arXiv research

Characterization of a patient clinical phenotype is central to biomedical informatics. ICD codes, assigned to inpatient encounters by coders, is important for population health and cohort discovery when clinical information is limited. While ICD codes are assigned to patients by professionals trained and certified in c…

A new predictive coding algorithm improves machine learning performance.

Study investigates predictive coding models for phonemic learning.

In this paper we study output coding for multi-label prediction. For a multi-label output coding to be discriminative, it is important that codewords for different label vectors are significantly different from each other. In the meantime, unlike in traditional coding theory, codewords in output coding are to be predic…

New model reveals balance crucial for robust neural coding.

PCGs encompass a broader range of neural networks.

PredNet, a deep predictive coding network developed by Lotter et al., combines a biologically inspired architecture based on the propagation of prediction error with self-supervised representation learning in video. While the architecture has drawn a lot of attention and various extensions of the model exist, there is …

Predicting the runtime complexity of a programming code is an arduous task. In fact, even for humans, it requires a subtle analysis and comprehensive knowledge of algorithms to predict time complexity with high fidelity, given any code. As per Turing's Halting problem proof, estimating code complexity is mathematically…

The paper relaxes constraints on predictive coding models, making them more biologically plausible.

Bayesian Predictive Coding improves deep learning uncertainty quantification.

We present a neural model for representing snippets of code as continuous distributed vectors ("code embeddings"). The main idea is to represent a code snippet as a single fixed-length $\textit{code vector}$, which can be used to predict semantic properties of the snippet. This is performed by decomposing code to a col…

The recent use of `Big Code' with state-of-the-art deep learning methods offers promising avenues to ease program source code writing and correction. As a first step towards automatic code repair, we implemented a graph neural network model that predicts token types for Javascript programs. The predictions achieve an a…

A new model for sequential memory using temporal predictive coding.

Deep predictive coding networks are neuroscience-inspired unsupervised learning models that learn to predict future sensory states. We build upon the PredNet implementation by Lotter, Kreiman, and Cox (2016) to investigate if predictive coding representations are useful to predict brain activity in the visual cortex. W…

Paper proposes a novel approach to improve spatiotemporal precipitation forecasts.

The goal of predictive sparse coding is to learn a representation of examples as sparse linear combinations of elements from a dictionary, such that a learned hypothesis linear in the new representation performs well on a predictive task. Predictive sparse coding algorithms recently have demonstrated impressive perform…

Predictive coding networks use inference learning for efficient AI modeling.

A new approach predicts next observations without explicit decoding for better control.

Clinical notes are text documents that are created by clinicians for each patient encounter. They are typically accompanied by medical codes, which describe the diagnosis and treatment. Annotating these codes is labor intensive and error prone; furthermore, the connection between the codes and the text is not annotated…

Improves code2vec for Java classes by obfuscating variable names.

AI agent predicts industry and product/service codes for companies.

Predictive Sparse Manifold Transform learns dynamic video sequences.

We propose a novel neural sequence prediction method based on \textit{error-correcting output codes} that avoids exact softmax normalization and allows for a tradeoff between speed and performance. Instead of minimizing measures between the predicted probability distribution and true distribution, we use error-correcti…

Enhances medical code predictions for multi-morbidity patients using text classification.

Most of the JavaScript code deployed in the wild has been minified, a process in which identifier names are replaced with short, arbitrary and meaningless names. Minified code occupies less space, but also makes the code extremely difficult to manually inspect and understand. This paper presents Context2Name, a deep le…

Accurate estimation of the run time of computational codes has a number of significant advantages for scientific computing. It is required information for optimal resource allocation, improving turnaround times and utilization of science gateways. Furthermore, it allows users to better plan and schedule their research,…

Backdoors can be implanted in neural models of source code, and we detect and remove them.

