arXiv research

Conditional random fields (CRFs) have been shown to be one of the most successful approaches to sequence labeling. Various linear-chain neural CRFs (NCRFs) are developed to implement the non-linear node potentials in CRFs, but still keeping the linear-chain hidden structure. In this paper, we propose NCRF transducers, …

Extracts main content from web pages using neural sequence labeling.

We report an extension of a Keras Model, called CTCModel, to perform the Connectionist Temporal Classification (CTC) in a transparent way. Combined with Recurrent Neural Networks, the Connectionist Temporal Classification is the reference method for dealing with unsegmented input sequences, i.e. with data that are a co…

k-Nearest Neighbors is one of the most fundamental but effective classification models. In this paper, we propose two families of models built on a sequence to sequence model and a memory network model to mimic the k-Nearest Neighbors model, which generate a sequence of labels, a sequence of out-of-sample feature vecto…

Locally-contextual CRFs improve sequence labeling performance.

Artificial neural networks (ANNs) have gained a well-deserved popularity among machine learning tools upon their recent successful applications in image- and sound processing and classification problems. ANNs have also been applied for predicting the family or function of a protein, knowing its residue sequence. Here w…

Unlike images or videos data which can be easily labeled by human being, sensor data annotation is a time-consuming process. However, traditional methods of human activity recognition require a large amount of such strictly labeled data for training classifiers. In this paper, we present an attention-based convolutiona…

Deep Convolutional Neural Networks (DCNN) has shown excellent performance in a variety of machine learning tasks. This manuscript presents Deep Convolutional Neural Fields (DeepCNF), a combination of DCNN with Conditional Random Field (CRF), for sequence labeling with highly imbalanced label distribution. The widely-us…

Neural approaches to sequence labeling often use a Conditional Random Field (CRF) to model their output dependencies, while Recurrent Neural Networks (RNN) are used for the same purpose in other tasks. We set out to establish RNNs as an attractive alternative to CRFs for sequence labeling. To do so, we address one of t…

Automatic sleep staging has been often treated as a simple classification problem that aims at determining the label of individual target polysomnography (PSG) epochs one at a time. In this work, we tackle the task as a sequence-to-sequence classification problem that receives a sequence of multiple epochs as input and…

We propose a neural architecture with the main characteristics of the most successful neural models of the last years: bidirectional RNNs, encoder-decoder, and the Transformer model. Evaluation on three sequence labelling tasks yields results that are close to the state-of-the-art for all tasks and better than it for s…

Long Short-Term Memory (LSTM) is a recurrent neural network (RNN) architecture that has been designed to address the vanishing and exploding gradient problems of conventional RNNs. Unlike feedforward neural networks, RNNs have cyclic connections making them powerful for modeling sequences. They have been successfully u…

Multi-label classification (MLC) assigns multiple labels to each sample. Prior studies show that MLC can be transformed to a sequence prediction problem with a recurrent neural network (RNN) decoder to model the label dependency. However, training a RNN decoder requires a predefined order of labels, which is not direct…

Paper proposes semi-supervised learning using change points for sequence classification.

Tail-GNNs improve protein function prediction using relational reinforcement.

In this paper, we explore the ways to improve POS-tagging using various types of auxiliary losses and different word representations. As a baseline, we utilized a BiLSTM tagger, which is able to achieve state-of-the-art results on the sequence labelling tasks. We developed a new method for character-level word represen…

New method detects TC imagery patterns for rapid intensity change.

In several natural language tasks, labeled sequences are available in separate domains (say, languages), but the goal is to label sequences with mixed domain (such as code-switched text). Or, we may have available models for labeling whole passages (say, with sentiments), which we would like to exploit toward better po…

Recent studies have shown that neural models can achieve high performance on several sequence labelling/tagging problems without the explicit use of linguistic features such as part-of-speech (POS) tags. These models are trained only using the character-level and the word embedding vectors as inputs. Others have shown …

We consider the problem of training input-output recurrent neural networks (RNN) for sequence labeling tasks. We propose a novel spectral approach for learning the network parameters. It is based on decomposition of the cross-moment tensor between the output and a non-linear transformation of the input, based on score …

Multidimensional recurrent neural networks (MDRNNs) have shown a remarkable performance in the area of speech and handwriting recognition. The performance of an MDRNN is improved by further increasing its depth, and the difficulty of learning the deeper network is overcome by using Hessian-free (HF) optimization. Given…

Several machine learning problems arising in natural language processing can be modeled as a sequence labeling problem. We provide Gaussian process models based on pseudo-likelihood approximation to perform sequence labeling. Gaussian processes (GPs) provide a Bayesian approach to learning in a kernel based framework. …

Paper presents a method to train NER models without labelled data using weak supervision.

Graph Hawkes Neural Network forecasts evolving graph sequences.

