Cheap permutation tests speed up distribution testing without sacrificing accuracy.
problem Efficiently testing distribution differences and independence.
method Group datapoints into bins and permute only these bins, using stored sufficient statistics.
result Cheap permutation tests maintain the accuracy and optimality of standard tests but are significantly faster.
A new permutation method improves two-sample testing power.
problem Two-sample testing with improved power and validity.
method Structured block-restricted cross-swaps.
result Block-restricted permutations achieve higher power than full permutations.
A new method reduces computational costs for testing RF variable importance measures.
problem Testing variable importance measures from random forests is computationally expensive and challenging.
method Sequential permutation testing and sequential p-value estimation to reduce computational costs.
result Theoretical properties of sequential tests are confirmed, maintaining type-I error and high power.
New tests detect high-order interactions without permutations.
problem Scalability issues in kernel-based tests for high-order interactions.
method Permutation-free high-order tests using V-statistics and cross-centring.
result Tests yield standard normal distribution under null hypothesis.
TRIP detects unreliable feature importance scores in random forests.
problem Unreliable feature importance scores in random forests due to model extrapolation.
method Develops TRIP (Test for Reliable Interpretation via Permutation) to detect unreliable permutation feature importance scores.
result TRIP reliably detects unreliable permutation feature importance scores in high-dimensional settings.
New method for accurate permutation inference in CCA.
problem Inaccurate permutation inference in CCA.
method Proposed solutions for permutation inference in CCA, including transforming residuals and stepwise estimation.
result Valid permutation tests for CCA with and without nuisance variables.
This paper introduces differentially private permutation tests for hypothesis testing.
problem Privacy concerns in sensitive data analysis.
method Differentially private permutation tests for kernel methods.
result Proposes dpMMD and dpHSIC for two-sample and independence testing, achieving optimal power.
A permutation-based SW test achieves minimax-optimal power for two-sample testing.
problem Nonparametric two-sample testing using the sliced Wasserstein distance.
method Proposes a permutation-based SW test and analyzes its performance.
result Achieves minimax separation rate n−1/2 over multinomial and bounded-support alternatives. A new kernel test avoids permutations for independence testing.
problem Intractable null distributions of kernel statistics.
method Developed xHSIC and xdCov, avoiding permutations.
result New tests have limiting Gaussian distributions under null.
Enhances GNNs by capturing node relationships, outperforming 2-WL test.
problem Inability of conventional GNNs to fully capture node relationships due to permutation invariance.
method Develops permutation-sensitive aggregation mechanism using permutation groups.
result Proves superior expressivity compared to 2-WL test and not less than 3-WL test.
Study examines persistence diagrams in machine learning, proposing permutation tests.
problem Understanding the power and limitations of persistence diagrams in machine learning.
method Carried out experiments on graph and shape data, proposed permutation tests for persistence diagrams.
result Persistence pairing shows significant improvement in various tasks, but the most critical values are most discriminative.
Study shows optimal rates for independence testing via U-statistic permutation tests.
problem Developing a valid test of independence for pairs with additional smoothness constraints.
method Defining a measure of dependence, using a permutation test based on a basis expansion and U-statistic estimator.
result Proves minimax optimality of the test in separation rates for certain cases.
Permutation testing is a non-parametric method for obtaining the max null distribution used to compute corrected p-values that provide strong control of false positives. In neuroimaging, however, the computational burden of running such an algorithm can be significant. We find that by viewing the permutation testing …
Paper proposes a differentially private test for joint dependence among random vectors.
problem Detecting joint dependence among sensitive data while maintaining privacy.
method Differentially private permutation methodology for dHSIC test.
result Proposed test attains minimax optimal power across privacy regimes.
Paper proposes a chi-square test for distance correlation.
problem Testing distance correlation is computationally expensive.
method Proposes a chi-square test for distance correlation, non-parametric, fast, applicable to various metrics.
result Chi-square test exhibits similar power to permutation test and can be valid and universally consistent for testing independence.
We tackle permutation in linear regression with a new inference framework.
problem Statistical investigation of permutation in linear regression models.
method Localization step followed by conditional Monte Carlo test and coefficient inference.
result Valid statistical inference procedures for permutation and regression coefficients.