While recent progress in deep reinforcement learning has enabled robots to learn complex behaviors, tasks with long horizons and sparse rewards remain an ongoing challenge. In this work, we propose an effective reward shaping method through predictive coding to tackle sparse reward problems. By learning predictive repr…

This study presents a multimodal machine learning model to predict ICD-10 diagnostic codes. We developed separate machine learning models that can handle data from different modalities, including unstructured text, semi-structured text and structured tabular data. We further employed an ensemble method to integrate all…

We propose using canonical correlation analysis (CCA) to generate features from sequences of medical billing codes. Applying this novel use of CCA to a database of medical billing codes for patients with diverticulitis, we first demonstrate that the CCA embeddings capture meaningful relationships among the codes. We th…

In this paper, we present an effective deep prediction framework based on robust recurrent neural networks (RNNs) to predict the likely therapeutic classes of medications a patient is taking, given a sequence of diagnostic billing codes in their record. Accurately capturing the list of medications currently taken by a …

Professional software developers spend a significant amount of time fixing builds, but this has received little attention as a problem in automatic program repair. We present a new deep learning architecture, called Graph2Diff, for automatically localizing and fixing build errors. We represent source code, build config…

Sparse coding approximates the data sample as a sparse linear combination of some basic codewords and uses the sparse codes as new presentations. In this paper, we investigate learning discriminative sparse codes by sparse coding in a semi-supervised manner, where only a few training samples are labeled. By using the m…

Spatiotemporal sequence prediction is an important problem in deep learning. We study next-frame(s) video prediction using a deep-learning-based predictive coding framework that uses convolutional, long short-term memory (convLSTM) modules. We introduce a novel reduced-gate convolutional LSTM(rgcLSTM) architecture that…

The widespread digitization of patient data via electronic health records (EHRs) has created an unprecedented opportunity to use machine learning algorithms to better predict disease risk at the patient level. Although predictive models have previously been constructed for a few important diseases, such as breast cance…

Code search and comprehension have become more difficult in recent years due to the rapid expansion of available source code. Current tools lack a way to label arbitrary code at scale while maintaining up-to-date representations of new programming languages, libraries, and functionalities. Comprehensive labeling of sou…

Deep neural networks are vulnerable to adversarial examples - small input perturbations that result in incorrect predictions. We study this problem for models of source code, where we want the network to be robust to source-code modifications that preserve code functionality. (1) We define a powerful adversary that can…

AutoStan improves Bayesian models via predictive feedback.

In order to submit a claim to insurance companies, a doctor needs to code a patient encounter with both the diagnosis (ICDs) and procedures performed (CPTs) in an Electronic Health Record (EHR). Identifying and applying relevant procedures code is a cumbersome and time-consuming task as a doctor has to choose from arou…

New theory shows predictive coding makes learning landscape easier to navigate.

Although software analytics has experienced rapid growth as a research area, it has not yet reached its full potential for wide industrial adoption. Most of the existing work in software analytics still relies heavily on costly manual feature engineering processes, and they mainly address the traditional classification…

In many video coding systems, separable transforms (such as two-dimensional DCT-2) have been used to code block residual signals obtained after prediction. This paper proposes a parametric approach to build graph-based separable transforms (GBSTs) for video coding. Specifically, a GBST is derived from a pair of line gr…

Online DEM improves tracking of latent states in dynamic systems.

Predictive coding networks are shown to be stable, robust, and converge faster than backpropagation.

In this paper, we propose a semi-supervised dictionary learning method that uses both the information in labelled and unlabelled data and jointly trains a linear classifier embedded on the sparse codes. The manifold structure of the data in the sparse code space is preserved using the same approach as the Locally Linea…

Long non-coding RNAs (lncRNAs) are a class of non-coding RNAs which play a significant role in several biological processes. RNA-seq based transcriptome sequencing has been extensively used for identification of lncRNAs. However, accurate identification of lncRNAs in RNA-seq datasets is crucial for exploring their char…

Machine learning improves RNA secondary structure prediction.

Stack Overflow is the most popular Q&A website among software developers. As a platform for knowledge sharing and acquisition, the questions posted in Stack Overflow usually contain a code snippet. Stack Overflow relies on users to properly tag the programming language of a question and it simply assumes that the progr…