Deep learning model extracts medical treatment-problem relationships.
problem Mining relationships between treatments and medical problems.
method Hybrid approach combining deep learning and rule-based systems.
result System achieved promising performance on medical relation extraction task.
Automated system extracts medication regimens from medical conversations.
problem Extract relevant medication information from medical conversations.
method QA task approach, combined QA and Information Extraction, data augmentation, public embeddings, pretraining.
result Improved accuracy in extracting dosage and frequency from 54.28 and 37.13 to 89.57 and 45.94.
Hi-RES framework extracts medical relations from articles and EHRs.
problem Manual annotation bottleneck in relation extraction.
method Labeling sentences, creating improved negative samples, using pretrained language models, and combining EHR embeddings.
result Significant accuracy increases in relation extraction, up to 0.998 for disorder-location relations.
Inpatient2Vec learns representations for inpatients with multi-layer self-attention.
problem Lack of specialized RL methods for inpatient data with strong temporal relations and consistent diagnoses.
method Inpatient2Vec uses a multi-layer self-attention mechanism with two training tasks to learn medical activity, hospital day, and diagnosis representations for inpatients.
result Inpatient2Vec outperforms baselines on semantic similarity and clinical events prediction tasks.
Deep learning method extracts medical knowledge from YouTube videos.
problem Improving healthcare information dissemination through machine learning.
method Developed a deep learning method to classify YouTube videos by medical knowledge level.
result Preliminary results show satisfactory performance in extracting medical knowledge from videos.
ConCare personalizes healthcare predictions by capturing EMR features.
problem Predicting patient outcomes from EMR data with personalization.
method Captures personal characteristics and time-aware distribution in EMR data.
result Improves healthcare prediction accuracy through personalized health context.
Unified deep learning predicts Parkinson's disease from medical images.
problem Diagnosing Parkinson's disease accurately from medical images.
method Transfer learning and domain adaptation using deep convolutional and recurrent neural networks.
result The approach effectively predicts Parkinson's disease across different medical environments.
New method predicts Parkinson's using deep neural network latent info.
problem Medical diagnosis of Parkinson's disease.
method Transfer learning, k-means clustering, k-Nearest Neighbour classification of DNN representations.
result Improved prediction of Parkinson's disease based on MRI and DaT Scan data.
Online health communities are a valuable source of information for patients and physicians. However, such user-generated resources are often plagued by inaccuracies and misinformation. In this work we propose a method for automatically establishing the credibility of user-generated medical statements and the trustworth…
LSTM model detects voice disorders with high accuracy.
problem Automated detection of voice disorders is challenging due to continuous audio data.
method Used Long Short Term Memory (LSTM) model for feature extraction and classification of voice disorders.
result 22% sensitivity, 97% specificity, 56% unweighted average recall.
Motivated by the need to automate medical information extraction from free-text radiological reports, we present a bi-directional long short-term memory (BiLSTM) neural network architecture for modelling radiological language. The model has been used to address two NLP tasks: medical named-entity recognition (NER) and …
This research predicts diabetes mellitus using machine learning techniques.
problem Early prediction of diabetes mellitus to control and save human life.
method Exploring various risk factors related to diabetes using four machine learning algorithms (SVM, NB, KNN, C4.5 Decision Tree) on adult population data.
result C4.5 decision tree achieved higher accuracy in predicting diabetic mellitus.
Study uses social media analytics to identify exercise-related topics.
problem Understanding exercise-related discussions on social media.
method Data collection, topic modeling, and data annotation.
result 86% of detected topics were meaningful after annotation.
Improved named entity recognition in EHRs with transfer learning.
problem Scarce annotated datasets for named entity recognition in EHRs.
method Transfer learning and neural network embeddings.
result 94.6 F1 score in I2B2 2009 Medical Extraction Challenge.
MedCAT extracts valuable medical information from unstructured text.
problem Extracting structured information from unstructured biomedical documents.
method Unsupervised machine learning for disambiguation of entities.
result Improved entity detection and linking compared to existing tools.
CovidCare uses EMR data to predict patient outcomes in emerging epidemics.
problem Intelligent prognosis for patients with emerging infectious diseases during rapid epidemics.
method Transfer learning and knowledge distillation from existing EMR data.
result CovidCare outperforms baseline methods in predicting patient length of stay.
