arXiv research

Paper improves zero-shot protein stability prediction by clarifying free-energy foundations.

Fold maps are higher dimensional versions of Morse functions, which play important roles in the studies of smooth manifolds, and such general maps also have been fundamental tools in the studies of smooth manifolds by using generic maps. In this paper, we study {\it simple} fold maps, which are fold maps such that any …

We study positivity in the conjecture proposed by Lejmi and Székelyhidi on finding effective necessary and sufficient conditions for solvability of the inverse $σ_k$ equation, or equivalently, for convergence of the inverse $σ_k$-flow. In particular, for the inverse $σ_{n-1}$-flow we partially verify their conjecture b…

A new method for unfolding histograms without matrix inversion.

In this paper, as a fundamental study on the theory of Morse functions and their higher dimensional versions or fold maps and applications to geometric theory of manifolds, which were started in 1950s by differential topologists such as Thom and Whitney and have been studied actively, we study algebraic and differentia…

This work combines machine learning with physical models to solve inverse problems efficiently.

Non-autoregressive method speeds up protein folding prediction 23 times.

Solving the RNA inverse folding problem is a critical prerequisite to RNA design, an emerging field in bioengineering with a broad range of applications from reaction catalysis to cancer therapy. Although significant progress has been made in developing machine-based inverse RNA folding algorithms, current approaches s…

In the singularity and differential topological theory of Morse functions and higher dimensional versions or fold maps and application to algebraic and differential topology of manifolds, constructing explicit fold maps and investigating their source manifolds is fundamental, important and difficult. The author has int…

Study shows invariant curves in tubular origami dynamics, revealing geometric barriers to folding transitions.

Optimal data splitting improves covariance matrix estimation in large datasets.

This research improves neural likelihood approximation for Bayesian inverse problems.

Let $g$ be a Riemannian metric for $\mathbf{R}^d$ ($d\geq 3$) which differs from the Euclidean metric only in a smooth and strictly convex bounded domain $M$. The lens rigidity problem is concerned with recovering the metric $g$ inside $M$ from the corresponding lens relation on the boundary $\partial M$. In this paper…

The paper details local forms of morphisms in colored supermanifolds.

We introduce an invariant of tangles in Khovanov homology by considering a natural inverse system of Khovanov homology groups. As application, we derive an invariant of strongly invertible knots; this invariant takes the form of a graded vector space that vanishes if and only if the strongly invertible knot is trivial.…

Fold maps are higher dimensional versions of Morse functions and fundamental and important tools in studying algebraic and differential topological properties of manifolds: as the theory established by Morse and the higher dimensional version, started by Thom and Whitney, later actively studied by Eliashberg, Levine et…

We study surface knots in 4-space by using generic planar projections. These projections have fold points and cusps as their singularities and the image of the singular point set divides the plane into several regions. The width (or the total width) of a surface knot is a numerical invariant related to the number of po…

Study on folded ribbon knots and their minimum length.

This paper is a follow-up to an earlier paper math.DG/0410260 on desingularizations of Calabi-Yau 3-folds with a conical singularity. In math.DG/0410260 we study Calabi-Yau 3-folds M_0 with a conical singularity at x modelled on some Calabi-Yau cone V, and construct a desingularization of M_0 by gluing in an Asymptotic…

We give a global formulation of the coupling of four-dimensional scalar sigma models to Abelian gauge fields for the generalized situation when the "duality structure" of the Abelian gauge theory is described by a flat symplectic vector bundle $(\mathcal{S},D,ω)$ defined over the scalar manifold $\mathcal{M}$. The cons…

Upper bounds on ribbonlength of various knots, showing linear and sub-linear behavior.

This paper is concerned with the numerical solution of model-based, Bayesian inverse problems. We are particularly interested in cases where the cost of each likelihood evaluation (forward-model call) is expensive and the number of un- known (latent) variables is high. This is the setting in many problems in com- putat…

Study on the ribbonlength of knots and links, improving upper bounds.

P3I learns holistic scene representations from a single image.

Study on ribbonlength and crossing number for folded ribbon knots.

