Graph neural networks improve El Niño forecasts.
problem Improving seasonal forecasting accuracy for El Niño-Southern Oscillation.
method Designing a novel graph connectivity learning module to model large-scale spatial interactions with ENSO forecasting.
result Our model \graphino outperforms state-of-the-art models for forecasts up to six months ahead.
MaGNet integrates local and global graph information for interpretable results.
problem Lack of interpretability and inability to learn varying-order representations in GNNs.
method Model-agnostic Graph Neural Network (MaGNet) framework integrating estimation and interpretation models.
result MaGNet effectively integrates information of various orders and provides meaningful, interpretable results.
GMT improves interpretability of XGNNs by approximating SubMT.
problem Limited understanding of existing interpretable subgraph learning methods.
method Formulated subgraph multilinear extension (SubMT) and designed GMT architecture.
result GMT outperforms state-of-the-art in both interpretability and generalizability.
engGNN combines external and generated graphs to improve disease classification and biomarker discovery.
problem Challenges in integrating omics data due to high dimensionality and small sample sizes.
method Dual-graph framework that integrates external biological networks with data-driven generated graphs.
result engGNN outperforms state-of-the-art methods in disease classification and biomarker discovery.
MOTGNN integrates multi-omics data for disease classification with improved accuracy and interpretability.
problem Challenges in integrating multi-omics data due to high dimensionality, heterogeneity, and lack of reliable interaction networks.
method MOTGNN uses XGBoost for graph construction, modality-specific GNNs for representation learning, and a deep feedforward network for cross-omics integration.
result MOTGNN outperforms state-of-the-art baselines by 5-10% in accuracy, ROC-AUC, and F1-score across three real-world disease datasets.
GISST interprets GNNs by combining attention and sparsity for graph structure and node feature importance.
problem Lack of joint consideration of graph structure and node features in GNN interpretation.
method Model-agnostic framework using attention mechanism and sparsity regularization.
result GISST achieves superior node feature and edge explanation precision in synthetic and real-world datasets.
BetaExplainer improves GNN interpretability by masking unimportant edges.
problem Interpreting GNNs' predictions is difficult due to black-box behavior and lack of uncertainty quantification.
method BetaExplainer uses a sparsity-inducing prior to mask unimportant edges during training.
result BetaExplainer provides uncertainty in edge importance and improves predictive accuracy on challenging datasets.
Sparse molecular representations improve interpretability in graph neural networks.
problem Difficulty in understanding which molecular graph aspects drive deep learning predictions.
method Constrain weights in a graph convolutional neural network using the Gini index to maximize representation inequality.
result The Gini-constrained approach does not degrade evaluation metrics and allows for interpretable representation combination.
Graph Neural Networks improve El Niño forecasts.
problem Improving seasonal forecasting models for ENSO.
method Application of spatiotemporal Graph Neural Networks.
result Preliminary results outperform state-of-the-art systems for 1 and 3-month projections.
Graph neural networks help assess how global changes affect plant-pollinator networks.
problem Interpreting GNN results to understand how global changes impact plant-pollinator networks.
method Simulation study and application on Spipoll dataset to assess effects of global changes on pollination networks.
result GNNs can detect interactive effects between covariates and plant genera on pollination network connectivity.
SLIM model tackles graph classification by resolving part-interaction dilemmas.
problem Difficulty in modeling graph parts and their interactions in graph classification.
method SLIM model, which solves resolution dilemmas and leverages explicit interactions.
result SLIM offers improved interpretability, accuracy, and new insights in graph representation learning.
Relational Graph Neural Networks improve fraud detection in Super-Apps.
problem Fraud detection in Super-Apps using alternative data.
method Relational Graph Convolutional Networks applied to heterogeneous graphs.
result Added value in fraud detection when considering alternative data and interactions.
RAW-Explainer generates interpretable subgraph explanations for link predictions in knowledge graphs.
problem Interpreting GNN predictions for link prediction in heterogeneous settings is challenging.
method RAW-Explainer uses random walk objective and neural network to generate connected, concise subgraph explanations.
result RAW-Explainer strikes a balance between explanation quality and computational efficiency.
Bayesian neural networks learn graph structure with interpretable parameters.
problem Learning graph structure from nodal observations in data with uncertainty.
method Introduces novel iterations with independently interpretable parameters and Bayesian neural networks.
result Bayesian neural networks provide well-calibrated uncertainty quantification on graph structure.