CNNs improve medical image classification with few samples.
problem Classifying medical images with limited training data.
method Transfer learning using CNNs, representation extraction, and a novel metric for performance prediction.
result CNN-based transfer learning outperforms feature-based methods with high correlation to test set performance.
Develops machine learning models for clinical predictions from complex health data.
problem Complexity and uncertainty in medical data.
method Statistical Relational Learning approaches.
result Outstanding performance in medical research and real-world applications.
Learning from electronic medical records (EMR) is challenging due to their relational nature and the uncertain dependence between a patient's past and future health status. Statistical relational learning is a natural fit for analyzing EMRs but is less adept at handling their inherent latent structure, such as connecti…
The widespread availability of electronic health records (EHRs) promises to usher in the era of personalized medicine. However, the problem of extracting useful clinical representations from longitudinal EHR data remains challenging. In this paper, we explore deep neural network models with learned medical feature embe…
System assesses patient urgency and recommends care based on medical notes.
problem Assessing patient urgency and recommending appropriate care.
method Attention-based convolutional neural network trained on medical notes.
result Precision increases to 85% when using attention scores for warning symptoms.
AI predicts medical specialty diagnostic choices from EHR records.
problem Predicting timely medical specialty diagnostic workups for patients.
method Ensemble of feed-forward neural networks trained on EHR data.
result Significantly higher accuracy compared to traditional checklists.
This study evaluates a health knowledge graph for robustness in EHRs.
problem Evaluate robustness of a health knowledge graph in EHRs.
method Analyze sample size, unmeasured confounders, and non-linear functions.
result Identify sample size and unmeasured confounders as major sources of error.
Model creates summaries of patient notes to save time and reduce errors.
problem Improper summarization of patient notes leads to inefficiencies and errors.
method Developed an LSTM model to sequentially label topics in history of present illness notes.
result Achieved an F1 score of 0.876, indicating the model's effectiveness.
ODVICE augments EHR cohorts using ontology to improve analysis robustness.
problem Limited records in cohorts for rare diseases hamper robust analysis.
method Ontology-driven Monte-Carlo graph spanning algorithm for data augmentation.
result ODVICE augmented cohorts show ~30% improvement in AUC over non-augmented datasets.
Improves medical note processing by training model on related concepts and global context.
problem Scarce and imbalanced labeled training data limits generalizability of automated abbreviation disambiguation models.
method Data augmentation using related medical concepts and global context information within medical notes.
result Model accuracy improved by almost 14% on CASI dataset and 4% on i2b2 dataset.
Paper proposes a method to extract disentangled features for multi-task learning in medical images.
problem Indiscriminate mixing of image properties leads to poor generalization in deep learning.
method Uses deep neural networks and adversarial regularization to disentangle features.
result Demonstrates improved performance on images with new properties like artifacts.
Machine learning constructs problem-based medical records from electronic health records.
problem Difficulty in finding relevant medical information for clinical questions.
method Knowledge base completion using machine learning on electronic health records.
result Automatic construction of problem-based groupings of medications, procedures, and lab tests.
A new model improves relation extraction accuracy through relation-gated adversarial learning.
problem Relation extraction from sentences is challenging due to expensive human annotation and noisy distant supervision.
method Proposes relation-gated adversarial learning for relation extraction, extending domain adaptation methods.
result The model outperforms previous domain adaptation methods and improves accuracy of distance supervised relation extraction.
Machine vision-guided 3D medical image compression improves segmentation accuracy.
problem High data traffic and computation costs in cloud-based medical image analysis.
method Developed a machine vision-oriented 3D image compression framework for medical segmentation.
result Significantly higher segmentation accuracy at the same compression rate or better compression rate under the same accuracy.
Feature engineering remains a major bottleneck when creating predictive systems from electronic medical records. At present, an important missing element is detecting predictive regular clinical motifs from irregular episodic records. We present Deepr (short for Deep record), a new end-to-end deep learning system that …
The paper explores methods to explain brain tumor segmentation models and extract visualizations.
problem Improving interpretability of deep learning models for brain tumor segmentation.
method Exploring techniques to explain brain tumor segmentation models and extract visualizations.
result Brain tumor segmentation networks learn human-understandable disentangled concepts and use a top-down approach.