Structured prediction energy networks (SPENs; Belanger & McCallum 2016) use neural network architectures to define energy functions that can capture arbitrary dependencies among parts of structured outputs. Prior work used gradient descent for inference, relaxing the structured output to a set of continuous variables a…

Unified model for sequence labeling and classification.

Complex textual information extraction tasks are often posed as sequence labeling or \emph{shallow parsing}, where fields are extracted using local labels made consistent through probabilistic inference in a graphical model with constrained transitions. Recently, it has become common to locally parametrize these models…

Sequence-to-Sequence (seq2seq) modeling has rapidly become an important general-purpose NLP tool that has proven effective for many text-generation and sequence-labeling tasks. Seq2seq builds on deep neural language modeling and inherits its remarkable accuracy in estimating local, next-word distributions. In this work…

Conditional Random Fields (CRF) are frequently applied for labeling and segmenting sequence data. Morency et al. (2007) introduced hidden state variables in a labeled CRF structure in order to model the latent dynamics within class labels, thus improving the labeling performance. Such a model is known as Latent-Dynamic…

Convolutional Neural Networks (CNNs) are effective models for reducing spectral variations and modeling spectral correlations in acoustic features for automatic speech recognition (ASR). Hybrid speech recognition systems incorporating CNNs with Hidden Markov Models/Gaussian Mixture Models (HMMs/GMMs) have achieved the …

Over the last few years, deep learning has revolutionized the field of machine learning by dramatically improving the state-of-the-art in various domains. However, as the size of supervised artificial neural networks grows, typically so does the need for larger labeled datasets. Recently, crowdsourcing has established …

Consider a general machine learning setting where the output is a set of labels or sequences. This output set is unordered and its size varies with the input. Whereas multi-label classification methods seem a natural first resort, they are not readily applicable to set-valued outputs because of the growth rate of the o…

Inertial information processing plays a pivotal role in ego-motion awareness for mobile agents, as inertial measurements are entirely egocentric and not environment dependent. However, they are affected greatly by changes in sensor placement/orientation or motion dynamics, and it is infeasible to collect labelled data …

Learned factor graphs improve inference from time sequences using neural networks.

Gene annotation has traditionally required direct comparison of DNA sequences between an unknown gene and a database of known ones using string comparison methods. However, these methods do not provide useful information when a gene does not have a close match in the database. In addition, each comparison can be costly…

Improved neural transducer model outperforms attention model on longer sequences.

This study improves knowledge distillation for RNN-T models with noisy labels.

Inducing sparseness while training neural networks has been shown to yield models with a lower memory footprint but similar effectiveness to dense models. However, sparseness is typically induced starting from a dense model, and thus this advantage does not hold during training. We propose techniques to enforce sparsen…

We propose a multi-label multi-task framework based on a convolutional recurrent neural network to unify detection of isolated and overlapping audio events. The framework leverages the power of convolutional recurrent neural network architectures; convolutional layers learn effective features over which higher recurren…

In many machine learning scenarios, supervision by gold labels is not available and consequently neural models cannot be trained directly by maximum likelihood estimation (MLE). In a weak supervision scenario, metric-augmented objectives can be employed to assign feedback to model outputs, which can be used to extract …

This paper reviews deep time-series forecasting focusing on autocorrelation modeling.

We combine multi-task learning and semi-supervised learning by inducing a joint embedding space between disparate label spaces and learning transfer functions between label embeddings, enabling us to jointly leverage unlabelled data and auxiliary, annotated datasets. We evaluate our approach on a variety of sequence cl…

State-of-the-art sequence labeling systems traditionally require large amounts of task-specific knowledge in the form of hand-crafted features and data pre-processing. In this paper, we introduce a novel neutral network architecture that benefits from both word- and character-level representations automatically, by usi…

Globally normalized neural sequence models are considered superior to their locally normalized equivalents because they may ameliorate the effects of label bias. However, when considering high-capacity neural parametrizations that condition on the whole input sequence, both model classes are theoretically equivalent in…

We propose a model for tagging unstructured texts with an arbitrary number of terms drawn from a tree-structured vocabulary (i.e., an ontology). We treat this as a special case of sequence-to-sequence learning in which the decoder begins at the root node of an ontological tree and recursively elects to expand child nod…

Motivation: Drug discovery demands rapid quantification of compound-protein interaction (CPI). However, there is a lack of methods that can predict compound-protein affinity from sequences alone with high applicability, accuracy, and interpretability. Results: We present a seamless integration of domain knowledges and …

Efficient label acquisition processes are key to obtaining robust classifiers. However, data labeling is often challenging and subject to high levels of label noise. This can arise even when classification targets are well defined, if instances to be labeled are more difficult than the prototypes used to define the cla…

This paper examines error bounds for deep learning classifiers with noisy labels.