This is the second in a series of papers constructing explicit examples of special Lagrangian submanifolds in C^m. The first paper was math.DG/0008021, which studied special Lagrangian m-folds with large symmetry groups. The third is math.DG/0010036, which uses ideas from this paper to construct families of special Lag…

K-fold CV improves machine learning model selection but faces challenges with small datasets.

We prove the existence of asymptotically cylindrical (ACyl) Calabi-Yau 3-folds starting with (almost) any deformation family of smooth weak Fano 3-folds. This allow us to exhibit hundreds of thousands of new ACyl Calabi-Yau 3-folds; previously only a few hundred ACyl Calabi-Yau 3-folds were known. We pay particular att…

This paper finds bounds on the ribbonlength of knots and links with up to 9 crossings.

For a given complex n-fold M we present an explicit construction of all complex (n+1)-folds which are principal holomorphic T2-fibrations over M. For physical applications we consider the case of M being a Calabi-Yau 2-fold. We show that for such M, there is a subclass of the 3-folds that we construct, which has natura…

This paper presents a sequential randomized lowrank matrix factorization approach for incrementally predicting values of an unknown function at test points using the Gaussian Processes framework. It is well-known that in the Gaussian processes framework, the computational bottlenecks are the inversion of the (regulariz…

This is a survey paper of author's results on cobordism groups and semigroups of fold maps and simple fold maps. The results include: establishing a relation between fold maps and immersions through geometrical invariants of cobordism classes of fold maps and simple fold maps in terms of immersions with prescribed norm…

We study Kauffman's model of folded ribbon knots: knots made of a thin strip of paper folded flat in the plane. The ribbonlength is the length to width ratio of such a ribbon, and it turns out that the way the ribbon is folded influences the ribbonlength. We give an upper bound of $n\cot(π/n)$ for the ribbonlength of $…

This paper gives a leisurely introduction to Calabi-Yau manifolds and special Lagrangian submanifolds from the differential geometric point of view, followed by a survey of recent results on singularities of special Lagrangian submanifolds, and their application to the SYZ Conjecture. It is aimed at graduate students i…

This paper confirms a bound for folded ribbonlength of 2-bridge knots.

We derive formulas for the mean curvature of associative 3-folds, coassociative 4-folds, and Cayley 4-folds in the general case where the ambient space has intrinsic torsion. Consequently, we are able to characterize those G2-structures (resp., Spin(7)-structures) for which every associative 3-fold (resp. coassociative…

The paper proves the existence of a folded annulus with multiple creases.

We speed up Gaussian process cross-validation calculations and improve model diagnostics.

Improved off-policy selection and learning in contextual bandits with better guarantees.

First steps towards a classification of irreducible symplectic 4-folds whose integral 2-cohomology with 4-tuple cup product is isomorphic to that of Hilb^2(K3). We prove that any such 4-fold deforms to an irreducible symplectic 4-fold of Type A or Type B. A 4-fold of Type A is a double cover of a (singular) sextic hype…

Paper proves structure of compact Kähler 3-folds with specific bundles.

Enhanced coloring invariant distinguishes folded molecular chain topologies.

This survey reviews Kauffman's model of folded ribbon knots: knots made of a thin strip of paper folded flat in the plane. The ribbonlength is the length to width ratio of such a ribbon, and the ribbonlength problem asks to minimize the ribbonlength for a given knot type. We give a summary of known results. For the mos…

Origami can create complex knots, with minimum creases defining a new knot invariant.

New contact structures on folded sums of contact mapping tori are tight under certain conditions.

Every oriented 4-manifold admits a folded symplectic structure, which in turn determines a homotopy class of compatible almost complex structures that are discontinuous across the folding hypersurface ("fold") in a controlled fashion. We define folded holomorphic maps, i.e. pseudo-holomorphic maps that are discontinuou…

A framework detects where constitutive models fail in elastography, improving clinical interpretation.

A smooth map having only fold singularities is called a fold-map. We will give effective conditions for a continuous map to be homotopic to a fold-map from the viewpoint of the homotopy principle.