GraphLIME explains GNN models by selecting key features locally.
problem Explaining the effectiveness of GNN models is challenging due to complex nonlinear transformations.
method GraphLIME uses HSIC Lasso for nonlinear feature selection in GNN models.
result GraphLIME provides more descriptive explanations than existing methods.
We present graph wavelet neural network (GWNN), a novel graph convolutional neural network (CNN), leveraging graph wavelet transform to address the shortcomings of previous spectral graph CNN methods that depend on graph Fourier transform. Different from graph Fourier transform, graph wavelet transform can be obtained …
Bayesian optimisation with graph kernels improves neural architecture search and provides interpretability.
problem Lack of insight into why architectures perform well and how to improve them.
method Combines Bayesian optimisation with Weisfeiler-Lehman graph kernels for highly data-efficient and interpretable architecture search.
result Demonstrates state-of-the-art performance on closed- and open-domain search spaces.
Proposes a new CG interpretation of neural networks for better theoretical analysis.
problem Lack of theoretical analysis in neural networks interpretation.
method Interprets neural networks as chain graphs and feed-forward as approximate inference.
result Provides novel theoretical support and insights for various neural network techniques.
HSIC-based method explains GNN structures.
problem Interpreting GNNs' complex dynamics.
method Flexible model-agnostic explanation using HSIC.
result Identifies crucial structures in GNNs.
Paper tackles uncertainty in GNNs for graph data.
problem Uncertainty in GNNs' predictions for graph data.
method CF-T2NN, tensor decomposition, topological learning.
result CF-T2NN improves reliability and interpretability of GNN outcomes.
Researchers develop a method to interpret GNNs by identifying unnecessary edges in NLP models.
problem Understanding which parts of graphs contribute to NLP model predictions.
method A post-hoc method using differentiable edge masking to identify and drop unnecessary edges.
result Large proportions of edges can be dropped without affecting model performance, providing insights into model predictions.
TopInG improves graph interpretability using persistent homology.
problem Lack of interpretability in Graph Neural Networks (GNNs).
method TopInG uses persistent homology to identify persistent rationale subgraphs in graphs.
result TopInG improves predictive accuracy and interpretability compared to state-of-the-art methods.
Survey on understanding neural networks for medical applications.
problem Black-box nature of deep neural networks hinders their use in critical applications.
method Comprehensive review of interpretability studies in neural networks.
result Interpretability research is crucial for the acceptance of neural networks in medical diagnosis.
While neural networks are powerful approximators used to classify or embed data into lower dimensional spaces, they are often regarded as black boxes with uninterpretable features. Here we propose Graph Spectral Regularization for making hidden layers more interpretable without significantly impacting performance on th…
Interpretability has emerged as a crucial aspect of building trust in machine learning systems, aimed at providing insights into the working of complex neural networks that are otherwise opaque to a user. There are a plethora of existing solutions addressing various aspects of interpretability ranging from identifying …
MFCNs use sparse graphs to approximate manifold convergence.
problem Understanding manifold neural networks (MNNs).
method Sparse graph approximation for manifold convergence.
result Method converges to continuum limit as data points increase.
In this work, we provide a new formulation for Graph Convolutional Neural Networks (GCNNs) for link prediction on graph data that addresses common challenges for biomedical knowledge graphs (KGs). We introduce a regularized attention mechanism to GCNNs that not only improves performance on clean datasets, but also favo…
PHLP uses persistent homology to interpret graph link prediction.
problem Interpreting why graph neural network models perform well in link prediction.
method Employing persistent homology to analyze graph topology and extract features.
result PHLP outperforms state-of-the-art models on most benchmark datasets.
Proposes a method to improve GNN predictions by finding the most predictive subgraph.
problem GNNs aggregate all nodes and edges, making predictions hard to interpret.
method Uses reinforcement learning to find a sparse subgraph that optimizes graph classification performance.
result Our method finds sparser subgraphs that improve interpretability while maintaining performance.
CI-GNN uses GNNs to diagnose psychiatric disorders by identifying causally relevant brain regions.
problem Leveraging GNNs for psychiatric diagnosis requires interpretable models to understand decision-making.
method CI-GNN integrates Granger causality into GNNs to identify causally relevant subgraphs.
result CI-GNN provides more reliable and concise explanations of psychiatric diagnoses.
XGNN explains graph neural networks by generating graphs that maximize model predictions.
problem Lack of explainable models for graph neural networks.
method Train a graph generator to maximize model predictions, using reinforcement learning and graph rules.
result Generated graphs provide insights into how GNNs work and can guide model improvement.
