A locally-built, LLM-digested index of recent arXiv papers in quant finance, geometry/topology, and statistical ML — keyword search served straight from SQLite on this machine.
Characterizes sequences from two-component link diagrams.
Sequence models assign probabilities to variable-length sequences such as natural language texts. The ability of sequence models to capture temporal dependence can be characterized by the temporal scaling of correlation and mutual information. In this paper, we study the mutual information of recurrent neural networks …
Inferring the structural properties of a protein from its amino acid sequence is a challenging yet important problem in biology. Structures are not known for the vast majority of protein sequences, but structure is critical for understanding function. Existing approaches for detecting structural similarity between prot…
Motivation: Prediction of the interaction affinity between proteins and compounds is a major challenge in the drug discovery process. WideDTA is a deep-learning based prediction model that employs chemical and biological textual sequence information to predict binding affinity. Results: WideDTA uses four text-based inf…
New method improves Robbins-Monro algorithm convergence with prior information.
ATS2S model predicts RUL of industrial equipment using attention mechanism.
SAttention improves long sequence attention with smoothed skeleton sketching.
A new model captures variability in time series data.
This work compresses sequences by treating them as continuous-time processes, enabling efficient discretization.
The Fisher information metric is an important foundation of information geometry, wherein it allows us to approximate the local geometry of a probability distribution. Recurrent neural networks such as the Sequence-to-Sequence (Seq2Seq) networks that have lately been used to yield state-of-the-art performance on speech…
Sequence models quantify uncertainty over latent concepts.
Magnetic resonance imaging (MRI) is being increasingly utilized to assess, diagnose, and plan treatment for a variety of diseases. The ability to visualize tissue in varied contrasts in the form of MR pulse sequences in a single scan provides valuable insights to physicians, as well as enabling automated systems perfor…
Locally-contextual CRFs improve sequence labeling performance.
Recurrent Neural Networks (RNNs) have been proven to be effective in modeling sequential data and they have been applied to boost a variety of tasks such as document classification, speech recognition and machine translation. Most of existing RNN models have been designed for sequences assumed to be identically and ind…
In this work, we develop a novel regularizer to improve the learning of long-range dependency of sequence data. Applied on language modelling, our regularizer expresses the inductive bias that sequence variables should have high mutual information even though the model might not see abundant observations for complex lo…
AverageTime uses simple averaging to enhance long-term time series forecasting.
This paper proposes a new meta-learning method -- named HARMLESS (HAwkes Relational Meta LEarning method for Short Sequences) for learning heterogeneous point process models from short event sequence data along with a relational network. Specifically, we propose a hierarchical Bayesian mixture Hawkes process model, whi…
CHAMELEON uses RNNs to recommend news sequences better than other methods.
Deep conditional generative models are developed to simultaneously learn the temporal dependencies of multiple sequences. The model is designed by introducing a three-way weight tensor to capture the multiplicative interactions between side information and sequences. The proposed model builds on the Temporal Sigmoid Be…
Paper proposes a new pipeline for few-shot classification using forget-update module and channel vector sequence.
Paper optimizes change-point detection using learned distributions from training sequences.
In this paper, we propose a deep learning approach to tackle the automatic summarization tasks by incorporating topic information into the convolutional sequence-to-sequence (ConvS2S) model and using self-critical sequence training (SCST) for optimization. Through jointly attending to topics and word-level alignment, o…
Using sequence to sequence algorithms for query expansion has not been explored yet in Information Retrieval literature nor in Question-Answering's. We tried to fill this gap in the literature with a custom Query Expansion engine trained and tested on open datasets. Starting from open datasets, we built a Query Expansi…
Neural network framework for language recognition considers sequence information and improves accuracy.
Paper tackles adaptive deletion of data points from trained models.