A new method improves feature importance and model stress-testing reliability.
problem Estimating feature contributions in machine learning models for trust and transparency.
method Replacing multiple random permutations with a single, deterministic, and optimal permutation.
result Improved bias-variance tradeoffs and accuracy in challenging scenarios.
A new method uses vectorized summaries of persistence diagrams for efficient hypothesis testing.
problem Efficient hypothesis testing for large and complex persistence diagrams.
method Vectorized summaries of Betti functions and a new shuffling technique.
result The vectorized Betti function leads to competitive results compared to baseline methods.
Error bounds based on worst likely assignments use permutation tests to validate classifiers. Worst likely assignments can produce effective bounds even for data sets with 100 or fewer training examples. This paper introduces a statistic for use in the permutation tests of worst likely assignments that improves error b…
Recently, the method of b-bit minwise hashing has been applied to large-scale linear learning and sublinear time near-neighbor search. The major drawback of minwise hashing is the expensive preprocessing cost, as the method requires applying (e.g.,) k=200 to 500 permutations on the data. The testing time can also be ex…
Conditional independence testing is a fundamental problem underlying causal discovery and a particularly challenging task in the presence of nonlinear and high-dimensional dependencies. Here a fully non-parametric test for continuous data based on conditional mutual information combined with a local permutation scheme …
Multiple hypothesis testing is a significant problem in nearly all neuroimaging studies. In order to correct for this phenomena, we require a reliable estimate of the Family-Wise Error Rate (FWER). The well known Bonferroni correction method, while simple to implement, is quite conservative, and can substantially under…
A new test statistic speeds up MMD while maintaining power.
problem Efficiently testing two distributions without permutations.
method Cross-MMD statistic based on sample-splitting and studentization.
result Cross-MMD has a limiting standard Gaussian distribution under the null.
Proposes PEMI for online selective conformal prediction with asymmetric rules.
problem Challenges of handling asymmetric selection mechanisms in online selective conformal prediction.
method PEMI: permutation-based framework for selective conformal prediction with arbitrary asymmetric selection rules.
result Achieves exact selection-conditional coverage for any asymmetric selection mechanism and any prediction model.
A new test validates ensemble models against the null hypothesis.
problem Validating ensemble models against the null hypothesis of a constant response.
method Randomized permutation test on SVEM model predictions.
result The test maintains Type I error rate even with more parameters than observations.
Conditional independence testing is a key problem required by many machine learning and statistics tools. In particular, it is one way of evaluating the usefulness of some features on a supervised prediction problem. We propose a novel conditional independence test in a predictive setting, and show that it achieves bet…
We present a novel algorithm, Westfall-Young light, for detecting patterns, such as itemsets and subgraphs, which are statistically significantly enriched in one of two classes. Our method corrects rigorously for multiple hypothesis testing and correlations between patterns through the Westfall-Young permutation proced…
In literature there are several studies on the performance of Bayesian network structure learning algorithms. The focus of these studies is almost always the heuristics the learning algorithms are based on, i.e. the maximisation algorithms (in score-based algorithms) or the techniques for learning the dependencies of e…
New statistics improve kernel independence testing efficiency.
problem Improving efficiency in kernel independence testing.
method Adapting martingale MMD construction to joint independence problem.
result Two new statistics achieve finite-sample consistency with linear per-test cost.
We describe a simple, efficient, permutation based procedure for selecting the penalty parameter in the LASSO. The procedure, which is intended for applications where variable selection is the primary focus, can be applied in a variety of structural settings, including generalized linear models. We briefly discuss conn…
A new nonparametric test measures dependence between variables using decision trees.
problem Measuring statistical dependence between two variables robustly and efficiently.
method An ensemble of decision trees discriminates between observed and permuted samples without generating the latter.
result The method effectively detects complex relationships from noisy data.
HOoD detects near-out-of-distribution groups in correlated biomedical assays.
problem Detecting near-out-of-distribution cases in biased or incomplete data.
method Projects correlated measurements through a trained model and uses permutation-based hypothesis tests.
result HOoD reliably identifies OoD groups, outperforming other detectors.