Unified model forecasts epidemics with spatial and temporal dynamics.
problem Limited accuracy in traditional models and lack of interpretability in deep learning models.
method CSTGNN integrates Spatio-Contact SIR model with Graph Neural Networks.
result Effective spatiotemporal epidemic forecasting with interpretability.
CaTs use DAGs with transformers to enforce causal constraints, improving neural network robustness.
problem Neural networks lack inherent causal structure respect, leading to reliability issues.
method Introducing Causal Transformers (CaTs) that operate under predefined causal constraints specified by DAGs.
result CaTs improve robustness and interpretability of neural networks under causal constraints.
Introduces MFCNs for better understanding manifold neural networks.
problem Understanding manifold neural networks (MNNs).
method Filter-combine framework on high-dimensional point clouds, approximating manifold by sparse graph.
result Method converges to continuum limit as data points increase.
LASE learns graph embeddings by unrolling GD iterations into a neural network.
problem Learning graph embeddings from graph inputs.
method Truncating and interpreting GD iterations as layers in a GNN.
result LASE outperforms eigendecomposition routines and GNNs in link prediction and node classification.
New method evaluates financial graphs for stock trend forecasting.
problem Lack of dynamic stock relationship graphs and evaluation methods.
method SPNews dataset and novel evaluation methods independent of downstream tasks.
result Evaluation methods can differentiate between various financial relationship graphs.
Finding the biomarkers associated with ASD is helpful for understanding the underlying roots of the disorder and can lead to earlier diagnosis and more targeted treatment. A promising approach to identify biomarkers is using Graph Neural Networks (GNNs), which can be used to analyze graph structured data, i.e. brain ne…
MV-GNN improves molecular property prediction by integrating atom and bond information.
problem Accurately predicting molecular properties using graph neural networks.
method Multi-View Graph Neural Network (MV-GNN) architecture with shared self-attentive readout and cross-dependent message passing.
result MV-GNN achieves superior performance on molecular property prediction benchmarks.
Stochastic blockmodels (SBM) and their variants, e.g., mixed-membership and overlapping stochastic blockmodels, are latent variable based generative models for graphs. They have proven to be successful for various tasks, such as discovering the community structure and link prediction on graph-structured data. Recentl…
Graph neural nets improve discrete choice modeling with network effects.
problem Modeling network effects in discrete choice problems.
method Graph Convolutional Neural Network (GCNN) architecture.
result Higher predictive performance than standard models with interpretability.
Graph convolutional kernel networks generalize CNNs to graph data.
problem Representing graph-structured data for machine learning.
method Convolutional kernel networks applied to graph data.
result Competitive performance on graph classification benchmarks.
Study validates saliency maps of GNNs using selective inference.
problem Reliability of GNN saliency maps in graph-structured data.
method Statistical testing framework with selective inference to control Type I error rate.
result Valid p-values for salient subgraphs, ensuring meaningful information. We introduce a convolutional neural network that operates directly on graphs. These networks allow end-to-end learning of prediction pipelines whose inputs are graphs of arbitrary size and shape. The architecture we present generalizes standard molecular feature extraction methods based on circular fingerprints. We sho…
Graph neural networks improve residential location choice predictions.
problem Capturing spatial dependence in discrete choice models.
method Graph Neural Networks (GNN) for analyzing spatial alternatives.
result GNN-DCMs outperform classical models in residential location choice predictions.
Graph Convolutional Networks improve prosthetic sensation interpretation.
problem Improving neuroprosthetic performance and sensory information stability.
method Applied Graph Convolutional Networks (GCNs) to interpret neuronal spiking activity.
result GCN model achieved 73.5% performance on ordinal regression task.
New model predicts chemical reactions with conditional graph logic networks.
problem Predicting chemical reactions for synthesizing molecules.
method Conditional Graph Logic Network (CGLN) based on graph neural networks.
result Significant improvement of 8.1% over state-of-the-art methods.
KuramotoGNN uses Kuramoto model to prevent over-smoothing in graph neural networks.
problem Over-smoothing in graph neural networks where node features become indistinguishable.
method Integrates Kuramoto model to prevent phase synchronization and instead achieve frequency synchronization.
result KuramotoGNN reduces over-smoothing on various graph deep learning tasks.
Graph Neural Networks (GNNs) are a powerful tool for machine learning on graphs.GNNs combine node feature information with the graph structure by recursively passing neural messages along edges of the input graph. However, incorporating both graph structure and feature information leads to complex models, and explainin…