Improves biomedical entity linking with latent type modeling.
arXiv research
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DCRL learns causal relationships from mixed-type discrete data.
Two types of nonidentifiability in latent position graphs identified and characterized.
This paper generalizes graph representation for diverse data types.
Deep Discrete Encoders (DDEs) tackle interpretable generative models for rich data with discrete latent layers.
We present the Mixed Likelihood Gaussian process latent variable model (GP-LVM), capable of modeling data with attributes of different types. The standard formulation of GP-LVM assumes that each observation is drawn from a Gaussian distribution, which makes the model unsuited for data with e.g. categorical or nominal a…
Modeling continuous movement of entities in latent space for interaction timing.
Paper extends FOFC algorithm to work with mixed data types.
In many statistical problems, a more coarse-grained model may be suitable for population-level behaviour, whereas a more detailed model is appropriate for accurate modelling of individual behaviour. This raises the question of how to integrate both types of models. Methods such as posterior regularization follow the id…
This paper aims at the problem of link pattern prediction in collections of objects connected by multiple relation types, where each type may play a distinct role. While common link analysis models are limited to single-type link prediction, we attempt here to capture the correlations among different relation types and…
Estimates latent norms and Gram matrices for graphs on Euclidean balls.
In this note we present a generative model of natural images consisting of a deep hierarchy of layers of latent random variables, each of which follows a new type of distribution that we call rectified Gaussian. These rectified Gaussian units allow spike-and-slab type sparsity, while retaining the differentiability nec…
Bayesian model fuses diverse microbiome data types.
Quantitatively assessing relationships between latent variables and observed variables is important for understanding and developing generative models and representation learning. In this paper, we propose latent-observed dissimilarity (LOD) to evaluate the dissimilarity between the probabilistic characteristics of lat…
New method for mixed data types in graphical models.
EFA extends self-attention to handle mixed data types and dynamic relevance.
Neural circuits contain heterogeneous groups of neurons that differ in type, location, connectivity, and basic response properties. However, traditional methods for dimensionality reduction and clustering are ill-suited to recovering the structure underlying the organization of neural circuits. In particular, they do n…
Generative autoencoders offer a promising approach for controllable text generation by leveraging their latent sentence representations. However, current models struggle to maintain coherent latent spaces required to perform meaningful text manipulations via latent vector operations. Specifically, we demonstrate by exa…
Paper relaxes identifiability conditions for causal models with latent variables.
We investigate a class of feature allocation models that generalize the Indian buffet process and are parameterized by Gibbs-type random measures. Two existing classes are contained as special cases: the original two-parameter Indian buffet process, corresponding to the Dirichlet process, and the stable (or three-param…
We propose a probabilistic model to infer supervised latent variables in the Hamming space from observed data. Our model allows simultaneous inference of the number of binary latent variables, and their values. The latent variables preserve neighbourhood structure of the data in a sense that objects in the same semanti…
We propose a kernel-based nonparametric test of relative goodness of fit, where the goal is to compare two models, both of which may have unobserved latent variables, such that the marginal distribution of the observed variables is intractable. The proposed test generalizes the recently proposed kernel Stein discrepanc…
The paper optimizes portfolios using MACD signals derived from price history.
New LVMs optimize any exponential family distribution without specific assumptions.
Refines deep generative models to improve data density precision.
Develops a new method for nonlinear dimension reduction using random features.
This text explores strategies for learning discrete latent structures in neural networks.
Deep generative models are universal tools for learning data distributions on high dimensional data spaces via a mapping to lower dimensional latent spaces. We provide a study of latent space geometries and extend and build upon previous results on Riemannian metrics. We show how a class of heuristic measures gives mor…
Multitask learning algorithms are typically designed assuming some fixed, a priori known latent structure shared by all the tasks. However, it is usually unclear what type of latent task structure is the most appropriate for a given multitask learning problem. Ideally, the "right" latent task structure should be learne…
Electronic health records (EHR) are rich heterogeneous collection of patient health information, whose broad adoption provides great opportunities for systematic health data mining. However, heterogeneous EHR data types and biased ascertainment impose computational challenges. Here, we present mixEHR, an unsupervised g…
We consider learning the possible causal direction of two observed variables in the presence of latent confounding variables. Several existing methods have been shown to consistently estimate causal direction assuming linear or some type of nonlinear relationship and no latent confounders. However, the estimation resul…
Unified sampling approach for Bayesian imaging problems.
Unified framework for disentangled VAEs improves latent space interpretability.
Generative model for SSc disease trajectories using deep learning.
We consider analysis of relational data (a matrix), in which the rows correspond to subjects (e.g., people) and the columns correspond to attributes. The elements of the matrix may be a mix of real and categorical. Each subject and attribute is characterized by a latent binary feature vector, and an inferred matrix map…
Proposes a new model to handle latent structure methods.
Proposes FARM model combining latent factor and sparse regression.
The paper proposes a deep generative model for complex disease trajectories.
This paper improves spectral embedding for multipartite networks, revealing latent subspaces and providing consistent node representations.
Paper presents a framework for learning generative models with structured latent factors.
Paper shows how SFA fits into FBM framework for time series separation.
The paper presents efficient methods for identifying causal graphs with latent variables.
Hierarchical Latent Attribute Models (HLAMs) are a family of discrete latent variable models that are attracting increasing attention in educational, psychological, and behavioral sciences. The key ingredients of an HLAM include a binary structural matrix and a directed acyclic graph specifying hierarchical constraints…
Latent Dirichlet Allocation models discrete data as a mixture of discrete distributions, using Dirichlet beliefs over the mixture weights. We study a variation of this concept, in which the documents' mixture weight beliefs are replaced with squashed Gaussian distributions. This allows documents to be associated with e…
Hierarchical statistical models are widely employed in information science and data engineering. The models consist of two types of variables: observable variables that represent the given data and latent variables for the unobservable labels. An asymptotic analysis of the models plays an important role in evaluating t…
New method improves uncertainty quantification in latent variable models.
Develops a new VAE for mixed-curvature latent spaces.
The paper tackles model collapse in GPLVMs by improving kernel flexibility and projection variance.