A convolutional sequence to sequence non-intrusive load monitoring model is proposed in this paper. Gated linear unit convolutional layers are used to extract information from the sequences of aggregate electricity consumption. Residual blocks are also introduced to refine the output of the neural network. The partiall…
The goal of temporal alignment is to establish time correspondence between two sequences, which has many applications in a variety of areas such as speech processing, bioinformatics, computer vision, and computer graphics. In this paper, we propose a novel temporal alignment method called least-squares dynamic time war…
A fundamental aspect of biological information processing is the ubiquity of sequence-function relationships -- functions that map the sequence of DNA, RNA, or protein to a biochemically relevant activity. Most sequence-function relationships in biology are quantitative, but only recently have experimental techniques f…
AbDiffuser generates full-atom antibodies with sequence and structure fidelity.
Recent dialogue approaches operate by reading each word in a conversation history, and aggregating accrued dialogue information into a single state. This fixed-size vector is not expandable and must maintain a consistent format over time. Other recent approaches exploit an attention mechanism to extract useful informat…
This paper presents a new optimisation approach to train Deep Neural Networks (DNNs) with discriminative sequence criteria. At each iteration, the method combines information from the Natural Gradient (NG) direction with local curvature information of the error surface that enables better paths on the parameter manifol…
Multimodal machine learning is a core research area spanning the language, visual and acoustic modalities. The central challenge in multimodal learning involves learning representations that can process and relate information from multiple modalities. In this paper, we propose two methods for unsupervised learning of j…
Phylogenetic tree reconstruction is traditionally based on multiple sequence alignments (MSAs) and heavily depends on the validity of this information bottleneck. With increasing sequence divergence, the quality of MSAs decays quickly. Alignment-free methods, on the other hand, are based on abstract string comparisons …
Various and ubiquitous information systems are being used in monitoring, exchanging, and collecting information. These systems are generating massive amount of event sequence logs that may help us understand underlying phenomenon. By analyzing these logs, we can learn process models that describe system procedures, pre…
Hybrid methods that utilize both content and rating information are commonly used in many recommender systems. However, most of them use either handcrafted features or the bag-of-words representation as a surrogate for the content information but they are neither effective nor natural enough. To address this problem, w…
Bayesian optimization of antibodies learns from immune system evolution.
Text normalization is an important enabling technology for several NLP tasks. Recently, neural-network-based approaches have outperformed well-established models in this task. However, in languages other than English, there has been little exploration in this direction. Both the scarcity of annotated data and the compl…
A method to generate long-range human actions by leveraging graph convolutional networks and self-attention.
With ongoing developments and innovations in single-cell RNA sequencing methods, advancements in sequencing performance could empower significant discoveries as well as new emerging possibilities to address biological and medical investigations. In the study, we will be using the dataset collected by the authors of Sys…
Bayes-assisted confidence sequences improve efficiency for bounded means.
Proposes CLSM for better subsequence generation in music sequences.
Sequence set is a widely-used type of data source in a large variety of fields. A typical example is protein structure prediction, which takes an multiple sequence alignment (MSA) as input and aims to infer structural information from it. Almost all of the existing approaches exploit MSAs in an indirect fashion, i.e., …
Computer simulations have become a popular tool of assessing complex skills such as problem-solving skills. Log files of computer-based items record the entire human-computer interactive processes for each respondent. The response processes are very diverse, noisy, and of nonstandard formats. Few generic methods have b…
Deep learning networks have shown state-of-the-art performance in many image reconstruction problems. However, it is not well understood what properties of representation and learning may improve the generalization ability of the network. In this paper, we propose that the generalization ability of an encoder-decoder n…
Recurrent neural networks (RNNs) have been drawing much attention with great success in many applications like speech recognition and neural machine translation. Long short-term memory (LSTM) is one of the most popular RNN units in deep learning applications. LSTM transforms the input and the previous hidden states to …
Data privacy is an important issue for "machine learning as a service" providers. We focus on the problem of membership inference attacks: given a data sample and black-box access to a model's API, determine whether the sample existed in the model's training data. Our contribution is an investigation of this problem in…
Several machine learning problems arising in natural language processing can be modeled as a sequence labeling problem. We provide Gaussian process models based on pseudo-likelihood approximation to perform sequence labeling. Gaussian processes (GPs) provide a Bayesian approach to learning in a kernel based framework. …
Novel graph neural network combines random walks with local message passing.