dynoNet learns dynamical systems using linear operators.
arXiv research
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The paper offers error bounds for quantized dynamical models.
Computational identification of promoters is notoriously difficult as human genes often have unique promoter sequences that provide regulation of transcription and interaction with transcription initiation complex. While there are many attempts to develop computational promoter identification methods, we have no reliab…
Established recurrent neural networks are well-suited to solve a wide variety of prediction tasks involving discrete sequences. However, they do not perform as well in the task of dynamical system identification, when dealing with observations from continuous variables that are unevenly sampled in time, for example due…
Recent developments within deep learning are relevant for nonlinear system identification problems. In this paper, we establish connections between the deep learning and the system identification communities. It has recently been shown that convolutional architectures are at least as capable as recurrent architectures …
Long non-coding RNAs (lncRNAs) are a class of non-coding RNAs which play a significant role in several biological processes. RNA-seq based transcriptome sequencing has been extensively used for identification of lncRNAs. However, accurate identification of lncRNAs in RNA-seq datasets is crucial for exploring their char…
Paper tackles counterfactual sentence detection and evaluation.
Person Re-Identification (person re-id) is a crucial task as its applications in visual surveillance and human-computer interaction. In this work, we present a novel joint Spatial and Temporal Attention Pooling Network (ASTPN) for video-based person re-identification, which enables the feature extractor to be aware of …
We study a variant of the source identification game with training data in which part of the training data is corrupted by an attacker. In the addressed scenario, the defender aims at deciding whether a test sequence has been drawn according to a discrete memoryless source , whose statistics are known to hi…
A distributed system identification method for LTI systems using reverse experience replay.
BestChanID identifies the channel with maximal capacity using training sequences.
We propose a method for face de-identification that enables fully automatic video modification at high frame rates. The goal is to maximally decorrelate the identity, while having the perception (pose, illumination and expression) fixed. We achieve this by a novel feed-forward encoder-decoder network architecture that …
Paper unifies subspace identification and DMD for dynamical systems.
This study improves UAV identification using RF signals with one-shot generative methods.
Algorithm identifies best arm with biased proxy and selective ground truth audits.
Promoter is a short region of DNA which is responsible for initiating transcription of specific genes. Development of computational tools for automatic identification of promoters is in high demand. According to the difference of functions, promoters can be of different types. Promoters may have both intra and inter cl…
A novel deep probabilistic model for dynamic systems forecasting.
T. Saito and M. Teragaito asked whether Berge knots of type VII are hyperbolic, and showed that some infinite sequences of the knots are hyperbolic. We show that Berge knots of types VII and VIII are hyperbolic except the known sequence of torus knots. We used the Reidemeister torsions. As a result, the Alexander polyn…
Challenge hides and seeks privacy in clinical time-series data.
Sequential data often originates from diverse domains across which statistical regularities and domain specifics exist. To specifically learn cross-domain sequence representations, we introduce disentangled state space models (DSSM) -- a class of SSM in which domain-invariant state dynamics is explicitly disentangled f…
New dataset and models detect cryptocurrency bubbles using social media data.
In its most general form, the recognition problem in Riemannian geometry asks for the identification of an unknown Riemannian manifold via measurements of metric invariants on the manifold. We introduce a new infinite sequence of invariants, the first term of which is the usual diameter, and illustrate the role of thes…
Continuous-time event sequences represent discrete events occurring in continuous time. Such sequences arise frequently in real-life. Usually we expect the sequences to follow some regular pattern over time. However, sometimes these patterns may be interrupted by unexpected absence or occurrences of events. Identificat…
In this paper, we consider a best action identification problem in the stochastic linear bandit setup with a fixed confident constraint. In the considered best action identification problem, instead of minimizing the accumulative regret as done in existing works, the learner aims to obtain an accurate estimate of the u…
The paper develops a convex parameterization for robust RNNs ensuring stability and robustness.
Study on generating and identifying languages privately, showing privacy imposes costs and creates barriers.
This paper solves the best arm identification problem with both quick commitment and reward maximization.
RNA-binding proteins (RBPs) play crucial roles in many biological processes, e.g. gene regulation. Computational identification of RBP binding sites on RNAs are urgently needed. In particular, RBPs bind to RNAs by recognizing sequence motifs. Thus, fast locating those motifs on RNA sequences is crucial and time-efficie…
We address the structure identification and the uniform approximation of sums of ridge functions on , representing a general form of a shallow feed-forward neural network, from a small number of query samples. Higher order differentiation, as used in our constructive a…
The genomic profile underlying an individual tumor can be highly informative in the creation of a personalized cancer treatment strategy for a given patient; a practice known as precision oncology. This involves next generation sequencing of a tumor sample and the subsequent identification of genomic aberrations, such …
Algorithm identifies missing data distributions in graphical models.
Algorithm identifies bilinear dynamical systems from noisy data.
Motivation: Proteins are known to undergo conformational changes in the course of their functions. The changes in conformation are often attributable to a small fraction of residues within the protein. Therefore identification of these variable regions is important for an understanding of protein function. Results: We …
Bayes-assisted confidence sequences improve efficiency for bounded means.
BCI system improves word selection efficiency using sequential best-arm identification.
Local ancestry inference (LAI) allows identification of the ancestry of all chromosomal segments in admixed individuals, and it is a critical step in the analysis of human genomes with applications from pharmacogenomics and precision medicine to genome-wide association studies. In recent years, many LAI techniques have…
In this paper we consider the problem of video-based person re-identification, which is the task of associating videos of the same person captured by different and non-overlapping cameras. We propose a Siamese framework in which video frames of the person to re-identify and of the candidate one are processed by two ide…
A novel algorithm for best-arm identification in non-stationary linear bandits reduces error probability.
New algorithm tackles nonstationary linear bandits with latent dynamics.
The worldwide surge of multiresistant microbial strains has propelled the search for alternative treatment options. The study of Protein-Protein Interactions (PPIs) has been a cornerstone in the clarification of complex physiological and pathogenic processes, thus being a priority for the identification of vital compon…
We develop a model to predict effects of sequential interventions, clarifying their combined impact.
We prove that stochastic gradient descent efficiently converges to the global optimizer of the maximum likelihood objective of an unknown linear time-invariant dynamical system from a sequence of noisy observations generated by the system. Even though the objective function is non-convex, we provide polynomial running …
The identification of anomalies in temporal data is a core component of numerous research areas such as intrusion detection, fault prevention, genomics and fraud detection. This article provides an experimental comparison of the novelty detection problem applied to discrete sequences. The objective of this study is to …
Improved neural models for diverse user event sequences.
Identification of high affinity drug-target interactions is a major research question in drug discovery. Proteins are generally represented by their structures or sequences. However, structures are available only for a small subset of biomolecules and sequence similarity is not always correlated with functional similar…
This paper provides both a detailed study of color-dependence of link homologies, as realized in physics as certain spaces of BPS states, and a broad study of the behavior of BPS states in general. We consider how the spectrum of BPS states varies as continuous parameters of a theory are perturbed. This question can be…
The paper provides robustness guarantees for mode estimation in bandits.
In this paper, we propose a provably correct algorithm for convolutive nonnegative matrix factorization (CNMF) under separability assumptions. CNMF is a convolutive variant of nonnegative matrix factorization (NMF), which functions as an NMF with additional sequential structure. This model is useful in a number of appl…