Sample efficiency and scalability to a large number of agents are two important goals for multi-agent reinforcement learning systems. Recent works got us closer to those goals, addressing non-stationarity of the environment from a single agent's perspective by utilizing a deep net critic which depends on all observatio…
Improves A/B testing power using a two-armed bandit framework.
problem Comparing outcomes under a new policy to a control.
method Doubly robust estimation, two-armed bandit framework, permutation-based method.
result Superior performance in A/B testing compared to existing methods.
We propose a nonparametric test of independence, termed optHSIC, between a covariate and a right-censored lifetime. Because the presence of censoring creates a challenge in applying the standard permutation-based testing approaches, we use optimal transport to transform the censored dataset into an uncensored one, whil…
Deep neural networks have demonstrated cutting edge performance on various tasks including classification. However, it is well known that adversarially designed imperceptible perturbation of the input can mislead advanced classifiers. In this paper, Permutation Phase Defense (PPD), is proposed as a novel method to resi…
Least-squares models such as linear regression and Linear Discriminant Analysis (LDA) are amongst the most popular statistical learning techniques. However, since their computation time increases cubically with the number of features, they are inefficient in high-dimensional neuroimaging datasets. Fortunately, for k-fo…
CIT and CIF improve feature selection for downstream prediction.
problem Feature selection bias in machine learning models.
method Conditional inference trees and forests with Bonferroni correction.
result CIF ranks top 3 among 18 regression methods and top 4 among 17 classification methods.
We present an efficient algorithm for simultaneously training sparse generalized linear models across many related problems, which may arise from bootstrapping, cross-validation and nonparametric permutation testing. Our approach leverages the redundancies across problems to obtain significant computational improvement…
Unified framework uses all data to improve multiple testing efficiency.
problem Improving predictive uncertainty control in decision-making.
method Uses all available data (null, alternative, unlabelled) for score construction and calibration.
result Significantly improves power and adaptability across diverse scenarios.
A new MMD-based test combines kernels for two-sample testing without splitting data.
problem Efficiently testing if two datasets come from the same distribution without splitting data.
method Proposes a novel statistic based on Maximum Mean Discrepancy (MMD) that combines kernels, proving concentration bounds and showing data-dependent kernel selection.
result Exponential concentration bounds and improved test power compared to existing methods.
Permutation-valued features arise in a variety of applications, either in a direct way when preferences are elicited over a collection of items, or an indirect way in which numerical ratings are converted to a ranking. To date, there has been relatively limited study of regression, classification, and testing problems …
Proposes Population Difference Criterion for visually observed subpopulation differences.
problem Statistical significance of visually observed subpopulation differences in high-dimensional and high-signal contexts.
method Balanced permutation approach and bootstrap confidence interval for quantifying uncertainty.
result Balanced permutation approach is more powerful in high-signal contexts.
New method corrects correlation bias in feature importance.
problem Correlations between features in high-dimensional data bias statistical and machine learning models.
method Pairwise Permutation Algorithm (PPA)
result PPA corrects correlation bias, identifying biological relevant biomarkers.
A new metric assesses causal graphs using node permutations to detect inconsistencies.
problem Quantifying the goodness of causal graphs and distinguishing them from random graphs.
method Constructing a baseline through node permutations and comparing inconsistencies.
result The proposed metric can distinguish between true and wrong causal graphs.
To date, testing interactions in high dimensions has been a challenging task. Existing methods often have issues with sensitivity to modeling assumptions and heavily asymptotic nominal p-values. To help alleviate these issues, we propose a permutation-based method for testing marginal interactions with a binary respons…
New framework compares credal sets for hypothesis testing with epistemic uncertainty.
problem Comparing distributions with partial ignorance and epistemic uncertainty.
method Credal two-sample testing framework for convex sets of probability measures.
result Direct integration of epistemic uncertainty in hypothesis testing.
The paper improves Fisher-Pitman tests for Poisson mixtures, detecting autism-related genes.
problem Detecting differentially expressed genes between autism and control subjects.
method Nonparametric Poisson mixtures and Fisher-Pitman permutation tests.
result The tests reveal genes missed by common methods, demonstrating rate optimality.