Medical researchers are coming to appreciate that many diseases are in fact complex, heterogeneous syndromes composed of subpopulations that express different variants of a related complication. Time series data extracted from individual electronic health records (EHR) offer an exciting new way to study subtle differen…
Framework harmonizes EHR data across institutions for better analysis.
problem Heterogeneity of medical codes and terminologies hinder EHR data analysis.
method MASH (Multi-source Automated Structured Hierarchy) uses neural optimal transport and learned hyperbolic embeddings to align and structure EHR data.
result MASH generates interpretable hierarchical graphs for unstructured local laboratory codes.
New framework extracts useful information from tensor data with structural properties.
problem Extract useful information from tensor data with structural properties.
method Proposed an additive tensor decomposition (ATD) framework and an ADMM algorithm to solve the high dimensional optimization problem.
result Versatile and effective framework demonstrated in simulations and real medical image analysis.
In healthcare applications, temporal variables that encode movement, health status and longitudinal patient evolution are often accompanied by rich structured information such as demographics, diagnostics and medical exam data. However, current methods do not jointly optimize over structured covariates and time series …
Deep learning is a branch of artificial intelligence where networks of simple interconnected units are used to extract patterns from data in order to solve complex problems. Deep learning algorithms have shown groundbreaking performance in a variety of sophisticated tasks, especially those related to images. They have …
Deep learning improves automatic image segmentation.
problem Automatic object localization and boundary delineation in images and medical scans.
method Proposed and evaluated novel dilated dense encoder-decoder architectures for salient object segmentation and lesion localization in medical images.
result Proposed architectures outperform state-of-the-art models in accuracy and efficiency.
CURE extracts relations without supervision by clustering similar entity pairs.
problem Extracting relations unsupervised without considering sentence correlations.
method CURE uses Encoder-Decoder architecture for self-supervised learning and clustering similar relations.
result CURE outperforms state-of-the-art models on NYT and UNPC datasets.
Study predicts colorectal polyp recurrence using medical records and statistical models.
problem Identifying patient characteristics influencing colorectal polyp recurrence.
method Natural language processing for extracting polyp characteristics, Kaplan-Meier curves, Cox proportional hazards modeling, random survival forest models.
result Polyp size, number, location, and patient smoking status significantly influence recurrence risk.
3D dataset for intracranial aneurysms aids deep learning applications.
problem Lack of 3D medical datasets for deep learning.
method Developed an open-access 3D dataset, IntrA, for intracranial aneurysms.
result Demonstrated the challenges and performance of 3D medical datasets.
Paper uses AC-GAN to generate high-quality relational sentences for relation extraction.
problem Limited training data for relation extraction models.
method Auxiliary Classifier Generative Adversarial Networks (AC-GANs).
result Significantly improved performance of relation extraction.
Neural networks enhance relation extraction from biomedical literature.
problem Automated extraction of relations between biomedical concepts.
method Use of multichannel architectures in deep neural networks with biomedical ontologies.
result State-of-the-art results in relation extraction tasks.
HRTPP improves TPP interpretability and accuracy in medical event modeling.
problem Lack of interpretability in TPPs for medical event sequences.
method Hybrid-Rule Temporal Point Processes (HRTPP) integrating temporal logic rules and numerical features.
result HRTPP outperforms state-of-the-art interpretable TPPs in predictive performance and clinical interpretability.
Novel unsupervised relation extraction framework using BERT.
problem Relation extraction without supervision.
method Syntactic parsing, pre-trained embeddings, distant supervision, fine-tuning BERT.
result Significantly outperforms baselines and matches state-of-the-art in three out of four data sets.
Over 50 million scholarly articles have been published: they constitute a unique repository of knowledge. In particular, one may infer from them relations between scientific concepts, such as synonyms and hyponyms. Artificial neural networks have been recently explored for relation extraction. In this work, we continue…
Enhances medical code predictions for multi-morbidity patients using text classification.
problem Improving accuracy in predicting medical codes for patients with multiple illnesses.
method Used machine learning techniques, including multi-label medical text classification, to enhance predictions.
result High dimensional embeddings pre-trained on health data significantly improve multi-label classification performance.
This Perspective provides examples of current and future applications of deep learning in pharmacogenomics, including: (1) identification of novel regulatory variants located in noncoding domains and their function as applied to pharmacoepigenomics; (2) patient stratification from medical records; and (3) prediction of…