attention in recent years due to its important role in constructing graph classifiers, generating graph indices, etc. Most measurement of interestingness of discriminative subgraph features are defined on certain graphs, where the structure of graph objec…

Massively parallel architectures such as the GPU are becoming increasingly important due to the recent proliferation of data. In this paper, we propose a key class of hybrid parallel graphlet algorithms that leverages multiple CPUs and GPUs simultaneously for computing k-vertex induced subgraph statistics (called graph…

This note addresses some questions that arise in the series of works by Kyoji Saito on the growth functions of graphs. We study "hyperbolike" graphs, which include Cayley graphs of hyperbolic groups. We generalize some well-known results on hyperbolic groups to the hyperbolike setting, including rationality of generati…

Study geodesic paths on flat surfaces, comparing length and singularity counts.

Large graphs abound in machine learning, data mining, and several related areas. A useful step towards analyzing such graphs is that of obtaining certain summary statistics - e.g., or the expected length of a shortest path between two nodes, or the expected weight of a minimum spanning tree of the graph, etc. These sta…

odeN efficiently approximates multiple temporal motifs in large networks.

From social science to biology, numerous applications often rely on graphlets for intuitive and meaningful characterization of networks at both the global macro-level as well as the local micro-level. While graphlets have witnessed a tremendous success and impact in a variety of domains, there has yet to be a fast and …

This paper proposes a unified framework to quantify local and global inferential uncertainty for high dimensional nonparanormal graphical models. In particular, we consider the problems of testing the presence of a single edge and constructing a uniform confidence subgraph. Due to the presence of unknown marginal trans…

SubGNN tackles subgraph prediction challenges in graphs.

The paper proposes count echo state networks for forecasting graduate student enrollments.

The paper introduces subgraph nomination for finding similar subgraphs in networks.

Counting the number of clusters, when these clusters overlap significantly is a challenging problem in machine learning. We argue that a purely mathematical quantum theory, formulated using the path integral technique, when applied to non-physics modeling leads to non-physics quantum theories that are statistical in na…

NeuroMatch efficiently matches subgraphs in large graphs using neural networks.

Unified framework for subgraph-enhanced GNNs, improving prediction accuracy and reducing computation time.

Study area-minimizing subgraphs in integer lattices.

We propose graph kernels based on subgraph matchings, i.e. structure-preserving bijections between subgraphs. While recently proposed kernels based on common subgraphs (Wale et al., 2008; Shervashidze et al., 2009) in general can not be applied to attributed graphs, our approach allows to rate mappings of subgraphs by …

GNNS uses graph neural networks to efficiently estimate subgraph frequency distributions.

Proposes GIB for recognizing informative subgraphs in graphs.

We consider the densest $k$-subgraph problem, which seeks to identify the $k$-node subgraph of a given input graph with maximum number of edges. This problem is well-known to be NP-hard, by reduction to the maximum clique problem. We propose a new convex relaxation for the densest $k$-subgraph problem, based on a nucle…

RevTrack identifies suspicious subgraphs on blockchain for AML.

Faster algorithm for generalized mean densest subgraph problem.

Let $Γ$ be a finite graph and let $Γ^{\mathrm{e}}$ be its extension graph. We inductively define a sequence $\{Γ_i\}$ of finite induced subgraphs of $Γ^{\mathrm{e}}$ through successive applications of an operation called "doubling along a star". Then we show that every finite induced subgraph of $Γ^{\mathrm{e}}$ is iso…

Study validates saliency maps of GNNs using selective inference.

Classification and regression in which the inputs are graphs of arbitrary size and shape have been paid attention in various fields such as computational chemistry and bioinformatics. Subgraph indicators are often used as the most fundamental features, but the number of possible subgraph patterns are intractably large …

Efficient algorithm for graph matching in correlated stochastic block models.

We consider two closely related problems: planted clustering and submatrix localization. The planted clustering problem assumes that a random graph is generated based on some underlying clusters of the nodes; the task is to recover these clusters given the graph. The submatrix localization problem concerns locating hid…